mRNA_H-paniculata_contig24749.6712.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24749.6712.1
Unique NamemRNA_H-paniculata_contig24749.6712.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24749.6712.1 vs. uniprot
Match: D7G554_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G554_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.320e-38
Identity = 74/89 (83.15%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:    1 RRHAFFEDVWLIVNDFTSAV-RVRAAAALGAMLQLVHERQSTPTFSRLVLDKVDEGFEQGTVERTHGSLLAIRQLLRHPGPWMGHRHLR 264
            RR AFFE +WL+VND TSAV RVRAAAALGAMLQLVHERQSTP  SRLVLDK++EGFEQGT ER HGSLL IRQLLRHPGPWM HRH R
Sbjct:  161 RRGAFFETIWLVVNDLTSAVVRVRAAAALGAMLQLVHERQSTPKHSRLVLDKIEEGFEQGTAERVHGSLLVIRQLLRHPGPWMAHRHQR 249
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BLAST of mRNA_H-paniculata_contig24749.6712.1 vs. uniprot
Match: A0A6H5K7N2_9PHAE (LysM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N2_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.980e-22
Identity = 54/88 (61.36%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:    1 RRHAFFEDVWLIVNDFTSAVRVRAAAALGAMLQLVHERQSTPTFSRLVLDKVDEGFEQGTVERTHGSLLAIRQLLRHPGPWMGHRHLR 264
            RR AFFE +WL+VND T    VR               +STP  SRLVLDK++EGFEQGT ER HGSLL IRQLLRHPGPWM HRH R
Sbjct:  129 RRGAFFETIWLVVNDLT----VRGGG------------ESTPKHSRLVLDKIEEGFEQGTAERVHGSLLVIRQLLRHPGPWMAHRHQR 200
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BLAST of mRNA_H-paniculata_contig24749.6712.1 vs. uniprot
Match: A0A0B7NMV5_9FUNG (Non-specific serine/threonine protein kinase n=3 Tax=Mucoraceae TaxID=34489 RepID=A0A0B7NMV5_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 4.050e-5
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:    7 HAFFEDVWLIVNDFTSAVRVRAAAALGAMLQLVHERQSTP---TFSRLVLDKVDEGFEQGTVERTHGSLLAIRQLLRHPGPWM 246
            H   + +W+ + D  + +R  AA  L   L++V +R+ TP   T+   + ++V+ G    + E THGSLLA+R+LL H G +M
Sbjct:  174 HRILDLIWVALRDSRNVIREYAADCLSQCLEIVQQRE-TPMRKTWYARIWEEVNRGLRMNSPEATHGSLLAMRELLLHAGMFM 255
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BLAST of mRNA_H-paniculata_contig24749.6712.1 vs. uniprot
Match: A0A8H7ELQ5_9FUNG (Non-specific serine/threonine protein kinase n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ELQ5_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 7.270e-5
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:   25 VWLIVNDFTSAVRVRAAAALGAMLQLVHERQSTPT----FSRLVLDKVDEGFEQGTVERTHGSLLAIRQLLRHPGPWM 246
            +W  + D  + +R  AA  L   L++V +R+ TPT    ++R +  + D G   G+ E THGSLLA+R+LL H G +M
Sbjct:  116 IWSALRDSRNLIRENAADCLSQCLEIVQQRE-TPTRKTWYAR-IWTEADRGMRMGSAEATHGSLLAMRELLLHAGMFM 191
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BLAST of mRNA_H-paniculata_contig24749.6712.1 vs. uniprot
Match: A0A1C7N3M8_9FUNG (Non-specific serine/threonine protein kinase n=13 Tax=Mucorineae TaxID=1344963 RepID=A0A1C7N3M8_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 7.280e-5
