mRNA_H-paniculata_contig2405.6510.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2405.6510.1 vs. uniprot
Match: D8LMM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM2_ECTSI) HSP 1 Score: 322 bits (826), Expect = 3.250e-91 Identity = 283/749 (37.78%), Postives = 362/749 (48.33%), Query Frame = 1
Query: 436 WGFLCVDGCVLAWEQGMVTAERAGAATGADQSFLRFDHPTMVNELMAMEAPEVPVEAADLVALSQPWRACEGRRELLIVSPGGLVRYWPDVRSPRRFTDVDLKKTVITPEQLVTRVAAIGPAEFVCGLSQGGVVRLRPGVASPCLLTEGT-SVLSQGFGIVKKVGDGNSSLSSSSITASNNKCPVVALATVPPPRSTSRRLGAGAXXXXXXXXXSATRLLRLTTETLEVWSVHGAAYGMQSLEARYPLLASVQAALGGGRGGKAYLVDLAVAGDARIVSPSGDAATSAPGFEVEVLVLAISVEAAEGWGVE-----------------------------GTEGGGSGGWDGAFSLHVVRVSSAAASWVGTSSNYSELSCSLSHVFLCVSASSFCTVHGRPGHYPPETCYASDSQLYVAFSAKPFPRATLVIDREAFFAPGNGGGRGWSGXXXGDSGSTVRAHVYWPAVAM--AGGRESGLAAA-VTSVTAKLLG------------EAVTWEEGGALDVPRYLALFRGCVGGGAALRGCPGLMLLSPQGQAIWVAPREDGGGPSQVRGEDGGRVMDL-EAPWVTS----EQAVQEWKKVILNG-LGTYEGGGAMDNARLNVEALLRRDAAVGVVRG------NLDAAVTKVLQLTSTPAXXXXXXXXXXXXXXQAGLEVLNGSWRQPAAFASPHQLVHLALREKTRHHRALIRFLLDAGAWGSAVAGRAALAEGGEKVAAAGRLCELQ 2511
W F+C D VLAWEQGMV AER GAA AD++ L+F+HP M++EL AM AP GG + VTRV A+GP +F+CGLS+GG++RLRPG+ +P LLT+ T SVL +GF ++++G G ++ ++++ AS + PVVAL+ PP + + +R++RLTT+TLEVWS+ G G LE R+PL + +Q ALG + A L+D+AV G VSP P V WG+E +GG S+H VRVS ASWVG+S + +S SH GR G P AS+ + RATLV D E F+ G+G G XXX + AHV+WP+ A R G A A V SV K G + WEE G++ V AL GCVGGG AL GCPG++LLS QGQA+WVAPR P G +DL P V + +EW+ ++ G L +E G MD ARL V +LL R AA RG +LD+A+ + A QAGLEVLNGSWR P+AFASPHQLVHLALREK R RAL+R LLDAGAWG++ GRAAL+E GEKVAAA RLCELQ
Sbjct: 28 WAFMCTDTGVLAWEQGMVAAERPGAAVRADEACLQFEHPAMMHEL-AMMAPL-----------------------------GGKIA--------------------------VTRVVALGPTDFLCGLSRGGILRLRPGLDAPILLTQKTTSVLGRGFSTIRRMG-GEATAAAATTAASAS--PVVALSVARPPGGSPAGI--------------PSRVVRLTTDTLEVWSI-GVGGGTPCLEVRHPLASQIQRALGVRQ---ACLLDVAVTGAPTTVSPP-------PAXXXXXXXXXXVVS----WGLELLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGG-------ELSVHAVRVSCGEASWVGSSVSVQVIS---SHHVSTTXXXXXXXXXGRRGRQPAFRAAASNPSAPASLGPG-CRRATLVADNEQAFSTGDGTRVGGXXXXX-----XIGAHVFWPSSTSPDASVRGGGTATAQVWSVCVKDRGGDGASXXXXXXXXXIEWEERGSVTVSSRTALSGGCVGGGGALLGCPGVVLLSSQGQAVWVAPRHTES-PXXXXXATAGLAVDLGPRPEVVAAIPGNDTSEEWRMALVEGGLRAFEDGETMDPARLAVGSLLGR-AAQETGRGAMSSTEDLDSAIVWGWEGPKPVAARGKGHI-------QAGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLLDAGAWGASSVGRAALSECGEKVAAASRLCELQ 663
BLAST of mRNA_H-paniculata_contig2405.6510.1 vs. uniprot
Match: A0A6H5JHH9_9PHAE (Nucleoporin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH9_9PHAE) HSP 1 Score: 242 bits (617), Expect = 2.870e-63 Identity = 254/755 (33.64%), Postives = 319/755 (42.25%), Query Frame = 1
Query: 373 ATAGAQASSSHMCSGRVLDHGWGFLCVDGCVLAWEQGMVTAERAGAATGADQSFLRFDHPTMVNELMAMEAPEVPVEAADLVALSQPWRACEGRRELLIVSPGGLVRYWPDVRSPRRFTDVDLKKTVITPEQLVTRVAAIGPAEFVCGLSQGGVVRLRPGVASPCLLTEGTSVLSQGFGIVKKVGDGNSSLSSSSITASNNKCPVVALATVPPPRSTSRRLGAGAXXXXXXXXXSATRLLRLTTETLEVWSVHGAAYGMQSLEARYPLLASVQAALGGGRGGKAYLVDLAVAGDARIVSPS---GDAATSAP--GFEVEVLVLAISVEAAEGWGVEGTEGGGSGGWDGAFSLHVVRVSSAAASWVGTSSNYSELSCSLSHVFLCVSASSFC--TVHGRPGHYPPETCYASDSQLYVAFSAKPFPRATLVIDREAFFAPGNGGGRGWSGXXXGDSGSTVRAHVYWPA-----VAMAGGRESGLAAAVTSVTAKLLGEAVTWEEGGA------------------LDVPRYLALFRGCVGGGAALRGCPGLMLLSPQGQAIWVAPREDGGGPSQVRGEDGGRVMDL-EAPWVTSE----QAVQEWKKVILNG-LGTYEGGGAMDNARLNVEALLRRDAAVGVVRG------NLDAAVTKVLQLTSTPAXXXXXXXXXXXXXXQAGLEVLNGSWRQPAAFASPHQLVHLALREKTRHHRALIRFLLDAGAWGSAVAGRAALAEGGEKVAAAGRLCELQ 2511
