mRNA_H-paniculata_contig24508.6643.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24508.6643.1
Unique NamemRNA_H-paniculata_contig24508.6643.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24508.6643.1 vs. uniprot
Match: A0A6H5L438_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L438_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.110e-32
Identity = 66/99 (66.67%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:  307 MFACLSVVSMGHGREGESGHLSLNAAVNIGGLVYVKDPYGIGPRDDEFAGHRFSFVRYSSICAVMPNSEAFEDAARSAGAILAEIDNATATIGGSRLLF 603
            M  C  VVS+G+GREGESGH++ N AV  G LV+VKDPYGIGPRDDEFAG +FSFVRY+SICAV+PNS+ FEDAAR AG + AE+D A     GS L F
Sbjct:   89 MHVC-KVVSVGNGREGESGHVTPNDAVKPGDLVFVKDPYGIGPRDDEFAGKKFSFVRYTSICAVIPNSQDFEDAAREAGKLQAEMDKAA----GSGLAF 182
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BLAST of mRNA_H-paniculata_contig24508.6643.1 vs. uniprot
Match: D7FXF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF3_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 3.570e-32
Identity = 66/99 (66.67%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:  307 MFACLSVVSMGHGREGESGHLSLNAAVNIGGLVYVKDPYGIGPRDDEFAGHRFSFVRYSSICAVMPNSEAFEDAARSAGAILAEIDNATATIGGSRLLF 603
            M  C  VVS+G+GREGESG+++ N AV  G LV+VKDPYGIGPRDDEFAG +FSFVRY+SICAV+PNSE FE+AAR AG + AEID A     GS L+F
Sbjct:   46 MHVC-KVVSIGNGREGESGNVTPNDAVKQGDLVFVKDPYGIGPRDDEFAGKKFSFVRYTSICAVIPNSEDFENAAREAGKLQAEIDKAA----GSGLVF 139
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BLAST of mRNA_H-paniculata_contig24508.6643.1 vs. uniprot
Match: A0A835ZNU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNU0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.320e-26
Identity = 51/79 (64.56%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:  307 MFACLSVVSMGHGREGESGHLSLNAAVNIGGLVYVKDPYGIGPRDDEFAGHRFSFVRYSSICAVMPNSEAFEDAARSAG 543
            M  C  +VS+G GREGESG L  NA +  G LVYVKDP+GIGP+DDEF+ H+FSFVRY +ICAV+PNS+A+E +AR+AG
Sbjct:   44 MHVC-KIVSLGQGREGESGTLVENAGLKPGDLVYVKDPWGIGPKDDEFSNHKFSFVRYQNICAVIPNSDAYEASARAAG 121
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BLAST of mRNA_H-paniculata_contig24508.6643.1 vs. uniprot
Match: A0A7S1UEZ3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEZ3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.400e-11
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:  325 VVSMGHGREGESGHLSLNAAVNIGGLVYVKDPYGIGPRDDEFAGHRFSFVRYSSICAVM 501
            V+S+G GREGE+G  ++N +   G +V++++ +GIGPRD+EF G +FSFVR   +CA M
Sbjct:  130 VLSVGDGREGENGLRTMNGSYKEGDIVFLRNAWGIGPRDEEFRGRKFSFVREQDVCAHM 188
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BLAST of mRNA_H-paniculata_contig24508.6643.1 vs. uniprot
Match: A0A7S1XW59_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW59_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.180e-10
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:  325 VVSMGHGREGESGHLSLNAAVNIGGLVYVKDPYGIGPRDDEFAGHRFSFVRYSSICAVM 501