Identity = 28/77 (36.36%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   25 VWLIVNDFTSAVRVRAAAALGAMLQLVHERQSTP---TFSRLVLDKVDEGFEQGTVERTHGSLLAIRQLLRHPGPWM 246
            +W+ + D  + +R  AA  L   L+++ +R+ TP   T+   + ++V+ G    +VE THGSLLA+R+LL H G +M
Sbjct:  185 IWVALRDSRNVIREYAADCLSQCLKIIQQRE-TPMRKTWYSRIWEEVNRGLRMNSVEATHGSLLAMRELLLHAGMFM 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24749.6712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G554_ECTSI1.320e-3883.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7N2_9PHAE2.980e-2261.36LysM domain-containing protein (Fragment) n=1 Tax=... [more]
A0A0B7NMV5_9FUNG4.050e-534.94Non-specific serine/threonine protein kinase n=3 T... [more]
A0A8H7ELQ5_9FUNG7.270e-538.46Non-specific serine/threonine protein kinase n=1 T... [more]
A0A1C7N3M8_9FUNG7.280e-536.36Non-specific serine/threonine protein kinase n=13 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24749contigH-paniculata_contig24749:512..3417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue7.4e-34
Seed eggNOG ortholog2880.D7G554
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0891@2759
EC2.7.11.1
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Exons4
Model size749
Cds size747
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24749.6712.1prot_H-paniculata_contig24749.6712.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24749 512..3417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.1564624-CDS-H-paniculata_contig24749:511..5621622929721.1564624-CDS-H-paniculata_contig24749:511..562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24749 512..562 +
1691480982.2871132-CDS-H-paniculata_contig24749:511..5621691480982.2871132-CDS-H-paniculata_contig24749:511..562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24749 512..562 +
1622929721.1729462-CDS-H-paniculata_contig24749:856..9681622929721.1729462-CDS-H-paniculata_contig24749:856..968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24749 857..968 +
1691480982.2978914-CDS-H-paniculata_contig24749:856..9681691480982.2978914-CDS-H-paniculata_contig24749:856..968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24749 857..968 +
1622929721.1947474-CDS-H-paniculata_contig24749:2020..23531622929721.1947474-CDS-H-paniculata_contig24749:2020..2353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24749 2021..2353 +
1691480982.3055298-CDS-H-paniculata_contig24749:2020..23531691480982.3055298-CDS-H-paniculata_contig24749:2020..2353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24749 2021..2353 +
1622929721.2218552-CDS-H-paniculata_contig24749:3166..34171622929721.2218552-CDS-H-paniculata_contig24749:3166..3417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24749 3167..3417 +
1691480982.3129404-CDS-H-paniculata_contig24749:3166..34171691480982.3129404-CDS-H-paniculata_contig24749:3166..3417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24749 3167..3417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24749.6712.1

