mRNA_H-paniculata_contig24271.6576.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24271.6576.1
Unique NamemRNA_H-paniculata_contig24271.6576.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24271.6576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24271contigH-paniculata_contig24271:163..1961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size510
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24271.6576.1prot_H-paniculata_contig24271.6576.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24271 163..1889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.917244-CDS-H-paniculata_contig24271:162..2011622929699.917244-CDS-H-paniculata_contig24271:162..201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24271 163..201 +
1691480972.3206031-CDS-H-paniculata_contig24271:162..2011691480972.3206031-CDS-H-paniculata_contig24271:162..201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24271 163..201 +
1622929699.9397588-CDS-H-paniculata_contig24271:667..8891622929699.9397588-CDS-H-paniculata_contig24271:667..889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24271 668..889 +
1691480972.331054-CDS-H-paniculata_contig24271:667..8891691480972.331054-CDS-H-paniculata_contig24271:667..889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24271 668..889 +
1622929699.960408-CDS-H-paniculata_contig24271:1712..18891622929699.960408-CDS-H-paniculata_contig24271:1712..1889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24271 1713..1889 +
1691480972.344936-CDS-H-paniculata_contig24271:1712..18891691480972.344936-CDS-H-paniculata_contig24271:1712..1889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24271 1713..1889 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.9741595-UTR-H-paniculata_contig24271:1889..19611622929699.9741595-UTR-H-paniculata_contig24271:1889..1961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24271 1890..1961 +
1691480972.3532073-UTR-H-paniculata_contig24271:1889..19611691480972.3532073-UTR-H-paniculata_contig24271:1889..1961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24271 1890..1961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24271.6576.1

>prot_H-paniculata_contig24271.6576.1 ID=prot_H-paniculata_contig24271.6576.1|Name=mRNA_H-paniculata_contig24271.6576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
MFKTQERTETAEEALATAKGKSVKGHKEREQLRRELRGQAQAQGSLKKKL
AEARQDLAMAKGRVATGCHECPRKDREISDLQDTLSQVLANGCPPSNQTG
EAAGGAGVAWSLREGSGSASSSGKSRNQSGNEKVCSCIRRWTGCD*
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mRNA from alignment at H-paniculata_contig24271:163..1961+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24271.6576.1 ID=mRNA_H-paniculata_contig24271.6576.1|Name=mRNA_H-paniculata_contig24271.6576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1799bp|location=Sequence derived from alignment at H-paniculata_contig24271:163..1961+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCAAGACGCAAGAGCGGACGGAGACCGCAGAAGAGGTGTGTGTGTC
TATGTTTTTTTATTCATGTATTGTTTGATGGTGCGGTAAGGGGGTGCGTT
