mRNA_H-paniculata_contig23848.6446.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23848.6446.1
Unique NamemRNA_H-paniculata_contig23848.6446.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23848.6446.1 vs. uniprot
Match: A0A6H5K5M3_9PHAE (S1 motif domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M3_9PHAE)

HSP 1 Score: 417 bits (1072), Expect = 2.280e-145
Identity = 214/222 (96.40%), Postives = 220/222 (99.10%), Query Frame = 1 
Query:    1 QGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTKVSWPLYRKYGHAFDAFKLTLQDEEDVFVGLDMDEETKQAMITHIKRRLAPQPSKVRADIEVTCYTYEGIDAVKAALIAGKEVGDERTPIQIKLIAPPRYVMDTMTLDKDLGKSVLEKAIEIVTEKIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPEDV 666
            +GYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTKVSWPLY+KYGHAFDAFKLTLQDEEDVFVGLD+DEETKQAMITHIKRRLAPQPSKVRADIEVTCYTYEGIDAVKAALIAGK VGDERTPIQIKLIAPPRYVMDTMTLDKDLGKSVLEKAIE+VTEKI+ +GGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPEDV
Sbjct:  110 KGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTKVSWPLYKKYGHAFDAFKLTLQDEEDVFVGLDIDEETKQAMITHIKRRLAPQPSKVRADIEVTCYTYEGIDAVKAALIAGKAVGDERTPIQIKLIAPPRYVMDTMTLDKDLGKSVLEKAIEVVTEKIIESGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPEDV 331
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BLAST of mRNA_H-paniculata_contig23848.6446.1 vs. uniprot
Match: A0A835YGW1_9STRA (Eukaryotic translation initiation factor 2 alpha subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGW1_9STRA)

HSP 1 Score: 323 bits (829), Expect = 1.450e-108
Identity = 161/226 (71.24%), Postives = 194/226 (85.84%), Query Frame = 1 
Query:    1 QGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTKVSWPLYRKYGHAFDAFKLTL----QDEEDVFVGLDMDEETKQAMITHIKRRLAPQPSKVRADIEVTCYTYEGIDAVKAALIAGKEVGDERTPIQIKLIAPPRYVMDTMTLDKDLGKSVLEKAIEIVTEKIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPEDV 666
            +GYIDLSKRRVSPED+AKCEDRYNKAKAVHS+LRHVA+LRG  +EDL T+V WPL R+YG A DAFKL L    ++E DVF GLD+D+ T+ ++IT+I+RRLAPQP K+R DIE+TCYTYEG+DA++ +L AG +VG+E   I+IKLIAPPRY +DTMTLDKD GK+ LEKAIE++T +I   GG+LEVK+APKAVSQREESEL AM+ERLALENEEIDGDAPEDV
Sbjct:   96 KGYIDLSKRRVSPEDIAKCEDRYNKAKAVHSILRHVAELRGASVEDLYTRVGWPLQRRYGSAHDAFKLCLAGGEEEENDVFAGLDVDDNTRASLITYIRRRLAPQPIKIRGDIEITCYTYEGVDAIRESLQAGIDVGNEDMVIKIKLIAPPRYTIDTMTLDKDAGKAALEKAIEVITARIAEKGGRLEVKLAPKAVSQREESELAAMMERLALENEEIDGDAPEDV 321
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BLAST of mRNA_H-paniculata_contig23848.6446.1 vs. uniprot
Match: A0A6U2GSC0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2GSC0_9STRA)

HSP 1 Score: 288 bits (737), Expect = 2.370e-94
Identity = 140/227 (61.67%), Postives = 184/227 (81.06%), Query Frame = 1 