            V+S+G GREGE+G  ++N +   G +V++++ +GIGPRD+EF G +FSFVR   +CA M
Sbjct:  150 VLSVGDGREGENGLRTMNGSYKEGDIVFLRNAWGIGPRDEEFRGRKFSFVREQDVCAHM 208
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BLAST of mRNA_H-paniculata_contig24508.6643.1 vs. uniprot
Match: A0A7R9U985_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U985_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.620e-10
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:  325 VVSMGHGREGESGHLSLNAAVNIGGLVYVKDPYGIGPRDDEFAGHRFSFVRYSSICA 495
            VVS+G GREGE+G  ++N     G +V++++ +GIGPRD+EF G +FSFVR   +CA
Sbjct:  112 VVSVGDGREGENGCKTMNGNYKQGDIVFLRNAWGIGPRDEEFFGRKFSFVREQDVCA 168
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BLAST of mRNA_H-paniculata_contig24508.6643.1 vs. uniprot
Match: A0A6T5R4I0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5R4I0_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 1.990e-9
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:  325 VVSMGHGREGESGHLSLNAAVNIGGLVYVKDPYGIGPRDDEFAGHRFSFVRYSSICAVMPNSEAFE 522
            VVS+G G EGESG ++ +  +  G  VYVK+P+GIG +D++F   +FSF+RY+ +C       A E
Sbjct:   86 VVSVGPGVEGESGAVATSRGLAPGDYVYVKNPWGIGAKDEQFGRRKFSFLRYNEVCGTFDAGAAME 151
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BLAST of mRNA_H-paniculata_contig24508.6643.1 vs. uniprot
Match: A0A7S1UZ75_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZ75_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.280e-8
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  325 VVSMGHGREGESGHLSLNAAVNIGGLVYVKDPYGIGPRDDEFA-GHRFSFVRYSSICAVMPNSEAFED 525
            V+SMG GRE E+G ++    + +G +V  K+P+GIGP+D+E A G + SF+R   I AV+P     ED
Sbjct:   94 VLSMGPGREEENGMIAPMPDIKVGDIVVAKNPWGIGPKDEETADGKKLSFMRALDIAAVIPGGMKIED 161
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BLAST of mRNA_H-paniculata_contig24508.6643.1 vs. uniprot
Match: A0A4D9CVR2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVR2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.130e-7
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  325 VVSMGHGREGESGHLSLNAAVNIGGLVYVKDPYGIGPRDDEFAGHRFSFVR 477
            VVS+G G  GESG L+    +  G + YVK P+GIGPRD+ + G +FSF+R
Sbjct:  109 VVSIGSGLVGESGMLTTIENLGRGDVAYVKQPWGIGPRDENWEGRKFSFIR 159
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BLAST of mRNA_H-paniculata_contig24508.6643.1 vs. uniprot
Match: B7FX98_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FX98_PHATC)

HSP 1 Score: 56.6 bits (135), Expect = 1.840e-6
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:  325 VVSMGHGREGESGHLSLNAAVNIGGLVYVKDPYGIGPRDDEFA-GHRFSFVRYSSICAVM 501
            V+S+G GRE E+G +S    + +G +V  K+P+GIGP+D+E A G + SF+R   I AV+
