mRNA_H-paniculata_contig24340.6593.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24340.6593.1
Unique NamemRNA_H-paniculata_contig24340.6593.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24340.6593.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.340e-24
Identity = 58/131 (44.27%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    1 MFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFELDKCEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRNWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 393
            +F LA G+V  +S LQK+TA S+  AE+IA+A  A++  YL  +  ELGF      + SD+ GA+  A NS +  RSK I+ R+  LR  +    +V+  V S +QLADILTKH ERV F +LR+ V   G
Sbjct:  573 IFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 703          
BLAST of mRNA_H-paniculata_contig24340.6593.1 vs. uniprot
Match: A0A6H5JRF1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.820e-24
Identity = 58/131 (44.27%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    1 MFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFELDKCEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRNWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 393
            +F LA G+V  +S LQK+TA S+  AE+IA+A  A++  YL  +  ELGF      + SD+ GA+  A NS +  RSK I+ R+  LR  +    +V+  V S +QLADILTKH ERV F +LR+ V   G
Sbjct:  390 IFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNILIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 520          
BLAST of mRNA_H-paniculata_contig24340.6593.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 8.910e-24
Identity = 52/114 (45.61%), Postives = 80/114 (70.18%), Query Frame = 1
Query:    1 MFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGF-ELDKCEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRNWIRSNQLVIDHVASADQLADILTK 339
            M FLA  L++FSSR+Q+I A S++E E   + + AK G Y  ++  ELG+ +L K ++ +D R AL L +N  +SNRS+HI++R+ ALR W+ S+++ +DHV S+  L+DILTK
Sbjct:  750 MVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILTK 863          
BLAST of mRNA_H-paniculata_contig24340.6593.1 vs. uniprot
Match: UPI00201A91CC (secreted RxLR effector protein 161-like n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI00201A91CC)

HSP 1 Score: 89.7 bits (221), Expect = 1.710e-19
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 1
Query:    1 MFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFELDKC-EVRSDNRGALHLAANSNYSNRSKHIAIRFAALRNWIRSNQLVIDHVASADQLADILTKHCERVVFTQLR 372
            +F +++G V +SS+ Q +   STTEAE I  A+CA+Q  ++  I  +LG+   KC ++  DN   + L+ N     RSKHI +RF  L +  +   + ++H  S DQLADI+TK     VF +LR
Sbjct:   84 VFLISSGAVAWSSKKQPVVTLSTTEAEFIVAASCARQAVWMRRILEKLGYNQSKCTDIFCDNSSIIKLSKNPVMHGRSKHIDVRFHFLGDLTKDGVVKLEHCGSKDQLADIMTKPLRLKVFVRLR 208          
BLAST of mRNA_H-paniculata_contig24340.6593.1 vs. uniprot
Match: A0A060SQN8_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SQN8_PYCCI)

HSP 1 Score: 92.4 bits (228), Expect = 3.010e-19
Identity = 46/124 (37.10%), Postives = 78/124 (62.90%), Query Frame = 1
Query:   10 LANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFELDKCEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRNWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 381
            LA G+  + SR+QK  A S+TEAE +A++ C++Q  ++ N+  E+G++L    +  DN+G L + +N    +RSKHI IR+ A+R +I + Q+ +  V  +D  AD+ TK+   V FT+ R ++
Sbjct:  399 LAGGVFSWQSRVQKTIAHSSTEAEYMAISDCSRQVVWIRNLLSEIGYQLGPIPIAGDNQGPLFMGSNPVTESRSKHIDIRYHAIREYIENKQIELFFVDGSDNPADLFTKNLGHVKFTKFRGQL 522          
BLAST of mRNA_H-paniculata_contig24340.6593.1 vs. uniprot
Match: A0A060SLG8_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SLG8_PYCCI)

HSP 1 Score: 91.7 bits (226), Expect = 6.210e-19
Identity = 45/124 (36.29%), Postives = 78/124 (62.90%), Query Frame = 1
Query:   10 LANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFELDKCEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRNWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 381
            LA G+  + SR QK  A S+TEAE +A++ C++Q  ++ N+  E+G++L    +  DN+G+L + +N    +RSKHI IR+ A+R +I + Q+ +  +  +D  AD+ TK+   V FT+ R ++
Sbjct:  621 LAGGVFSWQSRAQKTIAHSSTEAEYMAISDCSRQVVWIRNLLSEIGYQLGPIPIAGDNQGSLFMGSNPVTESRSKHIDIRYHAIREYIENKQVELFFIDGSDNPADLFTKNLGHVKFTKFRGQL 744          
BLAST of mRNA_H-paniculata_contig24340.6593.1 vs. uniprot
Match: A0A8J6HGY6_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HGY6_TENMO)

