mRNA_H-paniculata_contig23748.6421.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23748.6421.1
Unique NamemRNA_H-paniculata_contig23748.6421.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23748.6421.1 vs. uniprot
Match: A0A6H5L357_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L357_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.970e-19
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    4 VFYTTPLKALSNQKFSDFRRQFGEDKVGLLTGDSSFNRDAQV 129
            VFYTTPLKALSNQKF DFRRQFGEDKVGLLTGDSSFNRDAQV
Sbjct:   84 VFYTTPLKALSNQKFQDFRRQFGEDKVGLLTGDSSFNRDAQV 125
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BLAST of mRNA_H-paniculata_contig23748.6421.1 vs. uniprot
Match: D7G373_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G373_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.530e-19
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    4 VFYTTPLKALSNQKFSDFRRQFGEDKVGLLTGDSSFNRDAQV 129
            VFYTTPLKALSNQKF DFRRQFGEDKVGLLTGDSSFNRDAQV
Sbjct:  426 VFYTTPLKALSNQKFQDFRRQFGEDKVGLLTGDSSFNRDAQV 467
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BLAST of mRNA_H-paniculata_contig23748.6421.1 vs. uniprot
Match: A0A835Z819_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z819_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.860e-17
Identity = 37/43 (86.05%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 RVFYTTPLKALSNQKFSDFRRQFGEDKVGLLTGDSSFNRDAQV 129
            RVFYTTPLKALSNQKFSDFRR+FG ++VGLLTGDSS+NR+AQV
Sbjct:  167 RVFYTTPLKALSNQKFSDFRRRFGAERVGLLTGDSSYNREAQV 209
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BLAST of mRNA_H-paniculata_contig23748.6421.1 vs. uniprot
Match: A0A359BHZ1_9CYAN (DEAD/DEAH box helicase n=2 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A359BHZ1_9CYAN)

HSP 1 Score: 80.1 bits (196), Expect = 2.310e-16
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 RVFYTTPLKALSNQKFSDFRRQFGEDKVGLLTGDSSFNRDAQV 129
            R+FYTTPLKALSNQKF+DF  ++G DKVGLLTGDSSFNRDAQ+
Sbjct:   52 RIFYTTPLKALSNQKFNDFSEKYGADKVGLLTGDSSFNRDAQI 94
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BLAST of mRNA_H-paniculata_contig23748.6421.1 vs. uniprot
Match: K2EWY9_9BACT (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=K2EWY9_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 8.060e-16
Identity = 33/43 (76.74%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 RVFYTTPLKALSNQKFSDFRRQFGEDKVGLLTGDSSFNRDAQV 129
            R+FYTTPLKALSNQKF+DF++ +GE+KVGLLTGD+S NRDAQ+
Sbjct:   61 RIFYTTPLKALSNQKFNDFKKSYGENKVGLLTGDTSINRDAQI 103
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BLAST of mRNA_H-paniculata_contig23748.6421.1 vs. uniprot
Match: UPI00194EC3C3 (DEAD/DEAH box helicase n=1 Tax=Spirulina major TaxID=270636 RepID=UPI00194EC3C3)

HSP 1 Score: 78.2 bits (191), Expect = 1.100e-15
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 RVFYTTPLKALSNQKFSDFRRQFGEDKVGLLTGDSSFNRDAQV 129
            RVFYTTPLKALSNQKF DFR+QFGE+ VGLLTGD+S+NR+A V
Sbjct:   69 RVFYTTPLKALSNQKFRDFRQQFGEENVGLLTGDASYNREATV 111
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BLAST of mRNA_H-paniculata_contig23748.6421.1 vs. uniprot
Match: A0A7S4DB23_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB23_HETAK)

HSP 1 Score: 74.3 bits (181), Expect = 1.180e-15
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 RVFYTTPLKALSNQKFSDFRRQFGEDKVGLLTGDSSFNRDAQV 129
            RVFYT+PLKALSNQK+ DFRRQFG ++ GLLTGD+S NR AQV
Sbjct:   44 RVFYTSPLKALSNQKYQDFRRQFGAERAGLLTGDTSINRGAQV 86
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BLAST of mRNA_H-paniculata_contig23748.6421.1 vs. uniprot
Match: A0A2C9VWX3_MANES (Uncharacterized protein n=3 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9VWX3_MANES)

HSP 1 Score: 77.8 bits (190), Expect = 1.500e-15
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 RVFYTTPLKALSNQKFSDFRRQFGEDKVGLLTGDSSFNRDAQV 129
            R+FYTTPLKALSNQKF DFR  FGED VGLLTGDS+ N+DAQV
Sbjct:  206 RIFYTTPLKALSNQKFRDFRETFGEDNVGLLTGDSAVNKDAQV 248
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BLAST of mRNA_H-paniculata_contig23748.6421.1 vs. uniprot
Match: A0A073CD51_PLAAG (Uncharacterized protein n=1 Tax=Planktothrix agardhii NIVA-CYA 126/8 TaxID=388467 RepID=A0A073CD51_PLAAG)