>prot_H-paniculata_contig24749.6712.1 ID=prot_H-paniculata_contig24749.6712.1|Name=mRNA_H-paniculata_contig24749.6712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
RRHAFFEDVWLIVNDFTSAVRVRAAAALGAMLQLVHERQSTPTFSRLVLD
KVDEGFEQGTVERTHGSLLAIRQLLRHPGPWMGHRHLRRRRRSNVDDVPP
HGAPVNTLSTSEPGTSATASASATNSRSSTFMPPSSAVSRGSHEAGISSK
VFATQPAPPSGTSSLGGSTAVGSGRTRGAVFFPASSGQGSELSQGGSWAT
AAAAAAGAGAGGSVLVGGGGTGSQRGLLVHPPPSPHFQPGRGRYLGKG*
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mRNA from alignment at H-paniculata_contig24749:512..3417+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24749.6712.1 ID=mRNA_H-paniculata_contig24749.6712.1|Name=mRNA_H-paniculata_contig24749.6712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2906bp|location=Sequence derived from alignment at H-paniculata_contig24749:512..3417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAGGCATGCGTTTTTCGAAGATGTGTGGTTGATCGTTAACGATTTCAC
GGTGAGAAACGAACATTGTGTGTATGAATGGCGCTATTGTATGTACAGGA
TATTTTGTTGTTTGTTTGTCTTCTGTTTGTTATTTGATGGTTTGTATTTT
TTATCTTCCGGTTTACCTCAAGTCCTCAAGTGTTACATCTCCTTTTTTGT
TTTGATCTCGTACTCTGATTGGTGTGCCTTTACTGTTGATCATTCTACAT
TTTTTTCCACGTGTGTACCTCTAAACGCAATTGATGTATTTTTTATTTTA
TTTCGATCAGACTTTTTTCTCTCTGCTTTTTTCTTTTGTGTAAAGTCTGC
CGTGCGGGTCCGCGCGGCTGCGGCGTTAGGGGCGATGCTTCAGCTAGTCC
ACGAGCGCCAGAGCACCCCAACGTTCAGTCGGCTTGTGCTGGACAAGGTG
GATGAAGGTGCGCTTGCTTTGCCGTGGGCACGTGGTGTGCCTGTGTTGGA
ACACTTGTGTGATTGAACTGGTAGTTTGCATGTTTCGCTCGACCAGCGCA
TACAAGGCGAGCTGTGCTTGGAAGTAGACGCAGCATCCGTGGCGCAGCGT
CCGTTAAAATTCTTTGTTCAAAGTTTACTTGAGTACAGAGTGGGAAAATA
TTTGGAAATGACAAAAGCGATCCTCCTCTACACGTTAGCGTATAGGGATG
AAGTCGATAGATGCTTTTTTCGTTCACCCGAGGAAGAGAAATCTCTCCTT
CCCCCTTTCAAAAAAATAAAAATAATAATATATATATATATGTTAGGTTA
AATATGTTATTTCACTTCGTTAAGTCCCGTTGGCCACAGGAGTAGATCCC
GCCGCCGTTTGTTTTTTTATCCCCACAAGACAAGGGCGAAGCCTCAAAGT
TTTTCTGATGCCCATACTGGGAAAGTCACATCTAGCCTTCGTACGTCAGT
TCTACTGTATCCCCGTTACCGTAAGTAGACACGCTTTCGCCCGTAGGGTA
TCGATGTTTCACGATTGCCAAAATACGCAGTTTACCTTCCCGGAGTACGC
TGTTTTGCTTTGGCGATGTCAGGCTTAGGGTTACGGGTAGGATGGTACCA
ACGAAACAGATGAAATTCGGTGTGGCAGGAAGGTATCGCTTTAGCTCGAT
CTGTATGTAGGCACAAGGCACGAAGTACCGTAAGATGCAATGAAGGTTTA
TGTGGCACTTCGCGGCGAATGCTTTACAACCGCGATTTATCGTGAGGGCT
ACGGCACCAGTGGTAACGACGAATAGTCTGCGATTGGAAAAATGTGTTGC
TAAGGAGACTTTTCGATTGATGGGTGCTTTTGACCACGGTATGTCTCTGT
TGTCGAGATAAGTAGCGTTTGGAAATGAGTTGCACCCTCGTGCAATACCT
CCGTTGGGTTTGTGCTATGTTGGTATCGTGGGGATGTGGTGTGGTCTTGT
AATGGCTCTGCTCTTGATCCCGCCGCAATCACCAATACATTTACACGTTC
TCCGCAAAGGTTTCGAGCAAGGCACCGTGGAACGCACTCACGGAAGCCTC
CTCGCCATTCGACAGCTCTTACGACATCCGGGTCCTTGGATGGGACACCG
CCATCTGCGCCGTCGTCGTCGATCGAATGTCGACGACGTACCCCCTCACG
GGGCCCCAGTCAACACCTTGTCAACGTCCGAACCTGGAACGTCGGCGACG
GCGTCGGCAAGCGCGACAAACAGTCGGTCGTCGACGTTTATGCCGCCCTC
CTCTGCTGTCTCTCGAGGGAGCCATGAGGCGGGCATCAGCAGTAAAGTGT
TTGCAACTCAACCGGCTCCGCCGTCGGGGACTTCTAGCCTCGGTGTGTGT
GTGTGTTGGGGGGGGAGGTCACAGATAGTTGAACTATAGCTCTGAAGTAT
