mRNA_H-paniculata_contig2474.6710.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2474.6710.1
Unique NamemRNA_H-paniculata_contig2474.6710.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2474.6710.1 vs. uniprot
Match: D7FXJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ2_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.510e-27
Identity = 72/127 (56.69%), Postives = 79/127 (62.20%), Query Frame = 2 
Query:    5 SRQPDAFLIVCGDHFGLVVDRPPCVRDSKEVMDKDGEREDITGLVGLVDAAIKRGDRAKALELLSLEASHGRVRGREGAAAVAEPGRGRRQVSPWTVDCSLHPWLEGRRPLLGSTLVISTDELSLVW 385
            S  PDA L+VCGDHFGL+VDR     DS  +      R    GLVG VD AI RGDR +ALELLSLEASHGRV         A+ GR      PWTV+CSLHPWLE RRP LGS L I+ D LS  W
Sbjct:  288 SSAPDALLVVCGDHFGLIVDR-----DSGLMEAGGSSRGGKGGLVGRVDDAIARGDRRRALELLSLEASHGRV--------SAQKGR-----LPWTVNCSLHPWLENRRPFLGSVLTIAPDSLSADW 396
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BLAST of mRNA_H-paniculata_contig2474.6710.1 vs. uniprot
Match: A0A7S0E054_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E054_9CRYP)

HSP 1 Score: 77.4 bits (189), Expect = 7.030e-12
Identity = 45/124 (36.29%), Postives = 63/124 (50.81%), Query Frame = 2 
Query:   17 DAFLIVCGDHFGLVVDRPPCVRDSKEVMDKDGEREDITGLVGLVDAAIKRGDRAKALELLSLEASHGRVRGREGAAAVAEPGRGRRQVSPWTVDCSLHPWLEGRRPLLGSTLVISTDELSLVWQ 388
            DA LIVCG+HF  V+DRP         M  D ER+    L  LVD  ++ G+R +A++ LSLE  HGRV G                 + W VD +LHPW  G+R L    +++   E  ++W+
Sbjct:  230 DAILIVCGNHFNFVMDRPT-------KMPFDPERQSHASLQDLVDKLVQEGNREEAMKYLSLEGCHGRVSG----------------ANAWVVDNALHPWKIGKRLLSPDEVMVKYGENKVMWK 330
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BLAST of mRNA_H-paniculata_contig2474.6710.1 vs. uniprot
Match: A0A835YWZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.510e-11
Identity = 50/127 (39.37%), Postives = 58/127 (45.67%), Query Frame = 2 
Query:   17 DAFLIVCGDHFGLVVDRPPCVRDSKEVMDKDGEREDITGLVGLVDAAIKRGDRAKALELLSLEASHGRVRGREGAAAVAEPGRGRRQVSPWTVDCSLHPWLEGRRPLLGSTLVISTDELSLVWQHKI 397
            DAFLIVCGDHFG V DR    R         G+      LV +VDAA+KRGDR  A   L L+A HG                 RR+   W +D SL PWL G   L  S L +S+      W   I
