mRNA_H-paniculata_contig23643.6388.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23643.6388.1
Unique NamemRNA_H-paniculata_contig23643.6388.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23643.6388.1 vs. uniprot
Match: A0A6H5LBI9_9PHAE (PLCXc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBI9_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.140e-36
Identity = 84/204 (41.18%), Postives = 106/204 (51.96%), Query Frame = 1 
Query:   13 QVELEEGDNGDGSPTLTVRANHDGVIVILPQEIKSRLGQEWFAVPSPPSKVASSGWQKCCPISFTLGALGGNHPNLRGGHTARSFGELTLADLNPPPEVG------------PEDCNRDRAN-------------------------------------CRPSGGDAEGDWTEEWMKMCMPAIEGLTLSQLSIPGTHDSGTAKM 477
            Q+ELE+G +G G+PT TV A  +G+ V LP E++      WFAVP  P KVA +GWQK C +SFT+G+LGG H +LRGGHT RSF  + +A L      G            P+  +  R N                                      RP+GG AEGDWT EWMK    A+  L LS++S+PGTHDSGTAKM
Sbjct:   67 QMELEDGQSGPGNPTFTVSATVNGLSVELPAEMRK---PGWFAVPPAPHKVADTGWQKGCVVSFTIGSLGGQHASLRGGHTPRSFQGVKMASLRGAAAFGGNGNREGRGALIPKRQSSARGNGXXXXXVEGFFGGIGRHLQAVTESAGGLLNDCGIGAPARPAGGKAEGDWTTEWMKTYASALANLKLSEMSLPGTHDSGTAKM 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23643.6388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBI9_9PHAE2.140e-3641.18PLCXc domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23643contigH-paniculata_contig23643:141..3321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue1.6e-34
Seed eggNOG ortholog2880.D8LR29
KEGG rclassRC00017,RC00425
KEGG koko:K01771,ko:K06038
KEGG ReactionR03332
KEGG Pathwayko00562,map00562
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.phosphoric diester hydrolase activity
EggNOG OGsKOG4306@1,KOG4306@2759
EC4.6.1.13,4.6.1.14
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size477
Cds size477
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23643.6388.1prot_H-paniculata_contig23643.6388.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23643 141..3321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.5912232-CDS-H-paniculata_contig23643:140..2811622929672.5912232-CDS-H-paniculata_contig23643:140..281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23643 141..281 -
1691480961.0407813-CDS-H-paniculata_contig23643:140..2811691480961.0407813-CDS-H-paniculata_contig23643:140..281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23643 141..281 -
1622929672.6042063-CDS-H-paniculata_contig23643:1660..17961622929672.6042063-CDS-H-paniculata_contig23643:1660..1796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23643 1661..1796 -
1691480961.0531492-CDS-H-paniculata_contig23643:1660..17961691480961.0531492-CDS-H-paniculata_contig23643:1660..1796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23643 1661..1796 -
1622929672.6161208-CDS-H-paniculata_contig23643:3121..33211622929672.6161208-CDS-H-paniculata_contig23643:3121..3321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23643 3122..3321 -