Sbjct:   88 VLSVGPGREEENGRVSPMPEIRVGDIVIAKNPWGIGPKDEETADGKKLSFMRSQDIAAVV 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24508.6643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5L438_9PHAE3.110e-3266.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXF3_ECTSI3.570e-3266.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZNU0_9STRA4.320e-2664.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1UEZ3_9STRA8.400e-1149.15Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1XW59_9STRA1.180e-1049.15Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U985_9STRA1.620e-1050.88Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A6T5R4I0_HETAK1.990e-943.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1UZ75_9STRA6.280e-844.12Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A4D9CVR2_9STRA7.130e-750.98Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
B7FX98_PHATC1.840e-645.00Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24508contigH-paniculata_contig24508:74..1125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue3.3e-26
Seed eggNOG ortholog2880.D7FXF3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Chaperonin 10 Kd subunit
EggNOG OGs2E43F@1,2SB1V@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size744
Cds size744
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929710.633934-CDS-H-paniculata_contig24508:73..3871622929710.633934-CDS-H-paniculata_contig24508:73..387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24508 74..387 -
1691480977.458645-CDS-H-paniculata_contig24508:73..3871691480977.458645-CDS-H-paniculata_contig24508:73..387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24508 74..387 -
1622929710.649681-CDS-H-paniculata_contig24508:695..11251622929710.649681-CDS-H-paniculata_contig24508:695..1125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24508 696..1125 -
1691480977.4706507-CDS-H-paniculata_contig24508:695..11251691480977.4706507-CDS-H-paniculata_contig24508:695..1125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24508 696..1125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24508.6643.1prot_H-paniculata_contig24508.6643.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24508 74..1125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24508.6643.1

>prot_H-paniculata_contig24508.6643.1 ID=prot_H-paniculata_contig24508.6643.1|Name=mRNA_H-paniculata_contig24508.6643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=248bp
MLSSLPLLYSKQNRDTHNSPPLASRQNLDEILLINYLRTELESFQNDHHR
RVEGLFDRKACFRERYQSFCVANSVLAFSRLVSSPLSLVLFLECMVLFTS
LTMFACLSVVSMGHGREGESGHLSLNAAVNIGGLVYVKDPYGIGPRDDEF
AGHRFSFVRYSSICAVMPNSEAFEDAARSAGAILAEIDNATATIGGSRLL
FSSIVCSIQCRDVADSFVHVFIFFNPRKAEAKTFSAASTFRYSPKHV*
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mRNA from alignment at H-paniculata_contig24508:74..1125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24508.6643.1 ID=mRNA_H-paniculata_contig24508.6643.1|Name=mRNA_H-paniculata_contig24508.6643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1052bp|location=Sequence derived from alignment at H-paniculata_contig24508:74..1125- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTCCTCGCTTCCATTGCTTTATTCAAAACAAAACCGTGACACACA
CAACAGCCCACCGCTCGCATCTAGGCAAAATCTTGATGAAATTTTGCTAA