Query:    1 QGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTKVSWPLYRKYGHAFDAFKLTLQDE------EDVFVGLDMDEETKQAMITHIKRRLAPQPSKVRADIEVTCYTYEGIDAVKAALIAGKEVGDERTPIQIKLIAPPRYVMDTMTLDKDLGKSVLEKAIEIVTEKIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPED 663
            +GYIDLSKRRVSPED+  CEDR+NKAKAVH VLRH+A+ R L LEDL  ++ WPLY+KYGHA+DAFKL L DE      ED F  + + ++ K  +  +I+RRLAPQP K+R+DIEV+C+TYEGIDA++ AL AG + G E TPI++KLIAPP YV+ TMTL+KD G ++L ++I+++ E+I A GGK++VKMAPKAVS +EE+ELQAM++RLALENEE+DGDAP++
Sbjct:  112 KGYIDLSKRRVSPEDITACEDRFNKAKAVHGVLRHLAERRKLYLEDLYERIGWPLYKKYGHAYDAFKLALADEAAPGTVEDPFADVAVPDDLKDELKAYIRRRLAPQPIKIRSDIEVSCFTYEGIDAIREALFAGIDCGTENTPIKVKLIAPPIYVLSTMTLEKDAGIALLNRSIDVIRERITAKGGKMDVKMAPKAVSLKEETELQAMMDRLALENEEVDGDAPDE 338
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BLAST of mRNA_H-paniculata_contig23848.6446.1 vs. uniprot
Match: A0A482S3R4_9ARCH (S1 RNA-binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3R4_9ARCH)

HSP 1 Score: 285 bits (729), Expect = 4.360e-94
Identity = 146/226 (64.60%), Postives = 179/226 (79.20%), Query Frame = 1 
Query:    1 QGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTKVSWPLYRKYGHAFDAFKLTLQDEE----DVFVGLDMDEETKQAMITHIKRRLAPQPSKVRADIEVTCYTYEGIDAVKAALIAGKEVGDERTPIQIKLIAPPRYVMDTMTLDKDLGKSVLEKAIEIVTEKIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPEDV 666
            +GYIDLSKRRV PEDV KCE+RYNKAKAVHSVLR+VA+++ + LE L  ++ WPLYRKYGHA+DAFK+ L ++     D+F  L+ D E K A++ +IKRRLAPQP KVRADIEVTC+TYEGIDA+KAAL AG++       ++IKLIAPP YVM  MTLDK++G  V+  AIE +  +I A GG L+VKMAPKAV+ REESELQAML+RLALE EE+DGDAPED 
Sbjct:   47 KGYIDLSKRRVDPEDVVKCEERYNKAKAVHSVLRYVAEVKKIKLETLYQQIGWPLYRKYGHAYDAFKMALSNDYQHGGDIFQDLEADPEVKSAVLAYIKRRLAPQPVKVRADIEVTCFTYEGIDAIKAALAAGEQKSTADNVVRIKLIAPPMYVMTMMTLDKEVGVEVMNLAIEAIGAEIRARGGSLDVKMAPKAVTLREESELQAMLDRLALEQEEVDGDAPEDA 272
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BLAST of mRNA_H-paniculata_contig23848.6446.1 vs. uniprot
Match: A0A448YZU6_9STRA (S1 motif domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZU6_9STRA)

HSP 1 Score: 286 bits (732), Expect = 1.120e-93
Identity = 141/224 (62.95%), Postives = 181/224 (80.80%), Query Frame = 1 
Query:    1 QGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTKVSWPLYRKYGHAFDAFKLTLQDEEDV---FVGLDMDEETKQAMITHIKRRLAPQPSKVRADIEVTCYTYEGIDAVKAALIAGKEVGDERTPIQIKLIAPPRYVMDTMTLDKDLGKSVLEKAIEIVTEKIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPED 663
            +GYIDLSKRRVSPEDV  CE+R+NKAK VH VLRH+A+ R   LEDL  K+ WPLY+KYGHA+DAFKL + +E+D    F  LD+ ++ K  + ++I RRLAPQP K+R+DIEV+C+TYEGIDA++ AL AG  +G E+ PI+IKLIAPP YV+ T TL+K++G  +L +AIE++ EKI A GGK++VKMAPKAVS +EESELQ M++RLALENEE+DGDAPED