1691480961.0641162-CDS-H-paniculata_contig23643:3121..33211691480961.0641162-CDS-H-paniculata_contig23643:3121..3321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23643 3122..3321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23643.6388.1

>prot_H-paniculata_contig23643.6388.1 ID=prot_H-paniculata_contig23643.6388.1|Name=mRNA_H-paniculata_contig23643.6388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
QNTKQVELEEGDNGDGSPTLTVRANHDGVIVILPQEIKSRLGQEWFAVPS
PPSKVASSGWQKCCPISFTLGALGGNHPNLRGGHTARSFGELTLADLNPP
PEVGPEDCNRDRANCRPSGGDAEGDWTEEWMKMCMPAIEGLTLSQLSIPG
THDSGTAKM
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mRNA from alignment at H-paniculata_contig23643:141..3321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23643.6388.1 ID=mRNA_H-paniculata_contig23643.6388.1|Name=mRNA_H-paniculata_contig23643.6388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3181bp|location=Sequence derived from alignment at H-paniculata_contig23643:141..3321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAACACAAAACAGGTTGAGTTGGAGGAGGGCGACAATGGAGACGGTAG
CCCTACCTTAACAGTGAGAGCTAACCACGATGGGGTCATAGTGATCCTGC
CCCAGGAGATCAAGAGTAGGCTGGGTCAGGAGTGGTTCGCGGTACCCTCG
CCACCCAGCAAGGTGGCGAGCAGCGGTTGGCAGAAATGTTGCCCAATCAG
GTACGGTAGGTGTTCGGGGTCATCCAGAGAATACATGGGTGGGGGCGGGA
TTAGTGGGAATAATCAATGATCATCACCTCATACAGATATGTCAAATCCA
TTCATCCTGATTTGCGAAGCTTTACTGACCCAGGGGGTCGAACCGTTTCC
TGTGCTCTGATTTTGTTGTCAAAAGGTAATTTTAGTGGACGTATGTTTCG
TAGCCCACAAGCAATAAGTTGATCAACGAATCGATCAAGACATCCATTAT
GATTGGATATTCCCGTCAGCACAATGAAAAACAAAACAAAAAAAACACGC
CATTGCCTATAAATAACCAACTATCAATAAAAATTTGCCTATAATTCTTT
TTTTTTTCCATTTCACGTCATTTTCCTCAATAGTAATGAGTAAATGACCC
ACAAATCGACCCAATTTGAGAGGGAATGTGTAGTAGTCAATAATATTGTC
TTTTAGTAGAATTTCCTTTAAAAAAACACCGTCGATTTGACTTACGGTTA
CGTGTGTCTTCCACATGGCGCACCGAGGATACCTATTATAGCTTGTATCT
TCAAAACTGCGCACTATTCAAGGCGAGGAGGAGAAAGCTCTGTACCTGTC
ACTTCTCGTATCTGCGTCCACACAGTAAGAGTGATAGCGTGGACAACTGA
GATTTTTAGTCAACACGACTTGGATGTTCCCCCACTCTCTTTGCTGCTCT
CGTTAAAACACACACACGGCAAACATGATAACGAAGAAATAGAAATGGTA
TGGGTTTCTCGAAAATCAATGGTTCAAATTTCAACTGGTTTCTGACTAAG
CCGTGGATGTTTACTGATGAAGTGTGAGAAATTGAATTTCGAAGACAGCT
ACCAAGAGTTAACATGGAGGGAAAATGGAGTGTCATTATATGAGCGTTAA
AGCTACAGTAACACTATCTGTGGCAAGTGGTTGCTTGACTTATGGATGAA
AATCTTGGTGGGTGTTATTTTTTTTTCTTTCGGGGTGTCAGTCATTCATG
TCGAAACTATTTCATTTTTATGTACAGTACACATGCGGCTGATCCAGTGA
CACTCCCGTTTGAAGGCTATCGTAGCCCATGTTGTGCCTGGGTGCTGTCC
CCCTCCTTTCCCCCATGCGAAGAGCGATTGGCCGTCGGAAATCGCTCTGG
TAGGAACAAACCTTCTGTCTGCCGAGGACGCGTGGTCAATGGTTTAACAA
CTAGCGCACCCAAGACAACAGAACCTCCCCCCCCCCCCCCCCCCCATACG
TTCCCTCGAAACTGTTTACATTGCTGTCCTACATTTTGTTCCCTTGGCCG
TGTTTTTTTGCTCTTGACGTATTAGCTTTACGCTTGGTGCTCTGGGTGGC
AACCATCCAAACCTTCGCGGCGGCCACACTGCTCGCAGCTTCGGCGAGCT
GACGTTGGCGGATCTCAACCCTCCACCGGAAGTCGGACCCGAAGACTGCA
ACCGTGACAGGGTGCGATTTGTTTTTTGCCGATTTTGTTTTTGAGAGGGC