GTGACATTATCAAAATGAGAAGTGAATGTCCATTGATTCGAGAATCAAAC
AAAACGTTCGACGCTGGCATGTTTTTGGAAGCACTCTCTCCTGAGTTTTC
GAACGTTTTACGGGATCAATTTGCTGTGCTGTATTTGCTTTCTTTGGTTT
GGTTCGTACTTGGAGCCGTGCGGTTGCTTACAGAGTGTGTTTTCATTCGC
AAATAGAGGGCGAGATATTGGCACTCGTTGATATCAGTGGCCTGTGTGGG
AGAAGGGGTAGAGTGAAACAATCGTGAGACGGCTCGTGTGTGCGTGTGGG
TGACGTTGGCATAGCGCGTTTTGGCCTCGAGCATTCGCGTACTGTGGTTT
GCTTCCCTCGCCCAAAACCTCGTGCCTGTCATATATTTCATGGTCGGCTC
AGTAGGCCCTTGCTACGGCGAAGGGCAAGAGCGTCAAGGGTCATAAGGAG
CGGGAGCAGCTTCGAAGGGAGCTTCGGGGGCAAGCGCAGGCACAAGGTTC
TCTGAAGAAGAAACTGGCAGAGGCCCGCCAAGACCTGGCTATGGCGAAGG
GGAGGGTCGCCACCGGTTGCCATGAATGTCCGAGGAAGGACAGAGAAATT
TCGGACCTACAGGACACCCTTTCGCAGGTGTGTCTTTGTGCATGCGTTGG
GGGGGAAAGGATAGGGGTGTGTATGTGTTGTGTACTAGCCGTTATGCAGT
GACCGTCGGTCGGTTTCTCGTGTATGCGTATCTGAGTTAGTGGGACGTAC
GTACTTGGCAGAAGCCAAAAGTACAGAAACCGAAAGGATTATATCGATAA
AGGAGAGGCGGAGGAACAAATGCGAGATGTACACTCGTTAGTATGGCTTC
GGTGGGGGCATTTTTATGAGTATATAAGAGCTCTATCCTCTTACGGTCAA
ATCCACACAACTGTTGGATCATTTTCGTCCCTAGGGTGTAGGTACATGTT
GAATATATATATGACGACACTTGGTATTCCACTTTCATCAAAAGTAGGTG
CATTCGATGGCGCTATTGAAAGGAGTAAGCTTTCAAAGCTTACTCGTTAT
TCTGCGATTCGTCACATTGCGCTGGTTGTACGTAGCTGAAGTTACTTTCG
TCGGAAGACAAGCATGTTGGAAATGGTGCAATTGTTGACAGAAAGCACGC
ATGAACATGCTTAAGGAAGCTGATTGAGATATCATGAAACCCTCGGTGAT
TCCGCAGCGAACGAATCAAGAGTACAAGACGTCAGTGATAGATGGCACGG
TGCGCGATGTCAAAAAGCGAATGATGCCTATGCGAGAGTCGGTTCTCAGA
GCAAGCAGTCGGAGGAACGATTGACGGCGCACCGAGTGCGAACAGAGAAG
AAGACGCTTCTTTTCTACCCCTCAGTGTATGTCCTTTATTCTCAATTCAT
GTGCATATCCATGTCGTGCGTATCTATTCTCGACTGACAACGCCGACCAG
GTGCTCGCGAACGGGTGCCCGCCGAGCAACCAGACGGGAGAGGCAGCAGG
AGGAGCTGGGGTCGCTTGGAGCCTGCGCGAGGGCTCGGGGTCAGCTTCTT
CCTCTGGAAAGTCGAGGAACCAATCGGGAAATGAGAAGGTTTGTAGCTGC
ATCAGAAGGTGGACCGGGTGTGATTAGAGTGGTTGTTGGGTACGTCGCAG
GTGTTGGATCAGGTCGAACGGCGTGTGCGGAGGGGTCGTTTCATGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig24271:163..1961+

>mRNA_H-paniculata_contig24271.6576.1 ID=mRNA_H-paniculata_contig24271.6576.1|Name=mRNA_H-paniculata_contig24271.6576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig24271:163..1961+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCAAGACGCAAGAGCGGACGGAGACCGCAGAAGAGATGTTCAAGAC
GCAAGAGCGGACGGAGACCGCAGAAGAGGCCCTTGCTACGGCGAAGGGCA
AGAGCGTCAAGGGTCATAAGGAGCGGGAGCAGCTTCGAAGGGAGCTTCGG
GGGCAAGCGCAGGCACAAGGTTCTCTGAAGAAGAAACTGGCAGAGGCCCG
CCAAGACCTGGCTATGGCGAAGGGGAGGGTCGCCACCGGTTGCCATGAAT
GTCCGAGGAAGGACAGAGAAATTTCGGACCTACAGGACACCCTTTCGCAG
GCCCTTGCTACGGCGAAGGGCAAGAGCGTCAAGGGTCATAAGGAGCGGGA
GCAGCTTCGAAGGGAGCTTCGGGGGCAAGCGCAGGCACAAGGTTCTCTGA
AGAAGAAACTGGCAGAGGCCCGCCAAGACCTGGCTATGGCGAAGGGGAGG
GTCGCCACCGGTTGCCATGAATGTCCGAGGAAGGACAGAGAAATTTCGGA
CCTACAGGACACCCTTTCGCAGGTGCTCGCGAACGGGTGCCCGCCGAGCA
ACCAGACGGGAGAGGCAGCAGGAGGAGCTGGGGTCGCTTGGAGCCTGCGC
GAGGGCTCGGGGTCAGCTTCTTCCTCTGGAAAGTCGAGGAACCAATCGGG
AAATGAGAAGGTTTGTAGCTGCATCAGAAGGTGGACCGGGTGTGATTAGG
TGCTCGCGAACGGGTGCCCGCCGAGCAACCAGACGGGAGAGGCAGCAGGA
GGAGCTGGGGTCGCTTGGAGCCTGCGCGAGGGCTCGGGGTCAGCTTCTTC
CTCTGGAAAGTCGAGGAACCAATCGGGAAATGAGAAGGTTTGTAGCTGCA
TCAGAAGGTGGACCGGGTGTGATTAG
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