HSP 1 Score: 90.1 bits (222), Expect = 1.220e-18
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 MFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFE-LDKCEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRNWIRSNQLVIDHVASADQLADILTK 339
            +F L  G V + +R QK  A S+TEAE + LA   K+ +YL +   ELG + L    V  DN GAL LAAN  + NRSKHI I++  +R+ ++   L + HV+SA+ +AD+LTK
Sbjct:  261 VFMLGGGPVSWDARKQKTVALSSTEAEYMGLAEATKEASYLRSFLIELGLDHLSSVVVYEDNLGALKLAANPTFHNRSKHIDIKYHFIRDAVKEKILSLSHVSSAEMVADVLTK 374          
BLAST of mRNA_H-paniculata_contig24340.6593.1 vs. uniprot
Match: A0A8J6L9W6_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6L9W6_TENMO)

HSP 1 Score: 88.6 bits (218), Expect = 7.730e-18
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 MFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFE-LDKCEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRNWIRSNQLVIDHVASADQLADILTK 339
            +F L  G V + +R QK  A S+TEAE + LA   K+ +YL +   ELG + L    V  DN GAL LAAN  + NRSKHI I++  +R+ ++   L + HV+S + +AD+LTK
Sbjct: 1074 VFMLGGGPVSWDARKQKTVALSSTEAEYMGLAEATKEASYLRSFLIELGLDHLSSVVVYEDNLGALKLAANPTFHNRSKHIDIKYHFIRDAVKEKILSLSHVSSTEMVADVLTK 1187          
BLAST of mRNA_H-paniculata_contig24340.6593.1 vs. uniprot
Match: A0A085MTW9_9BILA (Integrase catalytic domain-containing protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085MTW9_9BILA)

HSP 1 Score: 87.8 bits (216), Expect = 1.380e-17
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = 1
Query:   16 NGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFELDKCEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRNWIRSNQLVIDHVASADQLADILTKHCERVVFTQLR 372
            + ++ + S  Q++TA ST EAE IA +  AK+  +L  + +ELG +L    ++ DN GA  L  N  +  R+KHIA+++  +R    +  L I+HVAS DQLADI+TK   RV F +LR
Sbjct:  604 DAIITWLSNKQQLTALSTCEAEYIAASEGAKEVIWLTGLLKELGIKLKTPMLKIDNAGAEKLVRNPEFHKRTKHIAVKYHFVREKFLNGDLDIEHVASTDQLADIMTKPLGRVRFRELR 722          
BLAST of mRNA_H-paniculata_contig24340.6593.1 vs. uniprot
Match: A0A4Y1R6X5_PRUDU (Toll-Interleukin-Resistance domain family protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R6X5_PRUDU)

HSP 1 Score: 83.6 bits (205), Expect = 2.780e-17
Identity = 42/113 (37.17%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 MFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFELDKCEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRNWIRSNQLVIDHVASADQLADILTK 339
            +F + N  V + S+LQKI   STTEAE +A+   +K+  +L  +  ELGF+ +K  + SD++ A+HLA NS + +R+KHI +R+  +R+ +    L ++ +  +   AD+LTK
Sbjct:   76 IFTVGNTAVSWMSQLQKIVTLSTTEAEYVAVTEASKEMIWLQGLLTELGFKQEKNVLHSDSQSAIHLAKNSAFHSRTKHIGLRYHFIRSLLEDEVLTLEKIQGSKNPADMLTK 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24340.6593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J897_9PHAE1.340e-2444.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF1_9PHAE1.820e-2444.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV56_9PHAE8.910e-2445.61Integrase catalytic domain-containing protein n=1 ... [more]
UPI00201A91CC1.710e-1938.40secreted RxLR effector protein 161-like n=1 Tax=Ri... [more]
A0A060SQN8_PYCCI3.010e-1937.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SLG8_PYCCI6.210e-1936.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J6HGY6_TENMO1.220e-1843.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J6L9W6_TENMO7.730e-1842.98Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A085MTW9_9BILA1.380e-1741.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1R6X5_PRUDU2.780e-1737.17Toll-Interleukin-Resistance domain family protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24340contigH-paniculata_contig24340:917..1315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.0
Seed ortholog evalue2.2e-16
Seed eggNOG ortholog15368.BRADI5G22850.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size399
Cds size399
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.6961854-CDS-H-paniculata_contig24340:916..13151622929702.6961854-CDS-H-paniculata_contig24340:916..1315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24340 917..1315 -
1691480973.659317-CDS-H-paniculata_contig24340:916..13151691480973.659317-CDS-H-paniculata_contig24340:916..1315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24340 917..1315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24340.6593.1prot_H-paniculata_contig24340.6593.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24340 917..1315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24340.6593.1

