mRNA_H-paniculata_contig23710.6410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23710.6410.1
Unique NamemRNA_H-paniculata_contig23710.6410.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23710.6410.1 vs. uniprot
Match: D8LQU4_ECTSI (rRNA adenine N(6)-methyltransferase (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQU4_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 8.850e-38
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 GEFRPKQSLGQNYLTDQNYVLKICNHFGDTSERGRRVVELGPGAGALTQVLHERFPDMLAVDIDQRAVEV 210
            GEFRPKQSLGQNYL+DQNYV+KICNHFGDTSE GRRV+ELGPG GALTQVLHERFPDMLAVDIDQRA+E+
Sbjct:  132 GEFRPKQSLGQNYLSDQNYVMKICNHFGDTSEGGRRVLELGPGTGALTQVLHERFPDMLAVDIDQRAIEL 201
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BLAST of mRNA_H-paniculata_contig23710.6410.1 vs. uniprot
Match: A0A835Z0Q3_9STRA (rRNA adenine N(6)-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q3_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.700e-29
Identity = 50/69 (72.46%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 GEFRPKQSLGQNYLTDQNYVLKICNHFGDTSERGRRVVELGPGAGALTQVLHERFPDMLAVDIDQRAVE 207
            GE++PKQSLGQN+L+DQNYV+KIC+ F D+S  GR VVELGPGAGALTQVLH ++PDM+AVDID+R+V+
Sbjct:   41 GEYKPKQSLGQNFLSDQNYVMKICSSFRDSSVGGRSVVELGPGAGALTQVLHAQYPDMMAVDIDERSVQ 109
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BLAST of mRNA_H-paniculata_contig23710.6410.1 vs. uniprot
Match: A0A0G4G4E0_VITBC (rRNA adenine N(6)-methyltransferase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G4E0_VITBC)

HSP 1 Score: 110 bits (275), Expect = 1.070e-27
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 GEFRPKQSLGQNYLTDQNYVLKICNHFGDTSERGRRVVELGPGAGALTQVLHERFPDMLAVDIDQRAVEV 210
            GEFRPKQSLGQNYL+DQNYV KIC+   DTSE G RV+ELGPGAGALT++LHER+P M AV++D+RA+ +
Sbjct:   48 GEFRPKQSLGQNYLSDQNYVRKICDALIDTSEGGSRVIELGPGAGALTRLLHERYPLMTAVELDERAISL 117
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BLAST of mRNA_H-paniculata_contig23710.6410.1 vs. uniprot
Match: F0Y6X2_AURAN (rRNA adenine N(6)-methyltransferase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6X2_AURAN)

HSP 1 Score: 103 bits (257), Expect = 1.320e-25
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    7 FRPKQSLGQNYLTDQNYVLKICNHFGDTSERGRRVVELGPGAGALTQVLHERFPDMLAVDIDQRAVEV 210
            FRPKQSLGQNYL+DQNY  KI +  GD SERGRRVVELGPG GALT++L  ++P+M+AV+ID RAVE+
Sbjct:    1 FRPKQSLGQNYLSDQNYATKIVDSLGDDSERGRRVVELGPGLGALTRLLLRQYPEMVAVEIDGRAVEL 68
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BLAST of mRNA_H-paniculata_contig23710.6410.1 vs. uniprot
Match: W7U2X3_9STRA (rRNA adenine N(6)-methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2X3_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.990e-25
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    4 EFRPKQSLGQNYLTDQNYVLKICNHFGDTSERGRRVVELGPGAGALTQVLHERFPDMLAVDIDQRAV 204
            EFRPKQSLGQN+L+DQNYVLKI     D S  GRRVVELGPG GALT+VLH R+PDMLAV+ID RAV
Sbjct:  146 EFRPKQSLGQNFLSDQNYVLKIVQSLVDKSPGGRRVVELGPGPGALTRVLHRRYPDMLAVEIDPRAV 212
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BLAST of mRNA_H-paniculata_contig23710.6410.1 vs. uniprot
Match: A0A4D9CR67_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR67_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.150e-25
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    4 EFRPKQSLGQNYLTDQNYVLKICNHFGDTSERGRRVVELGPGAGALTQVLHERFPDMLAVDIDQRAV 204
            EFRPKQSLGQN+L+DQNYVLKI     D S  GRRVVELGPG GALT+VLH R+PDMLAV+ID RAV
Sbjct:   97 EFRPKQSLGQNFLSDQNYVLKIVQSLVDKSPEGRRVVELGPGPGALTRVLHRRYPDMLAVEIDPRAV 163
[Close]
BLAST of mRNA_H-paniculata_contig23710.6410.1 vs. uniprot
Match: A0A7S3MDX7_9STRA (rRNA adenine N(6)-methyltransferase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDX7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.000e-25
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 GEFRPKQSLGQNYLTDQNYVLKICNHFGDTSERGRRVVELGPGAGALTQVLHERFPDMLAVDIDQRAVE 207
            G  RPKQSLGQNYL+DQNYV+KIC+ F D S++G RVVE+GPG GALT+VL  R+P M A++IDQR+V+
Sbjct:   53 GLHRPKQSLGQNYLSDQNYVVKICDAFKDDSDQGDRVVEIGPGMGALTRVLMRRYPKMTALEIDQRSVK 121
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BLAST of mRNA_H-paniculata_contig23710.6410.1 vs. uniprot
Match: A0A6V1RUH5_HETAK (rRNA adenine N(6)-methyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RUH5_HETAK)