Sbjct:  109 KGYIDLSKRRVSPEDVQACEERFNKAKTVHGVLRHLAERRKYFLEDLYEKIGWPLYKKYGHAYDAFKLAISEEKDAGDPFAELDVPQDLKDELKSYILRRLAPQPIKIRSDIEVSCFTYEGIDAIREALFAGMTLGTEQNPIKIKLIAPPIYVLSTTTLEKEVGIGLLNQAIEVIKEKITAKGGKIDVKMAPKAVSVKEESELQEMMDRLALENEEVDGDAPED 332
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BLAST of mRNA_H-paniculata_contig23848.6446.1 vs. uniprot
Match: A0A7S2XWK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWK8_9STRA)

HSP 1 Score: 283 bits (723), Expect = 2.510e-92
Identity = 143/217 (65.90%), Postives = 178/217 (82.03%), Query Frame = 1 
Query:    1 QGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTKVSWPLYRKYGHAFDAFKLTLQDEEDVFVGLDMDEETKQAMITHIKRRLAPQPSKVRADIEVTCYTYEGIDAVKAALIAGKEVGDERTPIQIKLIAPPRYVMDTMTLDKDLGKSVLEKAIEIVTEKIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGD 651
            +GYIDLSKRRVSPEDV KCEDRYNKAKAVHSVLRHVA+ + LVLEDL  +V WPLY  Y H +DAFK+ L  ++DVF GLD+ +E K  ++T+I+R+LAPQP K+RADIEVTC+TYEGI+AV++AL AG+ +G  + PI+I+LIAPP YVM  MTL+KD G  +L ++I  V E + + GG +EVKMAPKAVSQREESELQAM+ERLA+EN E+DGD
Sbjct:  114 KGYIDLSKRRVSPEDVVKCEDRYNKAKAVHSVLRHVAEKKALVLEDLYRRVGWPLYTSYKHCYDAFKVALV-QDDVFNGLDVPDEIKTELLTYIRRKLAPQPIKIRADIEVTCFTYEGIEAVRSALQAGQALGSAQEPIKIRLIAPPMYVMTCMTLEKDSGIELLNQSINAVREALESKGGTMEVKMAPKAVSQREESELQAMMERLAVENAELDGD 329
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BLAST of mRNA_H-paniculata_contig23848.6446.1 vs. uniprot
Match: A0A1E7FR39_9STRA (Eukaryotic translation initiation factor 2 subunit alpha n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR39_9STRA)

HSP 1 Score: 282 bits (721), Expect = 6.490e-92
Identity = 138/224 (61.61%), Postives = 180/224 (80.36%), Query Frame = 1 
Query:    1 QGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTKVSWPLYRKYGHAFDAFKLTLQDEE---DVFVGLDMDEETKQAMITHIKRRLAPQPSKVRADIEVTCYTYEGIDAVKAALIAGKEVGDERTPIQIKLIAPPRYVMDTMTLDKDLGKSVLEKAIEIVTEKIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPED 663
            +GYIDLSKRRVSPEDV  CE+RYNKAKAVH V+RH+A  R   LED+  K+ WPLY+KYGHAFDAFKL++ +E+   D F  LD+ +  K  + T+I RRLAPQP K+R+DIEV+C+TYEGIDA++AAL AG ++G E+ P++I+LIAPP YV+ T TL+K++G  +L + IE++ EKI + GGK++VKMAPKAVS +EE+ELQ M+ER ALENEE+DGDA ED
Sbjct:  116 KGYIDLSKRRVSPEDVQACEERYNKAKAVHGVMRHLATQRKYYLEDVYEKIGWPLYKKYGHAFDAFKLSISEEKGVGDPFEDLDIPQGLKDELKTYILRRLAPQPIKIRSDIEVSCFTYEGIDAIRAALFAGMDLGSEQNPVKIRLIAPPLYVLSTTTLEKEVGVGLLNQVIEVIKEKITSKGGKIDVKMAPKAVSVKEETELQEMMERFALENEEVDGDAQED 339
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BLAST of mRNA_H-paniculata_contig23848.6446.1 vs. uniprot
Match: B8C817_THAPS (Eukaryotic translation initiation factor 2 alpha subunit n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8C817_THAPS)