GGGGTGCGGTTGGGATCACTACATCACTCGCATGTTTACTATAGGCAAAA
CATGAAATAATCCTCATATGATACGAACAACTGACACCATAATTATTGAA
AACAAGACTCCATTTTGCTATCTGAAACTCTCACTGTTGTGGTAAATTGA
CCTTACCATAGGCAGTTGAAGTTTATGCTGCTGACTCTAATCTGCAACTG
TCTATACTTCCCAGCAAAAGTTAAATCAATCGGAGGAGTGCCCACCTCCC
GCACGCGTTGAGGTAGGTTACGCAGCTGACCTTAAATCTCTTTGTTATCT
AATAACATATATCAGGAAATAACCGAAAATACCAGAACAAATAGATCAAA
TAAGCGGGGGAACGGACGGACAAAAATGAAAGGATGCCTGTGCCAACTTA
TGCTGCTGAATGACGGTGACTGGGTCCGTAAACGAACCAACAACATGAAG
GGACGGGGAGGGGGTGGAGTCAGCAGGGGGAGGTTTACCTCATGATAGCG
GATATGTCAGTAAATAGCCAGGACAGGTAGCCGTTGAATATTTTCGGTTC
TATGCGCTGTACAATGCCGAAATGAAGCTTTCATGTATGCCGGGGTTTTG
TTGTTGCAGGGCAGGCCGCGGTTTGACAAGGGTGATGACAACTAGCAGTA
CACAATGTCCATCTATGGGGATAATTGACGTAGAGCTCTCTTCCTCTTTC
CCACTCTCTCCCTCTCTATCTGTCTTTTCTGCACACACACGCATACATAC
TTGTAACAGGCGGACGTAAAGCAACGGTATTTCAGGCACGCATAGACGAA
TGCGGTTTTCCGCTCACTATACAGACAGTATCCATCCGCCGGTATAACCC
TCTTCATTCTTCACTTGTCATGGATGAATAAAGTACACACAAGTTGACTT
TGAAGATGAAAATTTCAGCTGCACACCCACCTCAGCATGACAAGTGCTAT
ACATACATGCATACATATATTTCTATACAATTTAACAGACACGTTACTTT
TTGGCGGGGGGGGGGGAGTTTTGTTTGCACATCTCCGCTGTCCGTTTTCA
ACACTATATAGTCGACAGATGTTTTCTGATCGACTGCAAGACCTTAGACT
TGGAGACTTGTGCTTCCCTCCATCCTCTCCACCAGCCATTCCCCTATTTT
TTTTACAGTCGCAACCCCCGTCCTACCCCCCCCCCCCGTACACCAGGTGT
TGCCTCTCGCCGATTTGTCCTCCGGAGATAGCGACCGCGGCGGCTTTGGC
GGACGGCTATTTGAAGGGATCGGGCGAATCATCCAGGAGGTTACGGAAGG
CGCGGAAGACTTGCTGGGCGACTGTGGCGTGGGACCCAAGGCCAACTGCC
GTCCGTCGGGTGGGGACGCAGAGGGAGATTGGACCGAGGAGTGGATGAAA
ATGTGCATGCCGGCGATCGAGGGGCTGACGCTGTCGCAGCTGAGCATCCC
CGGGACGCACGACTCCGGGACGGCTAAGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig23643:141..3321-

>mRNA_H-paniculata_contig23643.6388.1 ID=mRNA_H-paniculata_contig23643.6388.1|Name=mRNA_H-paniculata_contig23643.6388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig23643:141..3321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAACACAAAACAGGTTGAGTTGGAGGAGGGCGACAATGGAGACGGTAG
CCCTACCTTAACAGTGAGAGCTAACCACGATGGGGTCATAGTGATCCTGC
CCCAGGAGATCAAGAGTAGGCTGGGTCAGGAGTGGTTCGCGGTACCCTCG
CCACCCAGCAAGGTGGCGAGCAGCGGTTGGCAGAAATGTTGCCCAATCAG
CAAAACACAAAACAGGTTGAGTTGGAGGAGGGCGACAATGGAGACGGTAG
CCCTACCTTAACAGTGAGAGCTAACCACGATGGGGTCATAGTGATCCTGC
CCCAGGAGATCAAGAGTAGGCTGGGTCAGGAGTGGTTCGCGGTACCCTCG
CCACCCAGCAAGGTGGCGAGCAGCGGTTGGCAGAAATGTTGCCCAATCAG
CTTTACGCTTGGTGCTCTGGGTGGCAACCATCCAAACCTTCGCGGCGGCC
ACACTGCTCGCAGCTTCGGCGAGCTGACGTTGGCGGATCTCAACCCTCCA
CCGGAAGTCGGACCCGAAGACTGCAACCGTGACAGGCTTTACGCTTGGTG
CTCTGGGTGGCAACCATCCAAACCTTCGCGGCGGCCACACTGCTCGCAGC
TTCGGCGAGCTGACGTTGGCGGATCTCAACCCTCCACCGGAAGTCGGACC
CGAAGACTGCAACCGTGACAGGGCCAACTGCCGTCCGTCGGGTGGGGACG
CAGAGGGAGATTGGACCGAGGAGTGGATGAAAATGTGCATGCCGGCGATC
GAGGGGCTGACGCTGTCGCAGCTGAGCATCCCCGGGACGCACGACTCCGG
GACGGCTAAGATGGCCAACTGCCGTCCGTCGGGTGGGGACGCAGAGGGAG
ATTGGACCGAGGAGTGGATGAAAATGTGCATGCCGGCGATCGAGGGGCTG
ACGCTGTCGCAGCTGAGCATCCCCGGGACGCACGACTCCGGGACGGCTAA
GATG
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