HSP 1 Score: 101 bits (251), Expect = 5.250e-24
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    1 GEFRPKQSLGQNYLTDQNYVLKICNHFGDTSERGRRVVELGPGAGALTQVLHERFPDMLAVDIDQRAVEV 210
            GEFRPKQSLGQNYL+D NY++KI +   D S  G RVVE+GPGAGALT+ L  R+P+M AV+IDQR+VE+
Sbjct:   76 GEFRPKQSLGQNYLSDMNYIMKIVDSLADDSPDGSRVVEVGPGAGALTEQLARRYPEMTAVEIDQRSVEL 145
[Close]
BLAST of mRNA_H-paniculata_contig23710.6410.1 vs. uniprot
Match: A0A0G4HZN6_9ALVE (rRNA adenine N(6)-methyltransferase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HZN6_9ALVE)

HSP 1 Score: 99.0 bits (245), Expect = 5.460e-23
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 GEFRPKQSLGQNYLTDQNYVLKICNHFGDTSERGRRVVELGPGAGALTQVLHERFPDMLAVDIDQRAV 204
            GEF+PKQSLGQNYL DQN++ +IC  F + SE G +V+ELGPGAGALT+VL +RFP M  V++D R++
Sbjct:  107 GEFKPKQSLGQNYLADQNFIKRICRQFHNDSEGGEKVIELGPGAGALTKVLFQRFPKMTVVELDPRSI 174
[Close]
BLAST of mRNA_H-paniculata_contig23710.6410.1 vs. uniprot
Match: A0A6U4EIC9_9STRA (rRNA adenine N(6)-methyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EIC9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 7.450e-23
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    7 FRPKQSLGQNYLTDQNYVLKICNHFGDTSERGRRVVELGPGAGALTQVLHERFPDMLAVDIDQRAVE 207
            FRPKQSLGQNYL+DQNYV KIC    D S RG RVVELGPG GAL++ L +++P+M AV+ID RAVE
Sbjct:   59 FRPKQSLGQNYLSDQNYVRKICGALTDDSPRGSRVVELGPGTGALSRTLVQKYPEMTAVEIDGRAVE 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23710.6410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQU4_ECTSI8.850e-3890.00rRNA adenine N(6)-methyltransferase (Fragment) n=2... [more]
A0A835Z0Q3_9STRA5.700e-2972.46rRNA adenine N(6)-methyltransferase n=1 Tax=Tribon... [more]
A0A0G4G4E0_VITBC1.070e-2771.43rRNA adenine N(6)-methyltransferase n=2 Tax=Vitrel... [more]
F0Y6X2_AURAN1.320e-2570.59rRNA adenine N(6)-methyltransferase (Fragment) n=1... [more]
W7U2X3_9STRA1.990e-2576.12rRNA adenine N(6)-methyltransferase n=1 Tax=Nannoc... [more]
A0A4D9CR67_9STRA2.150e-2576.12Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3MDX7_9STRA6.000e-2566.67rRNA adenine N(6)-methyltransferase (Fragment) n=1... [more]
A0A6V1RUH5_HETAK5.250e-2465.71rRNA adenine N(6)-methyltransferase n=1 Tax=Hetero... [more]
A0A0G4HZN6_9ALVE5.460e-2361.76rRNA adenine N(6)-methyltransferase n=1 Tax=Chrome... [more]
A0A6U4EIC9_9STRA7.450e-2368.66rRNA adenine N(6)-methyltransferase n=1 Tax=Phaeom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23710contigH-paniculata_contig23710:3459..3668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog2880.D8LQU4
Preferred nameTFB2M
KEGG rclassRC00003,RC03257
KEGG koko:K14191,ko:K17653
KEGG ReactionR10716
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000179,GO:0000959,GO:0001510,GO:0003674,GO:0003712,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006364,GO:0006390,GO:0006391,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009058,GO:0009059,GO:0009295,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022613,GO:0031167,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0032259,GO:0032774,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042254,GO:0042645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0140053,GO:0140098,GO:0140102,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.rRNA (adenine-N6,N6-)-dimethyltransferase activity
EggNOG OGsCOG0030@1,KOG0820@2759
Ec32 ortholog descriptionchloroplast dimethyladenosine synthase
Ec32 orthologEc-24_002310.1
EC2.1.1.183
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03029
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.3568795-CDS-H-paniculata_contig23710:3458..36681622929675.3568795-CDS-H-paniculata_contig23710:3458..3668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23710 3459..3668 +
1691480962.179801-CDS-H-paniculata_contig23710:3458..36681691480962.179801-CDS-H-paniculata_contig23710:3458..3668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23710 3459..3668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23710.6410.1prot_H-paniculata_contig23710.6410.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23710 3459..3668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23710.6410.1