HSP 1 Score: 281 bits (720), Expect = 8.640e-92
Identity = 139/230 (60.43%), Postives = 182/230 (79.13%), Query Frame = 1 
Query:    1 QGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTKVSWPLYRKYGHAFDAFKLTLQDE---------EDVFVGLDMDEETKQAMITHIKRRLAPQPSKVRADIEVTCYTYEGIDAVKAALIAGKEVGDERTPIQIKLIAPPRYVMDTMTLDKDLGKSVLEKAIEIVTEKIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPED 663
            +GYIDLSKRRVSPEDVA CED++NKAKAVH VLRH+AD R   LEDL  +++WPLYRKYGHA+DAFK+ L DE          D F  LD+  +  + +  +I+RRLAPQP K+RAD+EV+C+TY+GIDA++ AL AG  VG E +PI+I+LIAPP YV+ TMTL+K+ G ++L+K+I+++ EKI A GGK++VKMAPKAVS +EE+ELQAM+ERL LEN E++GD PE+
Sbjct:  108 KGYIDLSKRRVSPEDVAACEDKFNKAKAVHGVLRHLADRRKFYLEDLCERIAWPLYRKYGHAYDAFKIALADEAASGGEAAENDPFTSLDVPPDVIEELKLYIRRRLAPQPIKIRADVEVSCFTYDGIDAIRDALFAGIAVGTENSPIKIRLIAPPIYVLSTMTLEKEAGIALLQKSIDVILEKISAKGGKMDVKMAPKAVSLKEETELQAMMERLELENREVEGDEPEE 337
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BLAST of mRNA_H-paniculata_contig23848.6446.1 vs. uniprot
Match: A0A7S1DAC6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAC6_CYCTE)

HSP 1 Score: 278 bits (711), Expect = 9.920e-92
Identity = 137/224 (61.16%), Postives = 179/224 (79.91%), Query Frame = 1 
Query:    1 QGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTKVSWPLYRKYGHAFDAFKLTLQDEE---DVFVGLDMDEETKQAMITHIKRRLAPQPSKVRADIEVTCYTYEGIDAVKAALIAGKEVGDERTPIQIKLIAPPRYVMDTMTLDKDLGKSVLEKAIEIVTEKIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPED 663
            +GYIDLSKRRVSPEDVA CEDR+NKAKAVH VLRH+A+ R L LEDL  ++ WPLYRKYGHA+DAFKL + D+    D F  +D+ E+    +  +I+RRLAPQP K+R+DIEV+C+TYEGIDA++ AL AG     +   I+IKLIAPP YV+ TMTL+K++G ++L+ AI+++ +KI   GGKL+VKMAPKAVS +EE+ELQAM++RLA+ENEE+DGD PE+
Sbjct:   22 KGYIDLSKRRVSPEDVAACEDRFNKAKAVHGVLRHLAERRKLYLEDLYERIGWPLYRKYGHAYDAFKLAIADDHGAVDPFADIDVPEDLLDELKAYIRRRLAPQPIKIRSDIEVSCFTYEGIDAIREALFAGMAKSTDSMQIKIKLIAPPIYVLSTMTLEKEVGIALLQDAIDVIEQKITQKGGKLDVKMAPKAVSLKEETELQAMMDRLAIENEEVDGDEPEE 245
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BLAST of mRNA_H-paniculata_contig23848.6446.1 vs. uniprot
Match: B7FV44_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FV44_PHATC)

HSP 1 Score: 276 bits (707), Expect = 4.540e-90
Identity = 141/224 (62.95%), Postives = 176/224 (78.57%), Query Frame = 1 
Query:    1 QGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTKVSWPLYRKYGHAFDAFKLTLQDEEDV---FVGLDMDEETKQAMITHIKRRLAPQPSKVRADIEVTCYTYEGIDAVKAALIAGKEVGDERTPIQIKLIAPPRYVMDTMTLDKDLGKSVLEKAIEIVTEKIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPED 663