Sbjct:  219 DAFLIVCGDHFGYVEDRAAAAR---------GDWGRYASLVEVVDAAVKRGDRGAAEAYLDLKACHGM----------------RREGGAWVIDYSLQPWLVGTTLLHSSDLELSSGGKEFKWNGAI 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2474.6710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXJ2_ECTSI1.510e-2756.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0E054_9CRYP7.030e-1236.29Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A835YWZ2_9STRA1.510e-1139.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2474contigH-paniculata_contig2474:1679..6233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue1.7e-17
Seed eggNOG ortholog2880.D7FXJ2
Hectar predicted targeting categoryother localisation
EggNOG OGs2C8UU@1,2S355@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1333
Cds size759
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2474.6710.1prot_H-paniculata_contig2474.6710.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2474 1776..5756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.0001564-UTR-H-paniculata_contig2474:1678..17751622929721.0001564-UTR-H-paniculata_contig2474:1678..1775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2474 1679..1775 +
1691480982.232827-UTR-H-paniculata_contig2474:1678..17751691480982.232827-UTR-H-paniculata_contig2474:1678..1775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2474 1679..1775 +
1622929721.0457256-UTR-H-paniculata_contig2474:5756..62331622929721.0457256-UTR-H-paniculata_contig2474:5756..6233Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2474 5757..6233 +
1691480982.259084-UTR-H-paniculata_contig2474:5756..62331691480982.259084-UTR-H-paniculata_contig2474:5756..6233Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2474 5757..6233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929721.0150664-CDS-H-paniculata_contig2474:1775..19141622929721.0150664-CDS-H-paniculata_contig2474:1775..1914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2474 1776..1914 +
1691480982.2426915-CDS-H-paniculata_contig2474:1775..19141691480982.2426915-CDS-H-paniculata_contig2474:1775..1914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2474 1776..1914 +
1622929721.0304427-CDS-H-paniculata_contig2474:5136..57561622929721.0304427-CDS-H-paniculata_contig2474:5136..5756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2474 5137..5756 +
1691480982.2502801-CDS-H-paniculata_contig2474:5136..57561691480982.2502801-CDS-H-paniculata_contig2474:5136..5756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2474 5137..5756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2474.6710.1

>prot_H-paniculata_contig2474.6710.1 ID=prot_H-paniculata_contig2474.6710.1|Name=mRNA_H-paniculata_contig2474.6710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp
MDKDGEREDITGLVGLVDAAIKRGDRAKALELLSLEASHGRVRGREGAAA
VAEPGRGRRQVSPWTVDCSLHPWLEGRRPLLGSTLVISTDELSLVWQHKI
NGTRCDSNHDEQEHRHQHGEPSSSPPAAWRSSGDPGYFPSTAVRAGPNIS
PARAAAQSCGEEKEVEEEPRGKEQSSERFAEWPGESRCRWTGVSLEGMWD
VMESTLQGSGSLQTLLEDSGARVIKDKDKDENEDEDGRRVGKRGNEFPRA
KL*
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mRNA from alignment at H-paniculata_contig2474:1679..6233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2474.6710.1 ID=mRNA_H-paniculata_contig2474.6710.1|Name=mRNA_H-paniculata_contig2474.6710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4555bp|location=Sequence derived from alignment at H-paniculata_contig2474:1679..6233+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAAGCAGACAGCCGGACGCCTTTTTGATAGTGTGCGGTGATCACTTCG
GTCTGGTGGTCGATCGCCCGCCATGCGTACGAGACTCGAAGGAGGTTATG
GATAAGGACGGGGAGAGGGAAGATATAACGGGGTTGGTGGGGTTGGTGGA
CGCTGCCATAAAGCGTGGGGACCGAGCGAAGGCTTTAGAACTTTTGTCGC
TGGAGGCGTCGCACGGCAGGGTCAGGGGACGAGAAGGTAAATGATGCCCA
CACGTCGGAAGAATCATGACTCGCAGTTGTGGCTCGCCACGTGTGGTATT
TTTGGCCTTGTTTTTGGCCGAGATGACGAAATAAACCAATTTTTGACTCG
CAGGAGGTTTTTGAGATGACTCGAGTAGACCGAATTTCGACTTGTGGAAG
TTTGGGGGTGCGACTCGAGTAAACCGAGCTAGACTCGTGTGAGCTTTGGG
TGATGAGGCAAGATGGATGAACACGTAATATGATTACACTGTACACAGCG
TTTGGGGTCCCGAGTGTATCGGGGATATCTTGGGAAAGAAAGGGATGCGG
TGTAGAATTGTTTAACAGGGCTTCCTCTGTGCCGTACGTTGATCAGTGTT
TTCGGTATCAATAGGCTGTTGGTGTGTGTGTTACACGGTTATCATCCTAG
GTACGGCAAGTGGATATCCCTATGAAAGTGTTTTTGGGTTATATTTTCGG
TCGTCGAAGGGTGTACGGTAGCTAGCAGACAGAACGTATAGATACAAGCT
TCTATTCGTGACTAACGCTCCAGCAAAGAAAGGCTTCCAGGCTGCGCTCT
GCAGTAAAGGTGTAGCAGAACAGACTGAATCCAACAAGACAAGTAAAAAA
CGCCTTCTGCGAAAGATTGAAATATAGAATTTTTAAACAAGATCGGACAC
GATACTGCGGAGGGTAGCTTGTTGATTGCACTAAATTCTGCTTCTTTTAT
ACGAGTCAGGCATTACCCATTTTCCTATAACAAACATTTTGGGCGTTTTT
TTTTTTGTTTTTTTTTTCCCAGGCTTTTTTGTATCAATTTTTTTTAGGTG
TTAAATAATTAAATTAGTGCTTGCGATTTTATTGGCAGGGATCTATTCGG
ACAAGGGTGTTACGTCCTGGAGGATGCTGTTTTGGGGATCTCCAGGATAA
CAGGGCAAAAACAATCCCTGATACTTCGTATAGGGACAATAACGTCTCAG
TTTTCCTACACGCCAGTTTTATTACGATATCCCCATCAATTTTTATACAT
ATCTCGGATGAAAAGTTCGAAGAAGGTTGCCACCAATTTTTGAACTATGA
ATATGACAGCACGAGAATACCTGACGCGTTCCAAAACCAGTTCGAATCGA
TAGACAGCTGCAGGTCCTCCACCCCTTCGTGGAGTGTTCGTTGATTCTAG
AGTATAACACATTTTTCTACTTTGGAGCATGAAGATGAACTAAAAGGTTA
AAGGTTCCATGAAATTTGTTATTTACTTGAAAAAAAAAAAATCATCCAAG
CAATGGAATTTTTGTCCGGCCAAAGTATCCCGATTTCTGTAGACCCAGGC
GCCGGAGGGGACTACTCGCAGCTTGGGTGCCTTTGTGCCGCTATTAAACA
TACAGGCAATGTAAGACTTGGGTCAGAAATGAGACCCGCACTCACTACAA
TCCTTGAGATGCCTCCTAGGTTTTGGACAGAATACGGGCTACCCTACCCA
TGTGGCTGGAGAAGGACATTACCCCCCAGACGAATATGAATACGAATACG
AATACTGAATGCTTTGTTGAGCAATCATCACGTTTTTTTTTTCTTTTTAG
CGACTAAAGGTTTAGCAGGAGCGAGCGACCCTGGACGATCTACGACTGCT
CCGAATAATAAGACGGATTATTAAGCAGGAGCCAACACCTTATTTGTTTT
TATGTGCCATCCCGCATGTGCTGAAATAAAACTCCGATTCGTTGTTTTTT
TGTTTTTTTTTCTATCAATTATTTAAAGTGTTGTATCGTATTCGCCCCGG
GGTGCATGCTTTTACTCGTAATATTTAAAAATCGATCGACCACGCCAATG
TAATTAATCGCCAGCACGGATTAGTCACTGGCTGCGCCGCCAGCCGATCA
TGAATCACACTGGCAGATGCTCTCGATGCGTAGCCCTCGATAGGATAGGT
GTGGTCTCTACTGAGCAGTTTTTATAACGCCGTCAAGCACGTGGTATTCA
CATATTTATGTAAATGTGTGCGAGTGTTACGATATTTATGTACATGTGTA
AAGGTGCAATGGGGTAGGGTTTGTGGTACATTTATTTTTGTGTTAGCGGG
TGCGAAATATAACAACCCAGTTATGACAGGTGCAAGGCGATTAAATCTTA
TGTATGTATGTATGTGTTTGTGTGTTGATATTCAGTTTGGAAGTGGTTGC
AATTTCGACCACTACTACCGACACTGCCGTCTATATTCTTTGTTCTTATC
GTGGGAGAACTGGGGAGAGACCATCACCACCGTTATGTACCCAGGGCTGC
AGAGTGCAGTGGTCTCGGGCAAAGCCGTGCTTTGGGTTCTTCACGTGTAC
CTGTCTGTCATGGGAAAAGTGCAAGGGGTAAAAACACGACCGCGATGGAC
TGCGGGTTCACACGTGGGACACGCAATAAACTACCCTATTAGGCATCTTT
CCCCGAGATACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGTTGGGCATGTGTACATGCTGCATACTGTGAGTA
TGGTAGACCTGGATTCAATCCACTTGTTGTGTGCTGCAAGAGCTGAAACT
AAGTGTTGACAACCACGCCTTGTACCCACCTTGCTGTTAACTAACTTCCC
ACCGTCCTCATGTTATCTCACCCCATCCCATCGCTCGCCCGTCAATCGAC
TCTGGAGAAAAATAATCAGAGGCCTAAGGTCACCACGGGTTTGCGTAATG
CTCCCCCCCCACTCATTGAACATCAATGTTCGACTGTACTCGCACAATAT
ATATATATATATACACACACACACATGCACACACACATTCTTTATCGTCC
ATAGCACGAGGGGGAGCATGGCGAGTAATAGGTTTATTTATAAGTCAAGT
CTAGTTGCTAAATGTAAAGAACTGAGGAAATTCCAAGCCGCCGCGACAGG
GAAAAAAATGTACAGTCATCCATGTGTCATGTACCAACCAAGCAAAATAG
TTAGCGGCACATGGTCGTGGGTGCGATGAAGTTTTTGCTGGTCATGTTGT
CATGTCTTTTCCCCTATGCCCTTCTTGGGAATGGAAGTGCTCATGTCACA
ATGTTGTAACACAATACCTTGTGTACGGAAGCCCATATTATTCATACATT
GCCCGTGAATGAGATTTTTTCCCTCTCTTCATCTGTCTTCGTTTTCACAT
ATCGTGGGGACGTGGACTGGCTCTAAAATCCCGGGTAATATTCGGCGCGC
TGCGGCAGGAGCAGCAGCAGTAGCTGAACCAGGAAGAGGACGACGACAAG
TTTCACCATGGACTGTAGATTGTTCCCTCCATCCTTGGCTCGAAGGCCGA
CGACCTCTGCTAGGCTCGACCCTGGTAATTTCGACAGACGAGCTCTCACT
TGTGTGGCAGCACAAGATCAACGGAACACGATGCGACTCCAATCACGACG
AGCAGGAGCACCGACATCAGCACGGCGAGCCGTCATCTTCACCACCCGCC
GCCTGGCGGAGCAGCGGCGATCCAGGGTACTTCCCATCGACTGCGGTGCG
GGCCGGTCCAAATATTTCGCCGGCTCGGGCTGCGGCACAAAGTTGCGGGG
AGGAGAAGGAGGTTGAGGAGGAGCCTCGAGGTAAAGAACAATCCTCGGAG
CGGTTCGCGGAATGGCCTGGAGAATCGCGGTGCCGCTGGACAGGAGTTTC
GCTGGAAGGCATGTGGGATGTGATGGAGAGTACGCTACAGGGGTCTGGCT
CGCTGCAGACTTTGCTGGAAGACTCTGGGGCACGTGTGATCAAGGATAAG
GATAAGGATGAGAATGAGGATGAGGATGGTAGGCGGGTGGGCAAACGGGG
