mRNA_H-paniculata_contig2403.6504.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2403.6504.1
Unique NamemRNA_H-paniculata_contig2403.6504.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2403.6504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2403contigH-paniculata_contig2403:8372..8708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929690.012184-UTR-H-paniculata_contig2403:8371..83721622929690.012184-UTR-H-paniculata_contig2403:8371..8372Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2403 8372..8372 +
1691480968.5238087-UTR-H-paniculata_contig2403:8371..83721691480968.5238087-UTR-H-paniculata_contig2403:8371..8372Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2403 8372..8372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929690.0263736-CDS-H-paniculata_contig2403:8372..87081622929690.0263736-CDS-H-paniculata_contig2403:8372..8708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2403 8373..8708 +
1691480968.5330951-CDS-H-paniculata_contig2403:8372..87081691480968.5330951-CDS-H-paniculata_contig2403:8372..8708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2403 8373..8708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2403.6504.1prot_H-paniculata_contig2403.6504.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2403 8373..8708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2403.6504.1

>prot_H-paniculata_contig2403.6504.1 ID=prot_H-paniculata_contig2403.6504.1|Name=mRNA_H-paniculata_contig2403.6504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MLPGETGSRGDTACSMRVGSRSRNVVRSKHFDFCSVVDRLPIQGRTQLES
YSDKGQTTIGHCVGDQGSGNPGTPGTCSPHQYSRSRMCAWLAASSAFLAA
WGRRESLCVAAR
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mRNA from alignment at H-paniculata_contig2403:8372..8708+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2403.6504.1 ID=mRNA_H-paniculata_contig2403.6504.1|Name=mRNA_H-paniculata_contig2403.6504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=337bp|location=Sequence derived from alignment at H-paniculata_contig2403:8372..8708+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCTCCCGGGAGAGACTGGTTCTCGAGGGGACACCGCCTGCTCTATGC
GGGTCGGTTCCAGATCTCGGAATGTAGTGCGGAGCAAGCATTTTGATTTT
TGTTCTGTCGTAGATAGATTACCCATCCAGGGTCGGACACAGCTAGAAAG
CTATTCCGACAAGGGACAAACTACCATTGGTCATTGTGTAGGGGACCAGG
GTTCAGGAAACCCAGGAACCCCAGGAACGTGCTCTCCACATCAGTATTCG
AGATCGCGAATGTGCGCTTGGCTGGCGGCAAGCTCTGCGTTCCTAGCCGC
GTGGGGCCGCCGTGAGTCGCTGTGCGTGGCGGCTCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2403:8372..8708+

>mRNA_H-paniculata_contig2403.6504.1 ID=mRNA_H-paniculata_contig2403.6504.1|Name=mRNA_H-paniculata_contig2403.6504.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig2403:8372..8708+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCCGGGAGAGACTGGTTCTCGAGGGGACACCGCCTGCTCTATGCG
GGTCGGTTCCAGATCTCGGAATGTAGTGCGGAGCAAGCATTTTGATTTTT
GTTCTGTCGTAGATAGATTACCCATCCAGGGTCGGACACAGCTAGAAAGC
TATTCCGACAAGGGACAAACTACCATTGGTCATTGTGTAGGGGACCAGGG
TTCAGGAAACCCAGGAACCCCAGGAACGTGCTCTCCACATCAGTATTCGA
GATCGCGAATGTGCGCTTGGCTGGCGGCAAGCTCTGCGTTCCTAGCCGCG
TGGGGCCGCCGTGAGTCGCTGTGCGTGGCGGCTCGCATGCTCCCGGGAGA
GACTGGTTCTCGAGGGGACACCGCCTGCTCTATGCGGGTCGGTTCCAGAT
CTCGGAATGTAGTGCGGAGCAAGCATTTTGATTTTTGTTCTGTCGTAGAT
AGATTACCCATCCAGGGTCGGACACAGCTAGAAAGCTATTCCGACAAGGG
ACAAACTACCATTGGTCATTGTGTAGGGGACCAGGGTTCAGGAAACCCAG
GAACCCCAGGAACGTGCTCTCCACATCAGTATTCGAGATCGCGAATGTGC
GCTTGGCTGGCGGCAAGCTCTGCGTTCCTAGCCGCGTGGGGCCGCCGTGA
GTCGCTGTGCGTGGCGGCTCGC
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