mRNA_H-paniculata_contig23925.6471.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23925.6471.1
Unique NamemRNA_H-paniculata_contig23925.6471.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23925.6471.1 vs. uniprot
Match: A0A6H5L328_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L328_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 3.840e-39
Identity = 73/84 (86.90%), Postives = 82/84 (97.62%), Query Frame = 1 
Query:    4 QVSEGGENMSLGQRQLVCLARAVLRRNKILVMDEATANVDMETDALIQEAIREQFAGCTVLTIAHRLNTIMDMDRILVMRNGKV 255
            +VSEGGEN+SLGQRQLVCLARAVLRRNKILVMDEATANVD++TD+LIQEAIR++F+GCTVLTIAHRLNTIMD DRILVM +GKV
Sbjct: 1443 EVSEGGENLSLGQRQLVCLARAVLRRNKILVMDEATANVDVDTDSLIQEAIRQEFSGCTVLTIAHRLNTIMDSDRILVMEDGKV 1526
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BLAST of mRNA_H-paniculata_contig23925.6471.1 vs. uniprot
Match: A0A0K8TLH7_TABBR (Putative multidrug resistance-associated protein/mitoxantrone resistance protein (Fragment) n=1 Tax=Tabanus bromius TaxID=304241 RepID=A0A0K8TLH7_TABBR)

HSP 1 Score: 134 bits (336), Expect = 1.350e-37
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    7 VSEGGENMSLGQRQLVCLARAVLRRNKILVMDEATANVDMETDALIQEAIREQFAGCTVLTIAHRLNTIMDMDRILVMRNGKVCHDDHKYL 279
            +SEGG N S+GQRQLVCLARA+LR NKILVMDEATANVD +TDALIQ  IR +F  CTVLTIAHRL+T+MD D++LVM  G+V   DH Y+
Sbjct:   45 ISEGGSNFSVGQRQLVCLARAILRENKILVMDEATANVDPQTDALIQTTIRNKFVNCTVLTIAHRLHTVMDSDKVLVMDAGRVVEFDHPYI 135
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BLAST of mRNA_H-paniculata_contig23925.6471.1 vs. uniprot
Match: UPI0006268FD2 (probable multidrug resistance-associated protein lethal(2)03659 n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI0006268FD2)

HSP 1 Score: 142 bits (359), Expect = 4.010e-37
Identity = 77/116 (66.38%), Postives = 90/116 (77.59%), Query Frame = 1 
Query:    1 HQVSEGGENMSLGQRQLVCLARAVLRRNKILVMDEATANVDMETDALIQEAIREQFAGCTVLTIAHRLNTIMDMDRILVMRNGKVCHDDHKYLFSIYEVSNGGPSSNHLALTGQSM 348
            H V+EGG N S GQRQLVCLARA+LR NKILV+DEATANVD  TD+LIQ  IR++FA CTVLTIAHRLNTIMD DR+LVM +G+V   DH +L  + +  NG  SS  LA TG+SM
Sbjct: 1233 HMVNEGGSNFSAGQRQLVCLARAILRNNKILVLDEATANVDPSTDSLIQNTIRKEFANCTVLTIAHRLNTIMDSDRVLVMDHGEVVEFDHPHL--LLQDENGHFSS-MLAKTGKSM 1345
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BLAST of mRNA_H-paniculata_contig23925.6471.1 vs. uniprot
Match: UPI001E68A92B (uncharacterized protein LOC123864713 n=1 Tax=Maniola jurtina TaxID=191418 RepID=UPI001E68A92B)

HSP 1 Score: 142 bits (357), Expect = 7.640e-37
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:    7 VSEGGENMSLGQRQLVCLARAVLRRNKILVMDEATANVDMETDALIQEAIREQFAGCTVLTIAHRLNTIMDMDRILVMRNGKVCHDDHKYL 279
            VSEGG N S+GQRQLVCLARAVLR NKILVMDEATANVD +TDALIQ  IR QFA CTVLTIAHRLNTIMD DRILVM NG+V   DH ++
Sbjct: 2931 VSEGGTNFSVGQRQLVCLARAVLRSNKILVMDEATANVDPQTDALIQTTIRRQFASCTVLTIAHRLNTIMDSDRILVMDNGEVAEFDHPHI 3021
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BLAST of mRNA_H-paniculata_contig23925.6471.1 vs. uniprot
Match: A0A814ITU6_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814ITU6_9BILA)

