mRNA_H-paniculata_contig2365.6392.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2365.6392.1
Unique NamemRNA_H-paniculata_contig2365.6392.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2365.6392.1 vs. uniprot
Match: D8LRJ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRJ9_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 5.210e-12
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 3 
Query:  270 LDSARRSYAERKARKVSSMLQETFVAKFEVDHLPSQRQVYEKRGSLLYLVPREEAREKLEARERRLGEQLTALQDAA 500
            L  ARR YA  K+  +S+ LQE  VAKFEV+H  S RQ+Y KRG+LLYL PR E + KLEA E+ +GE+L  +Q AA
Sbjct:    4 LQEARREYAVSKSAALSTQLQEISVAKFEVEH--SHRQLYAKRGNLLYLTPRPEVKAKLEASEKGVGERLAKMQKAA 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2365.6392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRJ9_ECTSI5.210e-1255.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2365contigH-paniculata_contig2365:15500..21461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPrefoldin
Ec32 orthologEc-12_000070.1
Exons2
Model size1319
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2365.6392.1prot_H-paniculata_contig2365.6392.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2365 15739..20657 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929673.139183-UTR-H-paniculata_contig2365:15499..157381622929673.139183-UTR-H-paniculata_contig2365:15499..15738Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2365 15500..15738 +
1691480961.1939528-UTR-H-paniculata_contig2365:15499..157381691480961.1939528-UTR-H-paniculata_contig2365:15499..15738Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2365 15500..15738 +
1622929673.205541-UTR-H-paniculata_contig2365:20657..214611622929673.205541-UTR-H-paniculata_contig2365:20657..21461Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2365 20658..21461 +
1691480961.2367885-UTR-H-paniculata_contig2365:20657..214611691480961.2367885-UTR-H-paniculata_contig2365:20657..21461Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2365 20658..21461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929673.1541753-CDS-H-paniculata_contig2365:15738..158821622929673.1541753-CDS-H-paniculata_contig2365:15738..15882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2365 15739..15882 +
1691480961.20401-CDS-H-paniculata_contig2365:15738..158821691480961.20401-CDS-H-paniculata_contig2365:15738..15882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2365 15739..15882 +
1622929673.1752815-CDS-H-paniculata_contig2365:20525..206571622929673.1752815-CDS-H-paniculata_contig2365:20525..20657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2365 20526..20657 +
1691480961.2172854-CDS-H-paniculata_contig2365:20525..206571691480961.2172854-CDS-H-paniculata_contig2365:20525..20657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2365 20526..20657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2365.6392.1

>prot_H-paniculata_contig2365.6392.1 ID=prot_H-paniculata_contig2365.6392.1|Name=mRNA_H-paniculata_contig2365.6392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MNENSSSGLTLDSARRSYAERKARKVSSMLQETFVAKFEVDHLPSQRQVY
EKRGSLLYLVPREEAREKLEARERRLGEQLTALQDAAADPR*
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mRNA from alignment at H-paniculata_contig2365:15500..21461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2365.6392.1 ID=mRNA_H-paniculata_contig2365.6392.1|Name=mRNA_H-paniculata_contig2365.6392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5962bp|location=Sequence derived from alignment at H-paniculata_contig2365:15500..21461+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCAAATCCTCTCTGATTGATATACTTTGCATTGGACGATGTGAATAAA
GTCTACACCCTTTATAAGGTATATTTTTTATGTTGTCTCGATTATACCTT
GTAGAGGGTCACTCGCTGTACCTATCTGTGTCGTGCGCCTCACATCCATG
TAGAAGCAACAGCAACAGCAGCAGCAGCAGTAGCAGCAGAAACAACACAA
GCAACGAAGTGCCTGGCGCTGGTTACTGTTAGACAGATCATGAATGAAAA
TAGTAGCAGTGGGCTGACACTTGATAGCGCCAGGAGATCTTACGCGGAAA
GGAAGGCGAGGAAAGTAAGTAGCATGCTGCAAGAGACTTTCGTGGCAAAG
TTCGAGGTGGACCACCTGCCAAGTCAAAGACAGGCAAGTGTGCAAGCGAC
ACCCGATGTTTCGTAAGTCGTACTTGTCCTGATTTTTTCCATGTGTATGG
GCTAACTGACTGCTACATAGCATCGGCCCGAATATAACTCTTATTTTGGG
CGAGGCTCGAAAAACTTATTCCAGTGAATGTCGTGAGTAATATTTCTTAT
ATCACCATGTCTTGTTGGCATTCAATGTTGAATGAGTATTTCTTATTTCA
GTGTACCTTAAAAAGAGCCTCTTGCTACCCCCTACAGGCAGTACAGCCAG
TCGACACTTTAATACTGGGCATGTGCATTCATGCCATTTCCTATTATCCA
CAGCTGCCACATTCCACCTCTTGCGTAGCAATCACACATCCATCTCGGCT
TATCAGAAAGGTCACGAACATTTGAACATTCGGAAGGCGTAATACCCTTC
CCGCCCTCGTTCTCAAGGGTTCGATGTTCTTCTGCCCGCCCCTTGGTGCA
ACTTCGTATCCAAGACTTCGGGTTGGCGTTTCGACGTCCCACCGCGCAAT
AATATAAGGCAAGAACCCAAATATTCCACGCCAGCTTTCGTCCAGGGGTC
TCGATGGATGGGTTAATCCACGACGAAAAAAACAAGATACACCCTCTTAC
ACCTGTAAAGAAGAAATGGACAGGAATGAGATAACGTTGTTCCAGGAAGC
CCAACAACTAGGACCATCTCTTATTAGCGGAAATTGAAAATCAAAGTTGA
GCTCAATTTTGAAAGACTTGATTTTTTTTTTTTTCCCATCTGCATTTTTG
GATTGCACACTAAAGCATGTCTTATGGGCGGAAATTGGAAATTGGAAATT
GAGAGATTTATACAGCACACGTTGGCGTGTCCGAGTTTTTTTTTCGGTGT
CATGTCGGCAGATGTGCATCGCATGTACGTCTCTGCCGCGTGCTACTACG
CCCTGGACTTGAGGTCTTCAGACTGCAGCATCTTCTACCATGCTGACTCG
CGGTATTTGCCACGAGGAGGCACACAATGAGAGCGTTTGGCATCTTCTGC
TGCCGTGGGATCAGGAAAGTTAGATCCATCATCCATCATTCATCACCGGT
GCGGCGACGACCAAACTGCGTTTCCCAAGAGATGCCAGAACTCTTGCCAT
GGTGGCCGCGCTCTTCTCCCGCACCCCGAGTGCCGTCGTTCGCCTGTGGT
GTGAGACTTGGTCCGTGCCTCCTCGTAGAGAGTGTGTGTGTGTGTGTGTG
CTACAGCTGAAGTGCGGTAGACAATGACATTTTTCTGTAGCTGTGGCACT
TTTTCAATTTTGAACTCCCCGACCAAAATTGAGCTCCGTTCAAAATTGAG