GAACGAATTCCCGAGAGCCAAGTTGTGAAATAGTTATCTACGGAAGAACG
CGACCAACAAGATTGCTTGCAACGTTATGTGTTGCGCTGAAAAATGTTGG
GCACCTCGCTGCTGTTATTGGATCTAGGCTGGGCCGGATGGGTGCCCAGG
GCGAGTAGGGAGTGAGGGATTGGGCTATACCGATAAAGGACGAGGGGTAC
CAATTTATGCTATATAGTGGAAATCCAGCCTCGTTTATTGTTTACTTCTA
TGCAAACTTGAGCCTGGATTACTGGTAACCCGATTTCTTAAGTAAAGTAC
AATTACTGTAGAGTAGGGCGGTAGAGGATTCCACAAGAAGAGGGTATTGT
ATACACACAGACGGTAGTTAATTGTCGCGCCGAGTAGAAACGCTAGCCGT
TGTACGCTGCGGCCACTGCGGGTCCACCCTACAGTGTTGAAAATCACCTG
ACTGGAAGCTATATCGCGGTCGACGCACACTATCATCTCAGGTCAGCAGC
AGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2474:1679..6233+

>mRNA_H-paniculata_contig2474.6710.1 ID=mRNA_H-paniculata_contig2474.6710.1|Name=mRNA_H-paniculata_contig2474.6710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig2474:1679..6233+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATAAGGACGGGGAGAGGGAAGATATAACGGGGTTGGTGGGGTTGGT
GGACGCTGCCATAAAGCGTGGGGACCGAGCGAAGGCTTTAGAACTTTTGT
CGCTGGAGGCGTCGCACGGCAGGGTCAGGGGACGAGAAGATGGATAAGGA
CGGGGAGAGGGAAGATATAACGGGGTTGGTGGGGTTGGTGGACGCTGCCA
TAAAGCGTGGGGACCGAGCGAAGGCTTTAGAACTTTTGTCGCTGGAGGCG
TCGCACGGCAGGGTCAGGGGACGAGAAGGAGCAGCAGCAGTAGCTGAACC
AGGAAGAGGACGACGACAAGTTTCACCATGGACTGTAGATTGTTCCCTCC
ATCCTTGGCTCGAAGGCCGACGACCTCTGCTAGGCTCGACCCTGGTAATT
TCGACAGACGAGCTCTCACTTGTGTGGCAGCACAAGATCAACGGAACACG
ATGCGACTCCAATCACGACGAGCAGGAGCACCGACATCAGCACGGCGAGC
CGTCATCTTCACCACCCGCCGCCTGGCGGAGCAGCGGCGATCCAGGGTAC
TTCCCATCGACTGCGGTGCGGGCCGGTCCAAATATTTCGCCGGCTCGGGC
TGCGGCACAAAGTTGCGGGGAGGAGAAGGAGGTTGAGGAGGAGCCTCGAG
GTAAAGAACAATCCTCGGAGCGGTTCGCGGAATGGCCTGGAGAATCGCGG
TGCCGCTGGACAGGAGTTTCGCTGGAAGGCATGTGGGATGTGATGGAGAG
TACGCTACAGGGGTCTGGCTCGCTGCAGACTTTGCTGGAAGACTCTGGGG
CACGTGTGATCAAGGATAAGGATAAGGATGAGAATGAGGATGAGGATGGT
AGGCGGGTGGGCAAACGGGGGAACGAATTCCCGAGAGCCAAGTTGTGAGA
GCAGCAGCAGTAGCTGAACCAGGAAGAGGACGACGACAAGTTTCACCATG
GACTGTAGATTGTTCCCTCCATCCTTGGCTCGAAGGCCGACGACCTCTGC
TAGGCTCGACCCTGGTAATTTCGACAGACGAGCTCTCACTTGTGTGGCAG
CACAAGATCAACGGAACACGATGCGACTCCAATCACGACGAGCAGGAGCA
CCGACATCAGCACGGCGAGCCGTCATCTTCACCACCCGCCGCCTGGCGGA
GCAGCGGCGATCCAGGGTACTTCCCATCGACTGCGGTGCGGGCCGGTCCA
AATATTTCGCCGGCTCGGGCTGCGGCACAAAGTTGCGGGGAGGAGAAGGA
GGTTGAGGAGGAGCCTCGAGGTAAAGAACAATCCTCGGAGCGGTTCGCGG
AATGGCCTGGAGAATCGCGGTGCCGCTGGACAGGAGTTTCGCTGGAAGGC
ATGTGGGATGTGATGGAGAGTACGCTACAGGGGTCTGGCTCGCTGCAGAC
TTTGCTGGAAGACTCTGGGGCACGTGTGATCAAGGATAAGGATAAGGATG
AGAATGAGGATGAGGATGGTAGGCGGGTGGGCAAACGGGGGAACGAATTC
CCGAGAGCCAAGTTGTGA
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