HSP 1 Score: 77.8 bits (190), Expect = 1.500e-15
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 RVFYTTPLKALSNQKFSDFRRQFGEDKVGLLTGDSSFNRDAQV 129
            RVFYTTPLKALSNQKF DFR QFG DKVGLLTGD S NRDA V
Sbjct:   93 RVFYTTPLKALSNQKFRDFREQFGADKVGLLTGDISVNRDAAV 135
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BLAST of mRNA_H-paniculata_contig23748.6421.1 vs. uniprot
Match: A0A8J5G814_ZINOF (Helicase ATP-binding domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5G814_ZINOF)

HSP 1 Score: 72.4 bits (176), Expect = 1.790e-15
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 RVFYTTPLKALSNQKFSDFRRQFGEDKVGLLTGDSSFNRDAQV 129
            R+FYTTPLKALSNQKF DFRR FG++ VGLLTGDS+ NR+A +
Sbjct:   33 RLFYTTPLKALSNQKFRDFRRTFGDNYVGLLTGDSAINREAPI 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23748.6421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L357_9PHAE2.970e-1997.62Helicase ATP-binding domain-containing protein n=1... [more]
D7G373_ECTSI4.530e-1997.62DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835Z819_9STRA4.860e-1786.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A359BHZ1_9CYAN2.310e-1681.40DEAD/DEAH box helicase n=2 Tax=Cyanobacteria/Melai... [more]
K2EWY9_9BACT8.060e-1676.74Uncharacterized protein n=3 Tax=Bacteria TaxID=2 R... [more]
UPI00194EC3C31.100e-1581.40DEAD/DEAH box helicase n=1 Tax=Spirulina major Tax... [more]
A0A7S4DB23_HETAK1.180e-1576.74Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2C9VWX3_MANES1.500e-1581.40Uncharacterized protein n=3 Tax=Crotonoideae TaxID... [more]
A0A073CD51_PLAAG1.500e-1586.05Uncharacterized protein n=1 Tax=Planktothrix agard... [more]
A0A8J5G814_ZINOF1.790e-1574.42Helicase ATP-binding domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23748contigH-paniculata_contig23748:3059..3199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog2880.D7G373
KEGG koko:K12599
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000373,GO:0000375,GO:0000377,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0007275,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009892,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010494,GO:0010496,GO:0010497,GO:0010501,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048519,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
EggNOG OGsCOG4581@1,KOG0947@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929676.590136-CDS-H-paniculata_contig23748:3058..31991622929676.590136-CDS-H-paniculata_contig23748:3058..3199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23748 3059..3199 +
1691480962.789323-CDS-H-paniculata_contig23748:3058..31991691480962.789323-CDS-H-paniculata_contig23748:3058..3199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23748 3059..3199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23748.6421.1prot_H-paniculata_contig23748.6421.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23748 3059..3199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23748.6421.1

>prot_H-paniculata_contig23748.6421.1 ID=prot_H-paniculata_contig23748.6421.1|Name=mRNA_H-paniculata_contig23748.6421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
RVFYTTPLKALSNQKFSDFRRQFGEDKVGLLTGDSSFNRDAQVGSV*
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mRNA from alignment at H-paniculata_contig23748:3059..3199+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23748.6421.1 ID=mRNA_H-paniculata_contig23748.6421.1|Name=mRNA_H-paniculata_contig23748.6421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=141bp|location=Sequence derived from alignment at H-paniculata_contig23748:3059..3199+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGTTTTCTACACCACACCGCTCAAGGCGTTATCCAACCAGAAATTTTC
GGACTTCCGGCGACAGTTCGGGGAAGATAAGGTCGGGCTTCTCACTGGCG
ACAGCAGCTTCAACAGAGATGCGCAGGTTGGTTCGGTCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig23748:3059..3199+

>mRNA_H-paniculata_contig23748.6421.1 ID=mRNA_H-paniculata_contig23748.6421.1|Name=mRNA_H-paniculata_contig23748.6421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig23748:3059..3199+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGTTTTCTACACCACACCGCTCAAGGCGTTATCCAACCAGAAATTTTC
GGACTTCCGGCGACAGTTCGGGGAAGATAAGGTCGGGCTTCTCACTGGCG
ACAGCAGCTTCAACAGAGATGCGCAGGTTGGTTCGGTCTGAAGGGTTTTC
TACACCACACCGCTCAAGGCGTTATCCAACCAGAAATTTTCGGACTTCCG
GCGACAGTTCGGGGAAGATAAGGTCGGGCTTCTCACTGGCGACAGCAGCT
TCAACAGAGATGCGCAGGTTGGTTCGGTCTGA
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