HSP 1 Score: 136 bits (342), Expect = 9.120e-37
Identity = 69/115 (60.00%), Postives = 86/115 (74.78%), Query Frame = 1 
Query:    1 HQVSEGGENMSLGQRQLVCLARAVLRRNKILVMDEATANVDMETDALIQEAIREQFAGCTVLTIAHRLNTIMDMDRILVMRNGKVCHDDHKYLFS------IYE-VSNGGPSSNH 324
            HQ++EGG N S+GQRQL+CL RA+LRRNKILV+DEATANVDM+TD LIQ++IR++F  CTVLTIAHRL T++D D+ILV+ NG +   DH YL         YE +S G  S  H
Sbjct:  168 HQITEGGTNFSVGQRQLICLVRALLRRNKILVIDEATANVDMKTDNLIQQSIRQKFKNCTVLTIAHRLRTVIDNDKILVLSNGCIVEFDHPYLLLCDTNSYFYEMISQGNKSEAH 282
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BLAST of mRNA_H-paniculata_contig23925.6471.1 vs. uniprot
Match: UPI0015685D5D (multidrug resistance-associated protein 4-like n=1 Tax=Aphantopus hyperantus TaxID=2795564 RepID=UPI0015685D5D)

HSP 1 Score: 141 bits (356), Expect = 1.020e-36
Identity = 72/91 (79.12%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    7 VSEGGENMSLGQRQLVCLARAVLRRNKILVMDEATANVDMETDALIQEAIREQFAGCTVLTIAHRLNTIMDMDRILVMRNGKVCHDDHKYL 279
            VSEGG N S+GQRQLVCLARAVLR NKILVMDEATANVD +TDALIQ  IR QFA CTVLTIAHRLNTIMD DRILVM  G+V   DH Y+
Sbjct: 1211 VSEGGTNFSVGQRQLVCLARAVLRSNKILVMDEATANVDPQTDALIQTTIRRQFASCTVLTIAHRLNTIMDSDRILVMDKGEVAEFDHPYI 1301
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BLAST of mRNA_H-paniculata_contig23925.6471.1 vs. uniprot
Match: A0A1B6LUH8_9HEMI (ABC transporter domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6LUH8_9HEMI)

HSP 1 Score: 133 bits (334), Expect = 1.120e-36
Identity = 63/91 (69.23%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    7 VSEGGENMSLGQRQLVCLARAVLRRNKILVMDEATANVDMETDALIQEAIREQFAGCTVLTIAHRLNTIMDMDRILVMRNGKVCHDDHKYL 279
            V EGG N+S+GQRQL+CLARA++R NKILV+DEATANVD++TDALIQ+ IR +FA CTVLTIAHRLNT+MD D+ILVM NG +   DH ++
Sbjct:   96 VVEGGSNLSVGQRQLMCLARAIVRNNKILVLDEATANVDLQTDALIQKTIRHRFADCTVLTIAHRLNTVMDSDKILVMSNGCLVEFDHPHV 186
[Close]
BLAST of mRNA_H-paniculata_contig23925.6471.1 vs. uniprot
Match: UPI000763732D (probable multidrug resistance-associated protein lethal(2)03659 n=1 Tax=Diuraphis noxia TaxID=143948 RepID=UPI000763732D)

