mRNA_H-paniculata_contig2444.6618.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2444.6618.1
Unique NamemRNA_H-paniculata_contig2444.6618.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2444.6618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2444contigH-paniculata_contig2444:10266..11827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size827
Cds size780
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2444.6618.1prot_H-paniculata_contig2444.6618.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2444 10266..11780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.7585049-CDS-H-paniculata_contig2444:10265..110301622929706.7585049-CDS-H-paniculata_contig2444:10265..11030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 10266..11030 -
1691480975.6395078-CDS-H-paniculata_contig2444:10265..110301691480975.6395078-CDS-H-paniculata_contig2444:10265..11030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 10266..11030 -
1622929706.774899-CDS-H-paniculata_contig2444:11765..117801622929706.774899-CDS-H-paniculata_contig2444:11765..11780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 11766..11780 -
1691480975.65886-CDS-H-paniculata_contig2444:11765..117801691480975.65886-CDS-H-paniculata_contig2444:11765..11780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 11766..11780 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.7893827-UTR-H-paniculata_contig2444:11780..118271622929706.7893827-UTR-H-paniculata_contig2444:11780..11827Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2444 11781..11827 -
1691480975.6721478-UTR-H-paniculata_contig2444:11780..118271691480975.6721478-UTR-H-paniculata_contig2444:11780..11827Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2444 11781..11827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2444.6618.1

>prot_H-paniculata_contig2444.6618.1 ID=prot_H-paniculata_contig2444.6618.1|Name=mRNA_H-paniculata_contig2444.6618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp
MDDGVQCSKSIAARPRHPQPHHRLRTTKAKVKVKKQQLCGGSSGGGLSFL
HWPILRMVLAAAVSLGITVTTTAVSQSSPTRATGTRVQRTPIRLGTSERR
TSASRQELSPLGGRGRRCGGGGLPAALLARKGPRRPKNSHNVNKGNNLAS
APAGFLAPYGTTTTAIARRERARKNTAWYDGAGGIARLTVFFKRPRNGGG
HGAGGTSIKSNDGGVSRAVLCRALPKGEHGEDSGWQECRIGGGGGIRQRS
RKGGGSGGGR
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mRNA from alignment at H-paniculata_contig2444:10266..11827-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2444.6618.1 ID=mRNA_H-paniculata_contig2444.6618.1|Name=mRNA_H-paniculata_contig2444.6618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1562bp|location=Sequence derived from alignment at H-paniculata_contig2444:10266..11827- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTGGGCCGCTGACTAGTGCGTTGCTGTGTTCTGAGCTTCAGCAACATG
GATGACGGTGTGGTGAGTTTCTCTGGATCCCAGGGTTTCAGATCGCAATG
CTTCCTCATGCGATGTTGTTGTTTGAGGCATTCAGAATGGTGATGATAGA
TTAGATCGATGGGTACATATGTATGTGGAGGGAAAAAAAACACGTTCAGT
TTTGTGGGCGTCACCGTTACCGTCTGGTCATCGTTTCATCACACACAAGA
ATGGACAAATGAGCAACTTTCTCTTTTTCAAACGTTTGATACCATGACGC
TTGCGCTTTCGGCTGTTTGCGTTGTTGACAAAAGATCAGGTGTGTTCCAT
GGAAATACTCTCTTCTCTGTTATACGTGTCTGGTTTCATCTTCTTTGTTG