>prot_H-paniculata_contig24340.6593.1 ID=prot_H-paniculata_contig24340.6593.1|Name=mRNA_H-paniculata_contig24340.6593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGF
ELDKCEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRNWIRSNQLVIDH
VASADQLADILTKHCERVVFTQLRSKVLTFGK*
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mRNA from alignment at H-paniculata_contig24340:917..1315-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24340.6593.1 ID=mRNA_H-paniculata_contig24340.6593.1|Name=mRNA_H-paniculata_contig24340.6593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at H-paniculata_contig24340:917..1315- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTTCCTGGCAAACGGACTTGTACACTTCTCATCCCGACTACAGAA GATCACTGCTACAAGCACTACTGAGGCGGAGCTCATCGCACTAGCTGCAT GCGCTAAACAAGGGACTTACCTTCTGAACATTTGCCGAGAGCTCGGGTTT GAGCTGGATAAGTGTGAAGTGCGTTCGGACAACAGGGGCGCGCTCCACTT AGCAGCTAATAGCAATTACTCCAACCGCAGTAAACACATCGCCATCAGGT TCGCAGCACTAAGGAACTGGATCAGGAGCAATCAGCTTGTCATCGACCAT GTAGCAAGCGCTGATCAGCTAGCTGACATCCTCACCAAGCATTGCGAGAG AGTAGTGTTCACCCAGCTGCGGAGCAAAGTCTTGACCTTTGGAAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24340:917..1315-

>mRNA_H-paniculata_contig24340.6593.1 ID=mRNA_H-paniculata_contig24340.6593.1|Name=mRNA_H-paniculata_contig24340.6593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig24340:917..1315- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTTCCTGGCAAACGGACTTGTACACTTCTCATCCCGACTACAGAA
GATCACTGCTACAAGCACTACTGAGGCGGAGCTCATCGCACTAGCTGCAT
GCGCTAAACAAGGGACTTACCTTCTGAACATTTGCCGAGAGCTCGGGTTT
GAGCTGGATAAGTGTGAAGTGCGTTCGGACAACAGGGGCGCGCTCCACTT
AGCAGCTAATAGCAATTACTCCAACCGCAGTAAACACATCGCCATCAGGT
TCGCAGCACTAAGGAACTGGATCAGGAGCAATCAGCTTGTCATCGACCAT
GTAGCAAGCGCTGATCAGCTAGCTGACATCCTCACCAAGCATTGCGAGAG
AGTAGTGTTCACCCAGCTGCGGAGCAAAGTCTTGACCTTTGGAAAATGAA
TGTTCTTCCTGGCAAACGGACTTGTACACTTCTCATCCCGACTACAGAAG
ATCACTGCTACAAGCACTACTGAGGCGGAGCTCATCGCACTAGCTGCATG
CGCTAAACAAGGGACTTACCTTCTGAACATTTGCCGAGAGCTCGGGTTTG
AGCTGGATAAGTGTGAAGTGCGTTCGGACAACAGGGGCGCGCTCCACTTA
GCAGCTAATAGCAATTACTCCAACCGCAGTAAACACATCGCCATCAGGTT
CGCAGCACTAAGGAACTGGATCAGGAGCAATCAGCTTGTCATCGACCATG
TAGCAAGCGCTGATCAGCTAGCTGACATCCTCACCAAGCATTGCGAGAGA
GTAGTGTTCACCCAGCTGCGGAGCAAAGTCTTGACCTTTGGAAAATGA
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