GAGGCCATTTTTTTTTTCGTTCAATTTGGGCTCAATTCTAATTTTGAACA
GGTCCCATAAGAGATGGTCTAAGTACCATAGATATTAGTCATATTGTCAT
GTCCCGATTGCCCCGATTGACTGTGGCAAACCGCGTACTGCAGTGCCTGT
GAGTACTGTTACTCATAACAGGACGCCACACACGCAGCGGCTATCGCTAG
CTACCGAAATCTTAGGATAATATGTGAGTGACTGCCAGCTCTTGTGTGCC
ACAAATATGGTGCTGCATGCAGCAGTATTGTCTGTATATTTTGTCGTTGG
GCGCAAGTCTATGGCATCATGCTGTTTGCGCTGTGCAGCTGATTGTCATC
GCTCGAGGGACCCATGTGTGTACTGCAGTCTGGCAGCTGCACCACTTCTA
CATCAAGTATACGCTTACCCGCTTTGCTAAGTAAATTTTGGGCAGGAGCA
GCGGCCTCTGGCTACGGCTAAACCCCTCACCCAACACTTCAATATTTTTC
AGTTGTTTTGGCTTCTGTATGTAGTCGGAGATCTCCCATACTCATCCCCT
CCGGTTTGTATGGGTACATTCGTATTGGTGCTACTCCAACCCTCCCCACC
TGGCAATCGGTACCAGGGCCTCCCGCTACGTTTCGCCGGGCATAGTGGCG
GGTAGGCCGCTAGCGCCAGGCATTCTGCGGTAGTCGAGAAAACGTTCCCA
GCTGCGTACCCGCTCTCATCTTGCAGCTTCTAAGCGACCCCCCTTGTGAG
TCACTTGTTGTGAAACTCTTGCCAACCATACGTTGATAGCCTCGAGAGGC
AGCCAACGGTTGTCAGGACATCAGGAGACCGCCGCCGATGCCCGTGACAA
GGGCGAAATCGATTGCGGTCGTCACTGGGACACAAGAGCAAACTACCCAA
CAGCAACAACCACCGTCTGACAACTCGTCACTCCCCCGCCTGACGACCAC
ACAGCGCCAGGAGTCAGCGGCGGCGCCGTTGGTGCCTATGTCCGTTGCCA
AACTGGTGTGTTGGTGCTCAGGTGGGTCGGGTTACCTTCGGGTGATCGAT
CTCAACATGATGCTCGATCAGAACAGGGTAGAGCTACAGCGTTTCACCAG
CGAGTCTCATCATAGAAACGTATCAATATCGCAAGGTCAGACTCTGGTCG
TTGACAGCTAGTGCGACCGCGGCCGCTACGTCGTCTCGATATTGATCATC
CTCTCCTCTCCTGGACTAGCCGCGCGCAGAGCGATCTGCTTCAGAAATTT
CGCTACAGGGTGATGAGACTCGCTGGTGAAACGCTGTAGCTCTACCCTAT
TCTGATCGAGCATTATGTTGAGATGATTCCGTTTTGGGGCGAGGCCGGGG
ACTGGTCGTTAAAAGCTAGCGCGGCCACCACCACTCGTCGTCTCGATATT
GGTAATCCTCTCCTCGTGTTTTTGGGCGAGGCTGGGGTCTAGTTGTTGAC
AGCTAGTGCGGCTGCCGCCACCGCCTCGTCTCGACATTGGTAATCCTCTC
CTCTCCTGGCCCAGCCGCGCACATAACGATCTCCTCCAGAAATTTCGCTA
GAGCGTGATGAGACACGCTGGAGAAACGCCGTAGCTGTGCCCTGTTGTGG
TCGGGCATCATGTTAAGATCGATCACCCGAAGGTGACCCGATCCACCTGA
GCACCAGCGGCGCCGCCGCTGGCTCCTGACGCTGTGTGGTTGTCAGGGGG
AGGAGTGACGAGCTTTCAGACGGTGGTTGCTGTTGTTGGGTAGTCTGCTG
TTGTGTCCCTGCGGCGATCGCAACCGATTTCGCCTTTGTCACGGGCATCA
ACGGCAGTCTCCTGATGTCCTGACGACCGTTGGCTGTCTCTCGAGGCTAT
CAACGTACGGTTGGTTGGCAAGAGTTTCACAACAAGTGACTCACAATGGG
GGTCGCTTCGACGCCCTCTTGTTCGGTTCGATTTTCCAGAGACGATCATG
TACGTCACAATTCATTTCAAGTTACGCTCACAGATTACGTTGGAAACATG
AACGAACCAGAAGCGATTCTCATGTGTGTCCATGTTTGTTGATCGTTAAT
CGTAAAATGGAAGAACAGAAACCCCTCGCGAGTGTCACAAGGGTCGTCAG
CTCTTGGACATCGAATTTTTGATGCAACAATCTCCAATAGTATAAATCTC
GACAATACCTCTCGACCAAACTCCACCACCGACAAACCCACGGCACTTGA
TGCTCCCTGACAGCATGTACTACATCCTCGACATGGGACAGATTTGACGC
GCAAGAACAGCATGGTGCCGGCACCCTATGTCGCTCCAATAGATGGATTG
CATGTCTTGTAGCTGGTGTATGGCATATCGTTTGTGAGATGGAGAGAAAT
TCTACTCGCCCGGAAGTTCTGCTATTGATCGGAGTGCAAGCCACGACATG
GGACAATTCTTGCCTTCAAGATCTCGAACGCCGCGGCGACCTGGCTATTC
GGGTTTGACCGTGGTGTAAAATCGTTTGTACCCAGGCATAGATGGAACAG
TTTCATCGTGCATGTTCAAGGTCTTCTGTTTGTCTGATCGGCTAGCGCTT