HSP 1 Score: 132 bits (332), Expect = 1.340e-36
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    7 VSEGGENMSLGQRQLVCLARAVLRRNKILVMDEATANVDMETDALIQEAIREQFAGCTVLTIAHRLNTIMDMDRILVMRNGKVCHDDHKY 276
            +SEGG N S+GQRQLVCLARA++RRNKILV+DEATANVD +T+ALIQ  IR +F  CTVLTIAHRLNT+MD DR+LVM  G +   DH Y
Sbjct:   73 MSEGGSNFSVGQRQLVCLARAIVRRNKILVLDEATANVDSQTBALIQNTIRNKFRSCTVLTIAHRLNTVMDSDRVLVMDAGTMVEFDHPY 162
[Close]
BLAST of mRNA_H-paniculata_contig23925.6471.1 vs. uniprot
Match: A0A6G0Y5C3_APHCR (ABC transporter domain-containing protein (Fragment) n=2 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0Y5C3_APHCR)

HSP 1 Score: 130 bits (328), Expect = 1.420e-36
Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:    7 VSEGGENMSLGQRQLVCLARAVLRRNKILVMDEATANVDMETDALIQEAIREQFAGCTVLTIAHRLNTIMDMDRILVMRNGKVCHDDHKY 276
            +SEGG N S+GQRQLVCLARA++R NKILV+DEATANVD +TDALIQ  IR +F  CTVLTIAHRLNT+MD DR+LVM  G +   DH Y
Sbjct:   24 MSEGGSNFSVGQRQLVCLARAIVRSNKILVLDEATANVDSQTDALIQNTIRNKFRSCTVLTIAHRLNTVMDSDRVLVMDAGTMVEFDHPY 113
[Close]
BLAST of mRNA_H-paniculata_contig23925.6471.1 vs. uniprot
Match: A0A8J9V9S5_9NEOP ((lesser marbled fritillary) hypothetical protein (Fragment) n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9V9S5_9NEOP)

HSP 1 Score: 140 bits (354), Expect = 1.890e-36
Identity = 76/117 (64.96%), Postives = 88/117 (75.21%), Query Frame = 1 
Query:    1 HQVSEGGENMSLGQRQLVCLARAVLRRNKILVMDEATANVDMETDALIQEAIREQFAGCTVLTIAHRLNTIMDMDRILVMRNGKVCHDDHKYLFSIYEVSNGGPSSNHLAL-TGQSM 348
            + ++EGG N S+GQRQLVCLARA+LR NKILVMDEATANVD +TDALIQ+ IR QFA CTVLTIAHRLNTIMD DRILVM  G+V   DH +L     +SN     N +   TG+SM
Sbjct: 1212 YMITEGGTNFSVGQRQLVCLARAILRSNKILVMDEATANVDPQTDALIQQTIRHQFADCTVLTIAHRLNTIMDSDRILVMDGGRVAEFDHPHLL----LSNPNSLLNFMVKETGESM 1324
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23925.6471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L328_9PHAE3.840e-3986.90ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A0K8TLH7_TABBR1.350e-3770.33Putative multidrug resistance-associated protein/m... [more]
UPI0006268FD24.010e-3766.38probable multidrug resistance-associated protein l... [more]
UPI001E68A92B7.640e-3779.12uncharacterized protein LOC123864713 n=1 Tax=Manio... [more]
A0A814ITU6_9BILA9.120e-3760.00Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
UPI0015685D5D1.020e-3679.12multidrug resistance-associated protein 4-like n=1... [more]
A0A1B6LUH8_9HEMI1.120e-3669.23ABC transporter domain-containing protein (Fragmen... [more]
UPI000763732D1.340e-3670.00probable multidrug resistance-associated protein l... [more]
A0A6G0Y5C3_APHCR1.420e-3670.00ABC transporter domain-containing protein (Fragmen... [more]
A0A8J9V9S5_9NEOP1.890e-3664.96(lesser marbled fritillary) hypothetical protein (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23925contigH-paniculata_contig23925:893..1240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score125.2
Seed ortholog evalue1.9e-26
Seed eggNOG ortholog34740.HMEL003355-PA
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0006810,GO:0008150,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0042623,GO:0042626,GO:0043492,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.ABC transporter
EggNOG OGs38CH6@33154,3BDC6@33208,3CXM9@33213,3SJJA@50557,41XS5@6656,448FA@7088,COG1132@1,KOG0054@2759
COG Functional cat.Q
Best tax levelLepidoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size348
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929683.762947-UTR-H-paniculata_contig23925:892..9191622929683.762947-UTR-H-paniculata_contig23925:892..919Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23925 893..919 +
1691480966.2190113-UTR-H-paniculata_contig23925:892..9191691480966.2190113-UTR-H-paniculata_contig23925:892..919Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23925 893..919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929683.776212-CDS-H-paniculata_contig23925:919..12401622929683.776212-CDS-H-paniculata_contig23925:919..1240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23925 920..1240 +
1691480966.228437-CDS-H-paniculata_contig23925:919..12401691480966.228437-CDS-H-paniculata_contig23925:919..1240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23925 920..1240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23925.6471.1prot_H-paniculata_contig23925.6471.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23925 920..1240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23925.6471.1