TCGCTCGAAAGTTGACCGCCGATCTCCGTATCTGACCATACCATCCGTTT
CACACCTCCCATCTTAGTAAAACTACTTGTCCAGAAAATAGATATATATG
TTAAACACGCACAACCGGTAACGCTCCGTGAGATCATCTCGCCGAGGGTC
CACCATCGTGTGAACGGTAGCTCGCTGATCTTGTGTCCTCATCAGCACTA
TTAGGCTCACAAGGCGGCAAGATAAAGTGAATACTACTGACTAAATATGA
GAGGGCTCGCATACCATGGGTCTCAGCAAAAATGTGCTGTGAGCTTCAAC
TCAAACATGATATTCTGTTCCTTTTTGGTAAGTCAAACGCACCGTACCTG
TCTTGCTGCCTATCTTTCTGTAACGGTCTCTTATTGGCAAAAAGCAGCAG
TGCTCGAAGTCCATCGCCGCCCGGCCAAGGCATCCGCAGCCCCACCATCG
CCTACGAACAACAAAAGCGAAAGTTAAGGTAAAGAAACAACAATTGTGCG
GCGGCAGTAGTGGCGGGGGCTTATCTTTCCTTCATTGGCCGATCTTGCGC
ATGGTGCTCGCTGCAGCTGTCTCGCTCGGAATCACAGTGACGACTACAGC
AGTGTCTCAATCATCACCGACGCGCGCTACAGGGACGAGGGTACAACGAA
CACCCATCAGGTTGGGCACATCCGAACGGAGGACATCTGCTTCGAGGCAA
GAACTATCGCCCCTGGGAGGGCGAGGGCGACGCTGCGGTGGTGGTGGCCT
TCCAGCAGCGTTGTTAGCGCGAAAGGGACCACGGCGTCCTAAAAATAGTC
ATAACGTAAACAAGGGCAACAATCTTGCGTCTGCCCCGGCAGGGTTTCTT
GCGCCATACGGCACCACCACAACGGCGATAGCTCGAAGGGAGAGAGCGAG
AAAGAATACCGCATGGTATGATGGTGCCGGCGGCATTGCGCGTTTGACGG
TGTTTTTTAAAAGACCACGTAACGGGGGTGGTCATGGCGCTGGCGGCACA
AGCATCAAGAGCAACGACGGTGGGGTATCGCGCGCAGTGTTATGTCGGGC
ATTGCCGAAGGGGGAGCATGGGGAAGATAGTGGTTGGCAGGAGTGCAGGA
TTGGAGGTGGCGGTGGTATAAGGCAACGGTCTAGGAAGGGTGGAGGTAGT
GGAGGAGGGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2444:10266..11827-

>mRNA_H-paniculata_contig2444.6618.1 ID=mRNA_H-paniculata_contig2444.6618.1|Name=mRNA_H-paniculata_contig2444.6618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at H-paniculata_contig2444:10266..11827- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGACGGTGTGATGGATGACGGTGTGCAGTGCTCGAAGTCCATCGC
CGCCCGGCCAAGGCATCCGCAGCCCCACCATCGCCTACGAACAACAAAAG
CGAAAGTTAAGGTAAAGAAACAACAATTGTGCGGCGGCAGTAGTGGCGGG
GGCTTATCTTTCCTTCATTGGCCGATCTTGCGCATGGTGCTCGCTGCAGC
TGTCTCGCTCGGAATCACAGTGACGACTACAGCAGTGTCTCAATCATCAC
CGACGCGCGCTACAGGGACGAGGGTACAACGAACACCCATCAGGTTGGGC
ACATCCGAACGGAGGACATCTGCTTCGAGGCAAGAACTATCGCCCCTGGG
AGGGCGAGGGCGACGCTGCGGTGGTGGTGGCCTTCCAGCAGCGTTGTTAG
CGCGAAAGGGACCACGGCGTCCTAAAAATAGTCATAACGTAAACAAGGGC
AACAATCTTGCGTCTGCCCCGGCAGGGTTTCTTGCGCCATACGGCACCAC
CACAACGGCGATAGCTCGAAGGGAGAGAGCGAGAAAGAATACCGCATGGT
ATGATGGTGCCGGCGGCATTGCGCGTTTGACGGTGTTTTTTAAAAGACCA
CGTAACGGGGGTGGTCATGGCGCTGGCGGCACAAGCATCAAGAGCAACGA
CGGTGGGGTATCGCGCGCAGTGTTATGTCGGGCATTGCCGAAGGGGGAGC
ATGGGGAAGATAGTGGTTGGCAGGAGTGCAGGATTGGAGGTGGCGGTGGT
ATAAGGCAACGGTCTAGGAAGGGTGGAGGTAGTGGAGGAGGGCGGCAGTG
CTCGAAGTCCATCGCCGCCCGGCCAAGGCATCCGCAGCCCCACCATCGCC
TACGAACAACAAAAGCGAAAGTTAAGGTAAAGAAACAACAATTGTGCGGC
GGCAGTAGTGGCGGGGGCTTATCTTTCCTTCATTGGCCGATCTTGCGCAT
GGTGCTCGCTGCAGCTGTCTCGCTCGGAATCACAGTGACGACTACAGCAG
TGTCTCAATCATCACCGACGCGCGCTACAGGGACGAGGGTACAACGAACA
CCCATCAGGTTGGGCACATCCGAACGGAGGACATCTGCTTCGAGGCAAGA
ACTATCGCCCCTGGGAGGGCGAGGGCGACGCTGCGGTGGTGGTGGCCTTC
CAGCAGCGTTGTTAGCGCGAAAGGGACCACGGCGTCCTAAAAATAGTCAT
AACGTAAACAAGGGCAACAATCTTGCGTCTGCCCCGGCAGGGTTTCTTGC
GCCATACGGCACCACCACAACGGCGATAGCTCGAAGGGAGAGAGCGAGAA
AGAATACCGCATGGTATGATGGTGCCGGCGGCATTGCGCGTTTGACGGTG
TTTTTTAAAAGACCACGTAACGGGGGTGGTCATGGCGCTGGCGGCACAAG
CATCAAGAGCAACGACGGTGGGGTATCGCGCGCAGTGTTATGTCGGGCAT
TGCCGAAGGGGGAGCATGGGGAAGATAGTGGTTGGCAGGAGTGCAGGATT
GGAGGTGGCGGTGGTATAAGGCAACGGTCTAGGAAGGGTGGAGGTAGTGG
AGGAGGGCGG
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