mRNA_H-paniculata_contig24777.6724.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24777.6724.1
Unique NamemRNA_H-paniculata_contig24777.6724.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig24777.6724.1 vs. uniprot
Match: A0A6H5JQG4_9PHAE (GH81 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG4_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.130e-27
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 2 
Query:  188 MQPFSTLDPAEANCPHMDRPDDTWPTEVWGGLANASTELHTSLPTNAWWENIVLGSPTQ 364
            MQPFST+DPA+A+CPHMDRP+DTWPT  WG LANAS +LHTSLPTNAWWENIVLG P+Q
Sbjct:    1 MQPFSTVDPADAHCPHMDRPEDTWPTSAWGALANASVDLHTSLPTNAWWENIVLGFPSQ 59
[Close]
BLAST of mRNA_H-paniculata_contig24777.6724.1 vs. uniprot
Match: D7FR89_ECTSI (Endo-1,3-beta-glucanase, N-terminal, family GH81 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR89_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.850e-16
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 2 
Query:  236 MDRPDDTWPTEVWGGLANASTELHTSLPTNAWWENIVLGSPTQ 364
            MDRP+DTWPT  WG LANAS  LHTSLPTNAWWENIVLG P+Q
Sbjct:    1 MDRPEDTWPTSAWGALANASVSLHTSLPTNAWWENIVLGFPSQ 43
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24777.6724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQG4_9PHAE2.130e-2781.36GH81 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FR89_ECTSI1.850e-1681.40Endo-1,3-beta-glucanase, N-terminal, family GH81 n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24777contigH-paniculata_contig24777:1130..1508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size379
Cds size192
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929722.5070584-UTR-H-paniculata_contig24777:1129..13161622929722.5070584-UTR-H-paniculata_contig24777:1129..1316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24777 1130..1316 +
1691480982.85801-UTR-H-paniculata_contig24777:1129..13161691480982.85801-UTR-H-paniculata_contig24777:1129..1316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24777 1130..1316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929722.52476-CDS-H-paniculata_contig24777:1316..15081622929722.52476-CDS-H-paniculata_contig24777:1316..1508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24777 1317..1508 +
1691480982.866798-CDS-H-paniculata_contig24777:1316..15081691480982.866798-CDS-H-paniculata_contig24777:1316..1508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24777 1317..1508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24777.6724.1prot_H-paniculata_contig24777.6724.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24777 1317..1508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24777.6724.1

>prot_H-paniculata_contig24777.6724.1 ID=prot_H-paniculata_contig24777.6724.1|Name=mRNA_H-paniculata_contig24777.6724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MQPFSTLDPAEANCPHMDRPDDTWPTEVWGGLANASTELHTSLPTNAWWE
NIVLGSPTQVRSI*
back to top

mRNA from alignment at H-paniculata_contig24777:1130..1508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24777.6724.1 ID=mRNA_H-paniculata_contig24777.6724.1|Name=mRNA_H-paniculata_contig24777.6724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=379bp|location=Sequence derived from alignment at H-paniculata_contig24777:1130..1508+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTCTTCTCCTTACGATCATAGTGCATTCGGCAACAACCGGGGGTGCAA
AAAATTCCCTCCCTGTTGATGGTCGCGATAATGCCACTGGATCATCGAGC
AGTGGACAGTTTGCTGCTGCCACCACTCCTGAAGCCAAAGGGTCCTTAGA
CATCGATCAAGATTTAAGCCGCCGCACGATCTCGAGGATGCAACCGTTTT
CGACACTGGATCCTGCCGAAGCCAACTGTCCGCACATGGATCGCCCGGAC
GATACATGGCCAACGGAGGTCTGGGGTGGTCTCGCTAACGCCTCGACTGA
GCTGCACACGAGCTTACCTACCAATGCTTGGTGGGAAAACATTGTTCTGG
GCTCACCTACCCAGGTGCGTAGTATCTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig24777:1130..1508+

>mRNA_H-paniculata_contig24777.6724.1 ID=mRNA_H-paniculata_contig24777.6724.1|Name=mRNA_H-paniculata_contig24777.6724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig24777:1130..1508+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACCGTTTTCGACACTGGATCCTGCCGAAGCCAACTGTCCGCACAT
GGATCGCCCGGACGATACATGGCCAACGGAGGTCTGGGGTGGTCTCGCTA
ACGCCTCGACTGAGCTGCACACGAGCTTACCTACCAATGCTTGGTGGGAA
AACATTGTTCTGGGCTCACCTACCCAGGTGCGTAGTATCTAGATGCAACC
GTTTTCGACACTGGATCCTGCCGAAGCCAACTGTCCGCACATGGATCGCC
CGGACGATACATGGCCAACGGAGGTCTGGGGTGGTCTCGCTAACGCCTCG
ACTGAGCTGCACACGAGCTTACCTACCAATGCTTGGTGGGAAAACATTGT
TCTGGGCTCACCTACCCAGGTGCGTAGTATCTAG
back to top