            +GYIDLSKRRVSPEDVA CE+R+NKAKAVH VLRH+AD R   LEDL  K+ WPL RKYGHAFDAFKL + DE+ V   F  LD+ ++ K  + T+I RRLAPQP K+R+DIEV+C++YEGIDA++ AL AG   G E + I+IKLIAPP YV+ T TLDKD G ++L  AI+ + + I   GGK++VKM PKAVS +EE+ELQAM++RLALENEE+DGDAPE+
Sbjct:   96 KGYIDLSKRRVSPEDVAACEERFNKAKAVHGVLRHIADRRKYYLEDLYEKIGWPLDRKYGHAFDAFKLAISDEKGVVNPFDELDIPQDLKDELTTYILRRLAPQPIKIRSDIEVSCFSYEGIDAIREALFAGMAKGTENSVIKIKLIAPPIYVLSTTTLDKDAGIALLHSAIDAIRDVIALKGGKMDVKMPPKAVSIKEENELQAMMDRLALENEEVDGDAPEE 319
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23848.6446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5M3_9PHAE2.280e-14596.40S1 motif domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YGW1_9STRA1.450e-10871.24Eukaryotic translation initiation factor 2 alpha s... [more]
A0A6U2GSC0_9STRA2.370e-9461.67Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A482S3R4_9ARCH4.360e-9464.60S1 RNA-binding domain-containing protein n=1 Tax=a... [more]
A0A448YZU6_9STRA1.120e-9362.95S1 motif domain-containing protein n=1 Tax=Pseudo-... [more]
A0A7S2XWK8_9STRA2.510e-9265.90Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1E7FR39_9STRA6.490e-9261.61Eukaryotic translation initiation factor 2 subunit... [more]
B8C817_THAPS8.640e-9260.43Eukaryotic translation initiation factor 2 alpha s... [more]
A0A7S1DAC6_CYCTE9.920e-9261.16Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B7FV44_PHATC4.540e-9062.95Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23848contigH-paniculata_contig23848:308..2555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score287.0
Seed ortholog evalue7.8e-75
Seed eggNOG ortholog35128.Thaps105
Preferred nameEIF2S1
KEGG koko:K03237
KEGG Pathwayko03013,ko04138,ko04140,ko04141,ko04210,ko04932,ko05160,ko05162,ko05164,ko05168,map03013,map04138,map04140,map04141,map04210,map04932,map05160,map05162,map05164,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000166,GO:0000278,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005850,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006464,GO:0006468,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006950,GO:0006974,GO:0006979,GO:0006984,GO:0006986,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0007568,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009267,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010042,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010608,GO:0010629,GO:0010941,GO:0010942,GO:0010948,GO:0016043,GO:0016310,GO:0017076,GO:0017148,GO:0019001,GO:0019222,GO:0019538,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030968,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031571,GO:0031667,GO:0031668,GO:0031669,GO:0032055,GO:0032057,GO:0032091,GO:0032268,GO:0032269,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033290,GO:0033554,GO:0034063,GO:0034198,GO:0034248,GO:0034249,GO:0034599,GO:0034605,GO:0034620,GO:0034622,GO:0034641,GO:0034644,GO:0034645,GO:0034976,GO:0035639,GO:0035770,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036464,GO:0036499,GO:0042221,GO:0042594,GO:0042981,GO:0042995,GO:0043021,GO:0043022,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043393,GO:0043412,GO:0043555,GO:0043558,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044207,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0044877,GO:0045786,GO:0045930,GO:0045947,GO:0046777,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051100,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051716,GO:0051726,GO:0055085,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070887,GO:0070925,GO:0070993,GO:0071214,GO:0071241,GO:0071248,GO:0071287,GO:0071310,GO:0071478,GO:0071482,GO:0071496,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0097386,GO:0097449,GO:0097450,GO:0097451,GO:0104004,GO:0120025,GO:1901214,GO:1901216,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902806,GO:1902807,GO:1903047,GO:1904035,GO:1904037,GO:1904424,GO:1905097,GO:1905098,GO:1990737,GO:1990904,GO:1990928,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000674,GO:2000676
EggNOG free text desc.Eukaryotic translation initiation factor 2 alpha subunit
EggNOG OGs2XB8H@2836,COG1093@1,KOG2916@2759
Ec32 ortholog descriptioneukaryotic initiation factor 2 alpha subunit
Ec32 orthologEc-12_002490.1
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Exons3
Model size669
Cds size669
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23848.6446.1prot_H-paniculata_contig23848.6446.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23848 308..2555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929680.4048913-CDS-H-paniculata_contig23848:307..5711622929680.4048913-CDS-H-paniculata_contig23848:307..571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23848 308..571 +
1691480964.5739067-CDS-H-paniculata_contig23848:307..5711691480964.5739067-CDS-H-paniculata_contig23848:307..571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23848 308..571 +
1622929680.4190001-CDS-H-paniculata_contig23848:1603..18911622929680.4190001-CDS-H-paniculata_contig23848:1603..1891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23848 1604..1891 +
1691480964.5963473-CDS-H-paniculata_contig23848:1603..18911691480964.5963473-CDS-H-paniculata_contig23848:1603..1891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23848 1604..1891 +