AATAGCTCCAATGTATCCATGTCGACAGGTTATACAACTGAGTTCAGATT
CCACTTGTATAAATTGATCAGCAAAATATATCCATGGGTGCGTGCCGTAC
TTGAGGTCGTGGCGCAAATATAAGCGCGCTCCTCTTGATTGCTGGGCTTT
TTGCTAATGATATGTGCGCACGCAGCTTCGGTCTCATCTGAATGCTGCAC
ACGGTTGAATAGGAGTACAAAAGAAGCAGTACTCTCCCAGGTACATATAA
TATTGTGGCACAACGAGGGGGGGGCGTAGCTTTTGTTCTTGGAGTTATGC
CCTCCATCCTTTTTGGACTGAAGTCATATTTTCACTGTGTTGCCAGTATG
AGCCAATGCTTTTGCGCACACCCGCTGTAGGCGAGCTGCGTCGGTCACAG
GGCTCGAAACTCAGCTTACCAGCACCCTGCACCAAGCGGCGACGATTAGT
GACTGCTTTTTTGGCACTGCAATACTGTACTGTCTACACACGTGGGTAAA
CCACAGGTAGGGGACAGATGGCTACGTAGTCAACTGCATACGCGGTGAGA
TCTTGATTCGTCAACACACTAGTCGTTCAGACATGCTGTCACAAGATTGC
CGTTTCCCACAAATAGTGCCGTATATAGCCCGTGTATGTGGGTGTTGATT
ATATTTTATATGTGTTGTGACGTTTGAGGTCAGCTGCATACCCCCCCCCC
CTCCTCCCGGCAAACCCCCTGTCTCGTTTTTGTGGTCGCTTCGTTGCTTA
TGCAGGCGGCAGCACGGCCGTCGGGAGTGGCAGGACTAGGGGTGCCGTGT
TCTTCCCTGCGAGTAGCGGTCAGGGCTCGGAGTTGTCTCAAGGTGGCTCC
TGGGCGACAGCAGCAGCGGCGGCTGCAGGGGCAGGAGCGGGGGGATCTGT
GCTGGTTGGTGGAGGCGGGACCGGTTCGCAGAGGGGGCTGCTCGTGCACC
CACCGCCTTCCCCACACTTTCAACCAGGTCGGGGCCGATATTTGGGAAAG
GGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24749:512..3417+

>mRNA_H-paniculata_contig24749.6712.1 ID=mRNA_H-paniculata_contig24749.6712.1|Name=mRNA_H-paniculata_contig24749.6712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig24749:512..3417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAGGCATGCGTTTTTCGAAGATGTGTGGTTGATCGTTAACGATTTCAC
GCGAAGGCATGCGTTTTTCGAAGATGTGTGGTTGATCGTTAACGATTTCA
CGTCTGCCGTGCGGGTCCGCGCGGCTGCGGCGTTAGGGGCGATGCTTCAG
CTAGTCCACGAGCGCCAGAGCACCCCAACGTTCAGTCGGCTTGTGCTGGA
CAAGGTGGATGAAGTCTGCCGTGCGGGTCCGCGCGGCTGCGGCGTTAGGG
GCGATGCTTCAGCTAGTCCACGAGCGCCAGAGCACCCCAACGTTCAGTCG
GCTTGTGCTGGACAAGGTGGATGAAGGTTTCGAGCAAGGCACCGTGGAAC
GCACTCACGGAAGCCTCCTCGCCATTCGACAGCTCTTACGACATCCGGGT
CCTTGGATGGGACACCGCCATCTGCGCCGTCGTCGTCGATCGAATGTCGA
CGACGTACCCCCTCACGGGGCCCCAGTCAACACCTTGTCAACGTCCGAAC
CTGGAACGTCGGCGACGGCGTCGGCAAGCGCGACAAACAGTCGGTCGTCG
ACGTTTATGCCGCCCTCCTCTGCTGTCTCTCGAGGGAGCCATGAGGCGGG
CATCAGCAGTAAAGTGTTTGCAACTCAACCGGCTCCGCCGTCGGGGACTT
CTAGCCTCGGTTTCGAGCAAGGCACCGTGGAACGCACTCACGGAAGCCTC
CTCGCCATTCGACAGCTCTTACGACATCCGGGTCCTTGGATGGGACACCG
CCATCTGCGCCGTCGTCGTCGATCGAATGTCGACGACGTACCCCCTCACG
GGGCCCCAGTCAACACCTTGTCAACGTCCGAACCTGGAACGTCGGCGACG
GCGTCGGCAAGCGCGACAAACAGTCGGTCGTCGACGTTTATGCCGCCCTC
CTCTGCTGTCTCTCGAGGGAGCCATGAGGCGGGCATCAGCAGTAAAGTGT
TTGCAACTCAACCGGCTCCGCCGTCGGGGACTTCTAGCCTCGGCGGCAGC
ACGGCCGTCGGGAGTGGCAGGACTAGGGGTGCCGTGTTCTTCCCTGCGAG
TAGCGGTCAGGGCTCGGAGTTGTCTCAAGGTGGCTCCTGGGCGACAGCAG
CAGCGGCGGCTGCAGGGGCAGGAGCGGGGGGATCTGTGCTGGTTGGTGGA
GGCGGGACCGGTTCGCAGAGGGGGCTGCTCGTGCACCCACCGCCTTCCCC
ACACTTTCAACCAGGTCGGGGCCGATATTTGGGAAAGGGTTGAGCGGCAG
CACGGCCGTCGGGAGTGGCAGGACTAGGGGTGCCGTGTTCTTCCCTGCGA
GTAGCGGTCAGGGCTCGGAGTTGTCTCAAGGTGGCTCCTGGGCGACAGCA
GCAGCGGCGGCTGCAGGGGCAGGAGCGGGGGGATCTGTGCTGGTTGGTGG
AGGCGGGACCGGTTCGCAGAGGGGGCTGCTCGTGCACCCACCGCCTTCCC
CACACTTTCAACCAGGTCGGGGCCGATATTTGGGAAAGGGTTGA
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