>prot_H-paniculata_contig23710.6410.1 ID=prot_H-paniculata_contig23710.6410.1|Name=mRNA_H-paniculata_contig23710.6410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
GEFRPKQSLGQNYLTDQNYVLKICNHFGDTSERGRRVVELGPGAGALTQV
LHERFPDMLAVDIDQRAVEV
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mRNA from alignment at H-paniculata_contig23710:3459..3668+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23710.6410.1 ID=mRNA_H-paniculata_contig23710.6410.1|Name=mRNA_H-paniculata_contig23710.6410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig23710:3459..3668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGAGTTTCGGCCGAAGCAAAGTCTTGGACAGAACTACCTCACAGATCA
AAACTACGTCTTGAAGATCTGCAACCACTTCGGAGACACGTCAGAGAGAG
GTCGTCGAGTAGTGGAGCTGGGGCCTGGGGCAGGAGCCCTGACGCAAGTG
TTGCACGAGCGGTTTCCCGATATGCTCGCAGTGGACATTGATCAAAGAGC
AGTGGAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig23710:3459..3668+

>mRNA_H-paniculata_contig23710.6410.1 ID=mRNA_H-paniculata_contig23710.6410.1|Name=mRNA_H-paniculata_contig23710.6410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig23710:3459..3668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGAGTTTCGGCCGAAGCAAAGTCTTGGACAGAACTACCTCACAGATCA
AAACTACGTCTTGAAGATCTGCAACCACTTCGGAGACACGTCAGAGAGAG
GTCGTCGAGTAGTGGAGCTGGGGCCTGGGGCAGGAGCCCTGACGCAAGTG
TTGCACGAGCGGTTTCCCGATATGCTCGCAGTGGACATTGATCAAAGAGC
AGTGGAGGTGGGAGAGTTTCGGCCGAAGCAAAGTCTTGGACAGAACTACC
TCACAGATCAAAACTACGTCTTGAAGATCTGCAACCACTTCGGAGACACG
TCAGAGAGAGGTCGTCGAGTAGTGGAGCTGGGGCCTGGGGCAGGAGCCCT
GACGCAAGTGTTGCACGAGCGGTTTCCCGATATGCTCGCAGTGGACATTG
ATCAAAGAGCAGTGGAGGTG
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