TCGGGCGGTTCGGGCGCCGACGAGGAGAAGTCAAGCGGTGTCGTACAACT
GAGCGACCTTTTATTCTATATATTGTACGATCGGCAAGCGCTTCCGCCGC
ATACATTATGTGACTAGGACAAGAGGCACGCGCTCTCCGCTCTCGTACTA
AAGTGAAGACATGCATCTCAATCGCAACACATCTCCAATAGAAGCCTCTG
TGTGGAGAATCACTTTGCTACTGCTATAGCTGGTGATTTCGTTAGGCTCA
GAAACCACTCTCAAGATGACCCCAAAATCGGGCGTGTGCGACCCTTAAAA
TAAGGCACCATCGGTCAATTGATTTTCCCACGCTGCTACCTTGGAATCAT
TGTGTTTTCGAGAAGGTTAAAGCTGGAGGGAACTGAGAATTTTGCCTGCC
CAACACATACATGATGAAACAAGTACCAGAATTGCCAAGTTAACCTTCAA
GTGAAAGTAGGCTACTATTTGACACACTCCTTTATTTTCTGATTCTGCAG
TACGCCAGGCATGGCCGAGACACGGCTTCATACTTCGTATCACCCTGGCT
TTGTTTATTGTGTGTGGCATCAGGCAAGAAAACCCATTTAAAATTATGGC
TGATGACAAACAAACGGGTACAGAATTACTGCACGTTTGAGTTCGTTTGC
GAGTGCTGCTGTCTGCTCGGCGTTACATGTTACTACTAGATCGGCGCCAT
TTTGTTTTGTGATGATTTTCACTCTCTACCTTGTCCGGTTATTTTGTGCT
GTTTGTAATTGGTTCGAGTGAGGCAGGTGTATGAAAAGCGAGGGTCGCTA
CTCTACCTTGTGCCGAGGGAAGAAGCGCGGGAGAAGCTGGAGGCCAGAGA
GCGACGGTTAGGAGAACAGCTGACCGCCCTGCAGGATGCTGCGGCCGATC
CTCGATGAAGTTGCCGATGCGGCAGCCGTAGAGTTTGCTCTTGTTTTCGT
CCGTTCACGTGGGGGATAACTGCATTGTTGATGAGAGGGCAGGGCACTAC
ATATAGTGTTCTCTCCAATGTTGTCCTAACATATGCTGTTTTGCGTGCAT
GCTGTTGGTGTGTGTATTGATATCAAGTGTGGAGCGACAGGCGGAGGAGC
GCGTTGGCATATGCATGTGTGGGCGTGTGGGATGGGCTGTTCGCAACGGC
GACTACCAAAAGCCTCGTGGGGCGATATATGGACGACTGTATAACAAACT
AAAATAGGAATCACGTATATTTTCAGTGGGAGTATAGTGCGATTTTTATC
GTTGAGACCACCACGCCTTACATATTCCGTAGCGGCTGCGCCCGCATGTT
TGATGTGGCAAACCACTTATTTTTAGTGTGCGAATTACCATGCTTGAGCC
AAACTGGTGTCCGTTATGTGTACAGATGAGCTCTGGTAACTGATATTTAC
GTCAACTTGGGCTGTTGCGTTGACTTTGTCCACGTCCGCTTGCTACGTGG
GCGCATACTGTATACGTGCGTTAAACTCGGGAGACGGGTTGCAGTGAGTC
GTGTCGGTAGGTCCAGTGTTGAGTTGGTGGATGGATAAATATAATGGGAC
TTGTCGATAACGTATTGTGCCAATCAATGACCGTTTAATCCTTGGTTATC
ATTTGCTTTTTGTGTTGTGATATTTTACTAGAAATATCAATAGGTCTAGG
TAGATCATGATGAACATATCACTGCAGTGCTTGCCGCTACACCAACCTCG
AAGCCCATTTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2365:15500..21461+

>mRNA_H-paniculata_contig2365.6392.1 ID=mRNA_H-paniculata_contig2365.6392.1|Name=mRNA_H-paniculata_contig2365.6392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig2365:15500..21461+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATGAAAATAGTAGCAGTGGGCTGACACTTGATAGCGCCAGGAGATC
TTACGCGGAAAGGAAGGCGAGGAAAGTAAGTAGCATGCTGCAAGAGACTT
TCGTGGCAAAGTTCGAGGTGGACCACCTGCCAAGTCAAAGACAGATGAAT
GAAAATAGTAGCAGTGGGCTGACACTTGATAGCGCCAGGAGATCTTACGC
GGAAAGGAAGGCGAGGAAAGTAAGTAGCATGCTGCAAGAGACTTTCGTGG
CAAAGTTCGAGGTGGACCACCTGCCAAGTCAAAGACAGGTGTATGAAAAG
CGAGGGTCGCTACTCTACCTTGTGCCGAGGGAAGAAGCGCGGGAGAAGCT
GGAGGCCAGAGAGCGACGGTTAGGAGAACAGCTGACCGCCCTGCAGGATG
CTGCGGCCGATCCTCGATGAGTGTATGAAAAGCGAGGGTCGCTACTCTAC
CTTGTGCCGAGGGAAGAAGCGCGGGAGAAGCTGGAGGCCAGAGAGCGACG
GTTAGGAGAACAGCTGACCGCCCTGCAGGATGCTGCGGCCGATCCTCGAT
GA
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