1622929680.4343317-CDS-H-paniculata_contig23848:2438..25551622929680.4343317-CDS-H-paniculata_contig23848:2438..2555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23848 2439..2555 +
1691480964.6097093-CDS-H-paniculata_contig23848:2438..25551691480964.6097093-CDS-H-paniculata_contig23848:2438..2555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23848 2439..2555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23848.6446.1

>prot_H-paniculata_contig23848.6446.1 ID=prot_H-paniculata_contig23848.6446.1|Name=mRNA_H-paniculata_contig23848.6446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp
QGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTK
VSWPLYRKYGHAFDAFKLTLQDEEDVFVGLDMDEETKQAMITHIKRRLAP
QPSKVRADIEVTCYTYEGIDAVKAALIAGKEVGDERTPIQIKLIAPPRYV
MDTMTLDKDLGKSVLEKAIEIVTEKIVAAGGKLEVKMAPKAVSQREESEL
QAMLERLALENEEIDGDAPEDV*
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mRNA from alignment at H-paniculata_contig23848:308..2555+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23848.6446.1 ID=mRNA_H-paniculata_contig23848.6446.1|Name=mRNA_H-paniculata_contig23848.6446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2248bp|location=Sequence derived from alignment at H-paniculata_contig23848:308..2555+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGATACATTGATTTGTCGAAGAGAAGGGTCAGCCCCGAGGATGTGGC
CAAGTGCGAAGACCGTTACAACAAGGCCAAGGCGGTGCACAGCGTGCTAC
GACATGTAGCCGATCTCAGGGGCTTGGTGCTGGAGGACCTCAGCACCAAG
GTGTCGTGGCCGCTCTACAGGAAATACGGCCACGCCTTCGATGCTTTCAA
GCTGACGCTGCAAGATGAGGAGGACGTTTTTGTCGGCTTGGACATGGACG
AGGAGACGAAACAGGTGTGGGATTTGACGTTGTTTCCTCTATTCGCAACA
ATTTTGAACAACGCGGACAACCATACACATGGAACATAAATGCCTGGGAG
GGGATAAATTCAATCGTACTAGCACATCGCGTGGTCAACATGCGTGTACG
CTGGCAGCCATGAAGAACTTTAATGGCGAAACAATCCAGCTCGATTCTTA
CGGATTGATTCTCTTTGCAAATTCTTACAAAAGTACCAAAGGTGGACTTG
ACGCTGGATGGACTGAACCACTCTCCCGTTACGATTCAGTTTTTGATGCT
TCGACACTTTTCCTTCAGCTTACCAGTAGACACAGACAGTGCGATTTGGT
TCGAGTTGGTGGTCAGGTAATTTGACTTCCTGGTGACGGGCACCTTTCTT
GGGTCAGTTTGTTCGTGATCAGTTTCGAGCGTTTTTCTGTGCTCTTTGGA
AAAGGGTTCAGCTGTGCATTTAGTTGTATCTAGCCGTAGCCGTGTCCCAC
CACCGTCTGTCTTGCATCAATTTATGTAGCTGATAGCTTTCATCCAGATT
TTGGATTGTGTTAAATAAACCATGAAGTGGATCTATTCCAACTGAAGATT
TGTGAGTTTTTGTGCCGATATGGTGCCCATTGTTCGATCCCAACTGCTGT
AGACTTCACGTGTGGGTATCGTGCCGGTACCATCAGTGCTGATGAAGGTC
CTTGACTGTTCAAAAAAGACCAAGGGCAGAGCGATTTTTACGCAAGTGAA
CACAAAATAAATATCGAATACAAAGAGGCTCCCCCGAAATTACTAATAAG
GCATAGTTTTGCAAGTATTAAGATGAGGATTAAACTATGATGTTAGTCAC
GCAACCATGCTGGAATTTTGTTTTTCGGTTCTGGGTAGAAATCTGGCAAG
TTTGCCAGGTATTCTTGGTAAATCCACAGGACGTTCATTGAGAGTATCTG
CTTATATCATATTCTCAGACCCCTTCTGCCGTCAATGGCTTCTACATTTA
AACACGTGCGTTGAACTCTTTGTATATGGTATCCTCTCGAGAACAGGCTA
TGATCACACACATCAAGCGCCGTTTGGCGCCGCAGCCCAGCAAAGTTCGC
