mRNA_H-paniculata_contig23991.6490.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23991.6490.1
Unique NamemRNA_H-paniculata_contig23991.6490.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23991.6490.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.670e-22
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 IKLFEDNAGAQSLAGNPRSSSRSRHVDIRYHFIRDLVKVGKVSVHHVDSKDQHADILTQALPLQIFRDHRRVLMNLS 231
            IK+ EDN GA +LA NP SS R +H+D+R+HF+R L + G++ + HV SK+QHADILT+ALP ++F  HR  ++ LS
Sbjct:  156 IKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVHRNFVLGLS 232
[Close]
BLAST of mRNA_H-paniculata_contig23991.6490.1 vs. uniprot
Match: A0A6H5KEN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN1_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.150e-22
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    4 KLFEDNAGAQSLAGNPRSSSRSRHVDIRYHFIRDLVKVGKVSVHHVDSKDQHADILTQALPLQIFRDHRRVLMNLS 231
            K+ EDN GA +LA NP SS RS+H+D+R+HF+R L + G++ + HV SK+QHA ILT+ALP ++F  HR  ++ LS
Sbjct:   52 KVLEDNEGAIALADNPLSSGRSKHIDVRHHFLRSLTEEGRIKISHVSSKEQHAAILTKALPRELFEVHRNFVLGLS 127
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BLAST of mRNA_H-paniculata_contig23991.6490.1 vs. uniprot
Match: A0A6H5KU04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU04_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.650e-22
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 IKLFEDNAGAQSLAGNPRSSSRSRHVDIRYHFIRDLVKVGKVSVHHVDSKDQHADILTQALPLQIFRDHRRVLMNL 228
            IK+ EDN GA SL  NP SS+RS+H+D+R+HFIR+L K G++SV ++ + +QHAD+LT+AL      DHR  LMN+
Sbjct:   34 IKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNM 109
[Close]
BLAST of mRNA_H-paniculata_contig23991.6490.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.490e-21
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 IKLFEDNAGAQSLAGNPRSSSRSRHVDIRYHFIRDLVKVGKVSVHHVDSKDQHADILTQALPLQIFRDHRRVLMNLS 231
            IK+ EDN GA +LA NP SS R +H+D+R+HF+R L + G++ + HV SK+QHADILT+ALP ++F  HR  ++ LS
Sbjct:  602 IKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVHRNFVLGLS 678
[Close]
BLAST of mRNA_H-paniculata_contig23991.6490.1 vs. uniprot
Match: A0A6H5KVG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG7_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.540e-20
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 IKLFEDNAGAQSLAGNPRSSSRSRHVDIRYHFIRDLVKVGKVSVHHVDSKDQHADILTQALPLQIFRDHRRVLMNL 228
            I++ EDN GA +L  NP SS+RS+H+D+R+HFIR+L K G++SV +V + +QHAD+LT+AL       HR+ LMNL
Sbjct:   61 IQVREDNQGAMTLVQNPLSSARSKHIDVRFHFIRELFKSGRISVEYVSTDEQHADLLTKALCRVKLEYHRKALMNL 136
[Close]
BLAST of mRNA_H-paniculata_contig23991.6490.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.940e-20
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 IKLFEDNAGAQSLAGNPRSSSRSRHVDIRYHFIRDLVKVGKVSVHHVDSKDQHADILTQALPLQIFRDHR 210
            I +FEDN GA +LA NP SSSRS+H+D+R+HF+R+L + G + V HV SK+QHADILT+ALP  +F  HR
Sbjct:  308 IDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEFHR 377
[Close]
BLAST of mRNA_H-paniculata_contig23991.6490.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.120e-20
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 IKLFEDNAGAQSLAGNPRSSSRSRHVDIRYHFIRDLVKVGKVSVHHVDSKDQHADILTQALPLQIFRDHRRVLMNLS 231
            I +FEDN GA +LA NP SSSRS+H+D+R+HF+R+L + G + V HV SK+QHADILT+ALP  +F  HR +  + S
Sbjct:  475 IDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEVHRLIQHSTS 551
[Close]
BLAST of mRNA_H-paniculata_contig23991.6490.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.150e-20
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 IKLFEDNAGAQSLAGNPRSSSRSRHVDIRYHFIRDLVKVGKVSVHHVDSKDQHADILTQALPLQIFRDHRRVLM 222
            I +FEDN GA +LA NP SSSRS+H+D+R+HF+R+L + G + V HV SK+QHADILT+ALP  +F  HR +++
Sbjct: 1203 IDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFEVHRDLVL 1276
[Close]
BLAST of mRNA_H-paniculata_contig23991.6490.1 vs. uniprot
Match: A0A6H5KQX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.350e-20
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 IKLFEDNAGAQSLAGNPRSSSRSRHVDIRYHFIRDLVKVGKVSVHHVDSKDQHADILTQALPLQIFRDHRRVLMNL 228