TAAACTACTTGCGTACAGAATTGGAATCGTTCCAAAATGACCATCATCGC
CGCGTTGAAGGTTTATTCGATAGAAAAGCATGTTTTCGAGAGAGGTACCA
ATCCTTTTGTGTTGCGAATTCTGTGCTCGCCTTCTCTCGACTTGTTTCCA
GTCCTCTTAGCCTTGTCTTGTTTTTAGAATGTATGGTCCTTTTCACTTCT
TTGACAATGTTTGCCTGTTTGTCGGTGGTGTCGATGGGGCATGGGCGAGA
GGGAGAGAGCGGACACTTGAGCCTGAATGCTGCTGTCAACATTGGAGGCC
TCGTGTACGTGAAGGACCCTTACGGAATTGGTGAGTCATCGTCAATCGTG
ACGTTTTTGTCGCTTGCATGTGTACCCACCACCCGCCACTCCACTCCTGT
CTGGGATAACCACTTGGACTTGCTCGAAACACGCTCTCTGTTGTGAGACT
CATGTTTGCAGGAATAGAGCAAATGCTCCGCGCGCGCCTAAAGTATGATG
CCCCAAGTTGGCCGTATGCACACACAGCTAACGATCTACTCGGAGTATTT
GCATAACACTGAACGTGTTCTTGTTAATTGAAATTTTTTACGTGTGTCCT
GTTACTGAAAACGTAAAAACATTGCTTGCTGGAAACAGGCCCCAGGGACG
ACGAGTTCGCCGGTCATCGTTTTTCGTTCGTGCGGTATTCCAGCATCTGT
GCGGTCATGCCAAACTCGGAGGCTTTCGAGGATGCGGCGCGAAGCGCTGG
CGCGATTCTGGCAGAGATCGACAACGCTACTGCTACGATTGGCGGCAGCA
GGCTTTTGTTCTCATCTATTGTTTGTTCTATTCAATGTCGGGATGTTGCT
GATTCGTTTGTCCATGTTTTTATTTTTTTTAACCCCCGGAAGGCTGAGGC
AAAAACCTTTTCCGCTGCTTCCACATTCAGGTATTCGCCCAAACATGTCT
AA
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Coding sequence (CDS) from alignment at H-paniculata_contig24508:74..1125-

>mRNA_H-paniculata_contig24508.6643.1 ID=mRNA_H-paniculata_contig24508.6643.1|Name=mRNA_H-paniculata_contig24508.6643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1488bp|location=Sequence derived from alignment at H-paniculata_contig24508:74..1125- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTCCTCGCTTCCATTGCTTTATTCAAAACAAAACCGTGACACACA
CAACAGCCCACCGCTCGCATCTAGGCAAAATCTTGATGAAATTTTGCTAA
TAAACTACTTGCGTACAGAATTGGAATCGTTCCAAAATGACCATCATCGC
CGCGTTGAAGGTTTATTCGATAGAAAAGCATGTTTTCGAGAGAGGTACCA
ATCCTTTTGTGTTGCGAATTCTGTGCTCGCCTTCTCTCGACTTGTTTCCA
GTCCTCTTAGCCTTGTCTTGTTTTTAGAATGTATGGTCCTTTTCACTTCT
TTGACAATGTTTGCCTGTTTGTCGGTGGTGTCGATGGGGCATGGGCGAGA
GGGAGAGAGCGGACACTTGAGCCTGAATGCTGCTGTCAACATTGGAGGCC
TCGTGTACGTGAAGGACCCTTACGGAATTGATGCTGTCCTCGCTTCCATT
GCTTTATTCAAAACAAAACCGTGACACACACAACAGCCCACCGCTCGCAT
CTAGGCAAAATCTTGATGAAATTTTGCTAATAAACTACTTGCGTACAGAA
TTGGAATCGTTCCAAAATGACCATCATCGCCGCGTTGAAGGTTTATTCGA
TAGAAAAGCATGTTTTCGAGAGAGGTACCAATCCTTTTGTGTTGCGAATT
CTGTGCTCGCCTTCTCTCGACTTGTTTCCAGTCCTCTTAGCCTTGTCTTG
TTTTTAGAATGTATGGTCCTTTTCACTTCTTTGACAATGTTTGCCTGTTT
GTCGGTGGTGTCGATGGGGCATGGGCGAGAGGGAGAGAGCGGACACTTGA
GCCTGAATGCTGCTGTCAACATTGGAGGCCTCGTGTACGTGAAGGACCCT
TACGGAATTGGCCCCAGGGACGACGAGTTCGCCGGTCATCGTTTTTCGTT
CGTGCGGTATTCCAGCATCTGTGCGGTCATGCCAAACTCGGAGGCTTTCG
AGGATGCGGCGCGAAGCGCTGGCGCGATTCTGGCAGAGATCGACAACGCT
ACTGCTACGATTGGCGGCAGCAGGCTTTTGTTCTCATCTATTGTTTGTTC
TATTCAATGTCGGGATGTTGCTGATTCGTTTGTCCATGTTTTTATTTTTT
TTAACCCCCGGAAGGCTGAGGCAAAAACCTTTTCCGCTGCTTCCACATTC
AGGTATTCGCCCAAACATGTCTAAGCCCCAGGGACGACGAGTTCGCCGGT
CATCGTTTTTCGTTCGTGCGGTATTCCAGCATCTGTGCGGTCATGCCAAA
CTCGGAGGCTTTCGAGGATGCGGCGCGAAGCGCTGGCGCGATTCTGGCAG
AGATCGACAACGCTACTGCTACGATTGGCGGCAGCAGGCTTTTGTTCTCA
TCTATTGTTTGTTCTATTCAATGTCGGGATGTTGCTGATTCGTTTGTCCA
TGTTTTTATTTTTTTTAACCCCCGGAAGGCTGAGGCAAAAACCTTTTCCG
CTGCTTCCACATTCAGGTATTCGCCCAAACATGTCTAA
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