>prot_H-paniculata_contig23925.6471.1 ID=prot_H-paniculata_contig23925.6471.1|Name=mRNA_H-paniculata_contig23925.6471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MSLGQRQLVCLARAVLRRNKILVMDEATANVDMETDALIQEAIREQFAGC
TVLTIAHRLNTIMDMDRILVMRNGKVCHDDHKYLFSIYEVSNGGPSSNHL
ALTGQSM
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mRNA from alignment at H-paniculata_contig23925:893..1240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23925.6471.1 ID=mRNA_H-paniculata_contig23925.6471.1|Name=mRNA_H-paniculata_contig23925.6471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig23925:893..1240+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCAGGTGTCGGAGGGCGGGGAAAACATGTCCCTGGGACAGCGACAATT
GGTTTGCCTTGCGCGTGCCGTGCTCCGCCGCAACAAGATTTTGGTCATGG
ACGAAGCGACGGCTAATGTAGATATGGAAACCGATGCGCTCATCCAAGAG
GCAATTCGAGAGCAGTTCGCTGGGTGCACTGTGCTGACAATCGCTCACCG
GCTTAACACTATCATGGACATGGATAGGATTCTTGTTATGCGGAACGGCA
AGGTGTGTCATGATGATCATAAATATTTATTTTCAATTTACGAAGTAAGC
AACGGGGGACCTTCTAGTAATCATTTGGCTCTTACTGGACAAAGCATG
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Coding sequence (CDS) from alignment at H-paniculata_contig23925:893..1240+

>mRNA_H-paniculata_contig23925.6471.1 ID=mRNA_H-paniculata_contig23925.6471.1|Name=mRNA_H-paniculata_contig23925.6471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig23925:893..1240+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCCTGGGACAGCGACAATTGGTTTGCCTTGCGCGTGCCGTGCTCCG
CCGCAACAAGATTTTGGTCATGGACGAAGCGACGGCTAATGTAGATATGG
AAACCGATGCGCTCATCCAAGAGGCAATTCGAGAGCAGTTCGCTGGGTGC
ACTGTGCTGACAATCGCTCACCGGCTTAACACTATCATGGACATGGATAG
GATTCTTGTTATGCGGAACGGCAAGGTGTGTCATGATGATCATAAATATT
TATTTTCAATTTACGAAGTAAGCAACGGGGGACCTTCTAGTAATCATTTG
GCTCTTACTGGACAAAGCATGATGTCCCTGGGACAGCGACAATTGGTTTG
CCTTGCGCGTGCCGTGCTCCGCCGCAACAAGATTTTGGTCATGGACGAAG
CGACGGCTAATGTAGATATGGAAACCGATGCGCTCATCCAAGAGGCAATT
CGAGAGCAGTTCGCTGGGTGCACTGTGCTGACAATCGCTCACCGGCTTAA
CACTATCATGGACATGGATAGGATTCTTGTTATGCGGAACGGCAAGGTGT
GTCATGATGATCATAAATATTTATTTTCAATTTACGAAGTAAGCAACGGG
GGACCTTCTAGTAATCATTTGGCTCTTACTGGACAAAGCATG
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