mRNA_H-paniculata_contig24568.6659.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24568.6659.1
Unique NamemRNA_H-paniculata_contig24568.6659.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24568.6659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24568contigH-paniculata_contig24568:1369..1892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929713.060276-CDS-H-paniculata_contig24568:1368..15521622929713.060276-CDS-H-paniculata_contig24568:1368..1552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24568 1369..1552 +
1691480978.4308496-CDS-H-paniculata_contig24568:1368..15521691480978.4308496-CDS-H-paniculata_contig24568:1368..1552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24568 1369..1552 +
1622929713.071348-CDS-H-paniculata_contig24568:1843..18901622929713.071348-CDS-H-paniculata_contig24568:1843..1890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24568 1844..1890 +
1691480978.4408054-CDS-H-paniculata_contig24568:1843..18901691480978.4408054-CDS-H-paniculata_contig24568:1843..1890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24568 1844..1890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24568.6659.1prot_H-paniculata_contig24568.6659.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24568 1369..1890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24568.6659.1

>prot_H-paniculata_contig24568.6659.1 ID=prot_H-paniculata_contig24568.6659.1|Name=mRNA_H-paniculata_contig24568.6659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
SGSSSTPSLASTADRPRADVGADADSRRTAMDVGEGLQSSAPVTTTPVAA
SGASMAAPSPPEPFPEISPHRRKYCVR
back to top

mRNA from alignment at H-paniculata_contig24568:1369..1892+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24568.6659.1 ID=mRNA_H-paniculata_contig24568.6659.1|Name=mRNA_H-paniculata_contig24568.6659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=524bp|location=Sequence derived from alignment at H-paniculata_contig24568:1369..1892+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGAGCTCGTCGACTCCAAGTCTTGCGTCGACGGCGGACCGGCCCCG
AGCTGATGTTGGTGCCGACGCCGACAGTCGCCGGACGGCGATGGATGTCG
GCGAGGGGCTTCAGTCGTCTGCACCTGTCACGACCACGCCGGTCGCCGCG
AGTGGCGCCTCCATGGCCGCTCCATCTCCGCCCGGTGCGTGCGAGAGCGC
CAGGGTTACTCGCGATCGAAGCGTCAACACCGTGCAGTATATCCCAAACA
GAGATGTAATGGCAATGTCGGGCCATGTTCCTGTAGTGCCTCTAGGCGTT
CGAGCTCCGACGTGCTTGCATGTATATACATGCAGAAACATCGCAAGCAC
TCATGATATGCCTCAAGTCGTTATGATTAATAGTGCTACCCCCGCTCCCG
CCCCCCCCGCCTCGCCGCCCCGCCCCCCCTGCACCTCCCGTCTTCGACAA
CTGACACGCCGCCGCCTTTTCTCAGAGCCTTTTCCCGAGATCTCGCCTCA
CCGCCGCAAGTACTGCGTGAGGCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig24568:1369..1892+

>mRNA_H-paniculata_contig24568.6659.1 ID=mRNA_H-paniculata_contig24568.6659.1|Name=mRNA_H-paniculata_contig24568.6659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig24568:1369..1892+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGAGCTCGTCGACTCCAAGTCTTGCGTCGACGGCGGACCGGCCCCG
AGCTGATGTTGGTGCCGACGCCGACAGTCGCCGGACGGCGATGGATGTCG
GCGAGGGGCTTCAGTCGTCTGCACCTGTCACGACCACGCCGGTCGCCGCG
AGTGGCGCCTCCATGGCCGCTCCATCTCCGCCCGAGCGGGAGCTCGTCGA
CTCCAAGTCTTGCGTCGACGGCGGACCGGCCCCGAGCTGATGTTGGTGCC
GACGCCGACAGTCGCCGGACGGCGATGGATGTCGGCGAGGGGCTTCAGTC
GTCTGCACCTGTCACGACCACGCCGGTCGCCGCGAGTGGCGCCTCCATGG
CCGCTCCATCTCCGCCCGAGCCTTTTCCCGAGATCTCGCCTCACCGCCGC
AAGTACTGCGTGAGGAGCCTTTTCCCGAGATCTCGCCTCACCGCCGCAAG
TACTGCGTGAGG
back to top