GCGGACATTGAGGTGACTTGTTACACGTACGAGGGGATCGATGCGGTGAA
GGCTGCGCTTATCGCTGGAAAGGAGGTCGGGGACGAGCGGACGCCTATCC
AGATCAAGTTGATTGCCCCTCCGCGGTACGTGATGGACACCATGACTCTG
GACAAAGACCTGGGAAAGTCTGTTCTTGAAAAAGCAATCGAGATCGTGAC
AGAGAAGATCGTCGCTGCGGGGGGGAAGCTGGAGGTAAGTGTTTCACGTT
TGTTTTCTGGGACATTTAGTGAGTAGTGATAGCTGCATCTATTTGCTTAC
GTCGCTTGTTCGTTGATCGATTGTTCCTGCAACAGGCGTTTCATATCCAC
GCGGTGGACTTCCGCAAGAAGAGAGAAACGTGACTGATTGCGTTGTCTTC
ATTAACCTTGATGCTGAAGTCGACGTTGTCTTTATACTGATCGCGTTCTG
AATTCAAAGCACACTTTGTCCCTCGCTGACCACGTTGTCCGCGAAACATG
TGTAAGGTACATGATGTATCGATAGCGGTAGGGTAGGATCCCGATAAACA
ATCGGGGGCCTCCGGCAGATTTCGCTGGCTTTTAACAGTGTAAATTTGAT
CCTTGCGTGTTGGTCACGTGCCTTGATGGCGAAAGATCGCAGACACAGCA
CGAATTTACAGCTATTATACTAGTTGACAATCCTCCACATCCTTCTACCA
GCAACTTTGATTTTACTGCACAATCGTATAGGATGCACACAAGCACTTGA
CACCGATTGTTGTTCCATTTGTCTGTTCCAGGTGAAAATGGCGCCGAAGG
CAGTGAGTCAAAGGGAGGAGTCTGAACTCCAAGCTATGCTGGAGCGGTTG
GCATTGGAGAATGAGGAAATAGATGGAGATGCACCAGAGGACGTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig23848:308..2555+

>mRNA_H-paniculata_contig23848.6446.1 ID=mRNA_H-paniculata_contig23848.6446.1|Name=mRNA_H-paniculata_contig23848.6446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig23848:308..2555+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGATACATTGATTTGTCGAAGAGAAGGGTCAGCCCCGAGGATGTGGC
CAAGTGCGAAGACCGTTACAACAAGGCCAAGGCGGTGCACAGCGTGCTAC
GACATGTAGCCGATCTCAGGGGCTTGGTGCTGGAGGACCTCAGCACCAAG
GTGTCGTGGCCGCTCTACAGGAAATACGGCCACGCCTTCGATGCTTTCAA
GCTGACGCTGCAAGATGAGGAGGACGTTTTTGTCGGCTTGGACATGGACG
AGGAGACGAAACAGCAGGGATACATTGATTTGTCGAAGAGAAGGGTCAGC
CCCGAGGATGTGGCCAAGTGCGAAGACCGTTACAACAAGGCCAAGGCGGT
GCACAGCGTGCTACGACATGTAGCCGATCTCAGGGGCTTGGTGCTGGAGG
ACCTCAGCACCAAGGTGTCGTGGCCGCTCTACAGGAAATACGGCCACGCC
TTCGATGCTTTCAAGCTGACGCTGCAAGATGAGGAGGACGTTTTTGTCGG
CTTGGACATGGACGAGGAGACGAAACAGGCTATGATCACACACATCAAGC
GCCGTTTGGCGCCGCAGCCCAGCAAAGTTCGCGCGGACATTGAGGTGACT
TGTTACACGTACGAGGGGATCGATGCGGTGAAGGCTGCGCTTATCGCTGG
AAAGGAGGTCGGGGACGAGCGGACGCCTATCCAGATCAAGTTGATTGCCC
CTCCGCGGTACGTGATGGACACCATGACTCTGGACAAAGACCTGGGAAAG
TCTGTTCTTGAAAAAGCAATCGAGATCGTGACAGAGAAGATCGTCGCTGC
GGGGGGGAAGCTGGAGGCTATGATCACACACATCAAGCGCCGTTTGGCGC
CGCAGCCCAGCAAAGTTCGCGCGGACATTGAGGTGACTTGTTACACGTAC
GAGGGGATCGATGCGGTGAAGGCTGCGCTTATCGCTGGAAAGGAGGTCGG
GGACGAGCGGACGCCTATCCAGATCAAGTTGATTGCCCCTCCGCGGTACG
TGATGGACACCATGACTCTGGACAAAGACCTGGGAAAGTCTGTTCTTGAA
AAAGCAATCGAGATCGTGACAGAGAAGATCGTCGCTGCGGGGGGGAAGCT
GGAGGTGAAAATGGCGCCGAAGGCAGTGAGTCAAAGGGAGGAGTCTGAAC
TCCAAGCTATGCTGGAGCGGTTGGCATTGGAGAATGAGGAAATAGATGGA
GATGCACCAGAGGACGTTTAAGTGAAAATGGCGCCGAAGGCAGTGAGTCA
AAGGGAGGAGTCTGAACTCCAAGCTATGCTGGAGCGGTTGGCATTGGAGA
ATGAGGAAATAGATGGAGATGCACCAGAGGACGTTTAA
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