            IK+ EDN GA +L  NP SS+RS+H+D+R+HFIR+L K GK++  +V + +QHAD+LT+ L  +    HR+ LMNL
Sbjct:   32 IKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGREKLEYHRKALMNL 107
[Close]
BLAST of mRNA_H-paniculata_contig23991.6490.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.560e-20
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 IKLFEDNAGAQSLAGNPRSSSRSRHVDIRYHFIRDLVKVGKVSVHHVDSKDQHADILTQALPLQIFRDHRRVLMNL 228
            IK+ EDN GA SL  NP SS+RS+H+D+R+HFIR+L K G++SV ++ + +QHAD+LT+AL      DHR  LMN+
Sbjct:  294 IKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNI 369
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23991.6490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW47_9PHAE1.670e-2253.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEN1_9PHAE2.150e-2252.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU04_9PHAE2.650e-2253.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV1_9PHAE3.490e-2153.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KVG7_9PHAE2.540e-2052.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRE7_9PHAE2.940e-2060.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE3.120e-2055.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE3.150e-2056.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX9_9PHAE3.350e-2051.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE3.560e-2053.95Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23991contigH-paniculata_contig23991:3268..3504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score79.3
Seed ortholog evalue8.7e-13
Seed eggNOG ortholog6334.EFV48027
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.5136197-CDS-H-paniculata_contig23991:3267..35041622929686.5136197-CDS-H-paniculata_contig23991:3267..3504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23991 3268..3504 +
1691480967.2400384-CDS-H-paniculata_contig23991:3267..35041691480967.2400384-CDS-H-paniculata_contig23991:3267..3504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23991 3268..3504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23991.6490.1prot_H-paniculata_contig23991.6490.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23991 3268..3504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23991.6490.1

>prot_H-paniculata_contig23991.6490.1 ID=prot_H-paniculata_contig23991.6490.1|Name=mRNA_H-paniculata_contig23991.6490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
IKLFEDNAGAQSLAGNPRSSSRSRHVDIRYHFIRDLVKVGKVSVHHVDSK
DQHADILTQALPLQIFRDHRRVLMNLSN*
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mRNA from alignment at H-paniculata_contig23991:3268..3504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23991.6490.1 ID=mRNA_H-paniculata_contig23991.6490.1|Name=mRNA_H-paniculata_contig23991.6490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at H-paniculata_contig23991:3268..3504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAGTTGTTCGAGGACAATGCGGGGGCACAATCTTTGGCTGGAAACCC
GCGGAGCTCTAGTCGGAGTAGACACGTTGATATAAGATATCATTTCATTC
GCGACCTGGTGAAGGTTGGAAAGGTGTCGGTGCACCATGTCGATTCAAAA
GACCAGCACGCTGATATTCTTACCCAAGCTCTTCCTTTACAGATTTTTAG
GGATCACAGAAGAGTTTTGATGAATTTATCCAACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig23991:3268..3504+

>mRNA_H-paniculata_contig23991.6490.1 ID=mRNA_H-paniculata_contig23991.6490.1|Name=mRNA_H-paniculata_contig23991.6490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig23991:3268..3504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAGTTGTTCGAGGACAATGCGGGGGCACAATCTTTGGCTGGAAACCC
GCGGAGCTCTAGTCGGAGTAGACACGTTGATATAAGATATCATTTCATTC
GCGACCTGGTGAAGGTTGGAAAGGTGTCGGTGCACCATGTCGATTCAAAA
GACCAGCACGCTGATATTCTTACCCAAGCTCTTCCTTTACAGATTTTTAG
GGATCACAGAAGAGTTTTGATGAATTTATCCAACTGAATCAAGTTGTTCG
AGGACAATGCGGGGGCACAATCTTTGGCTGGAAACCCGCGGAGCTCTAGT
CGGAGTAGACACGTTGATATAAGATATCATTTCATTCGCGACCTGGTGAA
GGTTGGAAAGGTGTCGGTGCACCATGTCGATTCAAAAGACCAGCACGCTG
ATATTCTTACCCAAGCTCTTCCTTTACAGATTTTTAGGGATCACAGAAGA
GTTTTGATGAATTTATCCAACTGA
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