ATA +C+GRVL HGW F+C D VLAWEQGMV AER GAA ADQ LRF+HP M++EL A+ AP GG + A+G E + G+S + +R AS G G + R GA A R++RLTT+ LEVWSV G G LE +PL + +Q ALG + A L+D+AV G VSPS G+A+ S P + +E+LVLA + G S+H VRVSS ASWVG+S + +S SH SA++ R G P A + + RATLV D E F+ G+G G G + AHV+WP+ V++ GG + A V SV K W GA AL GCPG++LLS QGQA+WVAPR S G +DL P V + +EWK ++ G L +E G MD RL + +LL R AA RG N+D+A+ + AGLEVLNGSWR P+AFASPHQLVHLALREK R RAL+R L+DAGAWG+ GRAAL+E GEKVAAA RLCELQ
Sbjct: 7 ATAETSGGRGCLCTGRVLSHGWAFMCTDTGVLAWEQGMVAAERPGAAVRADQVCLRFEHPAMMHEL-ALMAPL-----------------------------GGKI--------------------------------AVGFCELLSGMS--ATLGMRVSKAS-------------GRGALDHF-----------------------------------RAGARVFQNQEDGGIPA-RVVRLTTDILEVWSVGGGG-GTPCLEVCHPLASQIQRALGVRQ---ACLLDVAVTGAPTTVSPSPASGEASASPPVVSWGLELLVLAAAGAXXXXXRYXXXXXXXXXGDGRELSVHAVRVSSGEASWVGSSVSVQVIS---SHHVTTTSATATAEAVAAARRGRQPAFPAAAPNPPAPASLGPG-CRRATLVADNEQAFSTGDG-------TRVGGGGGGIVAHVFWPSSPSPDVSVEGGGTA--TAQVWSVCVK------AWGGDGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLGCPGVVLLSRQGQAVWVAPRHT---ESPAAAAAAGLAVDLGPCPEVFASIPGNDTSEEWKMALVEGGLRAFEEGKTMDPTRLAMGSLLGR-AAQETGRGAMASTENIDSAIVR------------------------AGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLMDAGAWGALSVGRAALSECGEKVAAASRLCELQ 597
BLAST of mRNA_H-paniculata_contig2405.6510.1 vs. uniprot
Match: A0A835YV83_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV83_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 5.860e-9 Identity = 62/208 (29.81%), Postives = 99/208 (47.60%), Query Frame = 1
Query: 292 PKQAGARR-SDTLIETDYHAVMKAGAIPAT---AGAQASSSHMCSGRVLDH-GWGFLCVDGCVLAWEQGMVTAERAGAATGADQSFLRFDHPTMVNELMAM--EAPEVPVEAADLVALSQPWRACEGRRELLIVSPGGLVRYWPDVRSPRRFTDVDLKKTVITPEQLVTRVAAIGPAEFVCGLSQGGVVRLRPGVASPCLLTEGTSVL 894
P ++G RR + +E H V +PAT A A +VL W L + G + WEQ +V + +G A GA + + + P ++E++ ++ D+V P G +ELL+++P G R+W DVR P+ D ++ + P++ VT V + EFVCGLS G + LRP +++P L S L
Sbjct: 37 PGRSGIRRWRQSPLEHKSHIVDTCNRLPATVRVALESADGGQPIGAKVLTTPSWAVLSLGGRLYVWEQ-LVAPDHSGGA-GAPLAHV-LELPGGMDEVVGGGGAVSTDAMQRVDMVEAGGPG----GAKELLVLTPRGAGRHWRDVRRPQHNVDTEV---ALGPDEFVTCVVGVNRGEFVCGLSSGAAMWLRPTLSAPVRLAPARSRL 234 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2405.6510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2405.6510.1 >prot_H-paniculata_contig2405.6510.1 ID=prot_H-paniculata_contig2405.6510.1|Name=mRNA_H-paniculata_contig2405.6510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=804bp MSSEEIGMTTLDVPAFFNVVARRSGDPTTEELHARSSSSAKRFNRGKPLGback to top mRNA from alignment at H-paniculata_contig2405:541..21381+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2405.6510.1 ID=mRNA_H-paniculata_contig2405.6510.1|Name=mRNA_H-paniculata_contig2405.6510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=20841bp|location=Sequence derived from alignment at H-paniculata_contig2405:541..21381+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2405:541..21381+ >mRNA_H-paniculata_contig2405.6510.1 ID=mRNA_H-paniculata_contig2405.6510.1|Name=mRNA_H-paniculata_contig2405.6510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4824bp|location=Sequence derived from alignment at H-paniculata_contig2405:541..21381+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |