mRNA_H-paniculata_contig2475.6714.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2475.6714.1
Unique NamemRNA_H-paniculata_contig2475.6714.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2475.6714.1 vs. uniprot
Match: A0A835Z9Y7_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.110e-8
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    4 ALDPLLDFDQLTRSRSQGKSFGGFSEGRVGFEPTYKYNK 120
            +L  LLDFDQLT  RS+G +F GFSE R+ F PTYKY+K
Sbjct:  306 SLQSLLDFDQLTLERSRGGAFVGFSEARISFPPTYKYDK 344
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BLAST of mRNA_H-paniculata_contig2475.6714.1 vs. uniprot
Match: UPI001262DD91 (type I inositol polyphosphate 5-phosphatase 5 isoform X1 n=2 Tax=Pistacia vera TaxID=55513 RepID=UPI001262DD91)

HSP 1 Score: 50.1 bits (118), Expect = 7.820e-6
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:   10 DPLLDFDQLTRSRSQGKSFGGFSEGRVGFEPTYKYN 117
            D LL+ DQL + R  G++F GFSEGR+ F PTYKY+
Sbjct:  369 DSLLEKDQLNKEREAGRTFSGFSEGRIFFAPTYKYS 404
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BLAST of mRNA_H-paniculata_contig2475.6714.1 vs. uniprot
Match: UPI000D6231AE (type I inositol polyphosphate 5-phosphatase 5 n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D6231AE)

HSP 1 Score: 48.1 bits (113), Expect = 3.750e-5
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:   10 DPLLDFDQLTRSRSQGKSFGGFSEGRVGFEPTYKYN 117
            D LL+ DQL   R  G+ F G+SEG++GF PTYKY+
Sbjct:  308 DALLEKDQLNMEREAGRVFSGWSEGKIGFAPTYKYS 343
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BLAST of mRNA_H-paniculata_contig2475.6714.1 vs. uniprot
Match: A0A068RHX2_9FUNG (Domain-containing protein n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RHX2_9FUNG)

HSP 1 Score: 47.4 bits (111), Expect = 7.030e-5
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 GALDPLLDFDQLTRSRSQGKSFGGFSEGRVGFEPTYKYN 117
            G LD L+  DQLT  R  G++F  F EG++ F+PTYKY+
Sbjct:  475 GQLDTLIVADQLTIERKDGRAFSMFEEGKLNFQPTYKYD 513
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BLAST of mRNA_H-paniculata_contig2475.6714.1 vs. uniprot
Match: A0A1Y1X3G8_9FUNG (SAC domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1X3G8_9FUNG)

HSP 1 Score: 47.4 bits (111), Expect = 7.030e-5
Identity = 20/39 (51.28%), Postives = 25/39 (64.10%), Query Frame = 1 
Query:    1 GALDPLLDFDQLTRSRSQGKSFGGFSEGRVGFEPTYKYN 117
            G L+ LL  DQL     +GK+F G+ EG + F PTYKYN
Sbjct:  771 GELEELLKNDQLITQMKEGKTFNGYREGHITFNPTYKYN 809
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BLAST of mRNA_H-paniculata_contig2475.6714.1 vs. uniprot
Match: UPI001D097B42 (inositol polyphosphate 5-phosphatase OCRL isoform X1 n=2 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D097B42)

HSP 1 Score: 47.0 bits (110), Expect = 9.620e-5
Identity = 19/39 (48.72%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 GALDPLLDFDQLTRSRSQGKSFGGFSEGRVGFEPTYKYN 117
            G +D +L  DQL +  +QGK   G++EGR+ F+PTYKY+
Sbjct:  412 GEMDSVLIADQLNQQHTQGKVLTGYTEGRITFQPTYKYD 450
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2475.6714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z9Y7_9STRA7.110e-864.10Endonuclease/exonuclease/phosphatase n=1 Tax=Tribo... [more]
UPI001262DD917.820e-658.33type I inositol polyphosphate 5-phosphatase 5 isof... [more]
UPI000D6231AE3.750e-555.56type I inositol polyphosphate 5-phosphatase 5 n=1 ... [more]
A0A068RHX2_9FUNG7.030e-551.28Domain-containing protein n=1 Tax=Lichtheimia cory... [more]
A0A1Y1X3G8_9FUNG7.030e-551.28SAC domain-containing protein n=1 Tax=Anaeromyces ... [more]
UPI001D097B429.620e-548.72inositol polyphosphate 5-phosphatase OCRL isoform ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2475contigH-paniculata_contig2475:14189..14320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.420119-CDS-H-paniculata_contig2475:14188..143201622929721.420119-CDS-H-paniculata_contig2475:14188..14320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 14189..14320 +
1691480982.3916237-CDS-H-paniculata_contig2475:14188..143201691480982.3916237-CDS-H-paniculata_contig2475:14188..14320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2475 14189..14320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2475.6714.1prot_H-paniculata_contig2475.6714.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2475 14189..14320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2475.6714.1

>prot_H-paniculata_contig2475.6714.1 ID=prot_H-paniculata_contig2475.6714.1|Name=mRNA_H-paniculata_contig2475.6714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
GALDPLLDFDQLTRSRSQGKSFGGFSEGRVGFEPTYKYNKARA*
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mRNA from alignment at H-paniculata_contig2475:14189..14320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2475.6714.1 ID=mRNA_H-paniculata_contig2475.6714.1|Name=mRNA_H-paniculata_contig2475.6714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig2475:14189..14320+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCACTCGATCCCCTGTTAGATTTTGACCAGCTCACACGGAGTAGAAG
TCAGGGGAAATCCTTTGGAGGATTTTCGGAAGGGCGCGTGGGCTTCGAGC
CGACGTACAAGTATAACAAGGCGAGGGCATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2475:14189..14320+

>mRNA_H-paniculata_contig2475.6714.1 ID=mRNA_H-paniculata_contig2475.6714.1|Name=mRNA_H-paniculata_contig2475.6714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig2475:14189..14320+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCACTCGATCCCCTGTTAGATTTTGACCAGCTCACACGGAGTAGAAG
TCAGGGGAAATCCTTTGGAGGATTTTCGGAAGGGCGCGTGGGCTTCGAGC
CGACGTACAAGTATAACAAGGCGAGGGCATAGGGGGCACTCGATCCCCTG
TTAGATTTTGACCAGCTCACACGGAGTAGAAGTCAGGGGAAATCCTTTGG
AGGATTTTCGGAAGGGCGCGTGGGCTTCGAGCCGACGTACAAGTATAACA
AGGCGAGGGCATAG
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