mRNA_H-paniculata_contig23600.6379.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23600.6379.1
Unique NamemRNA_H-paniculata_contig23600.6379.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23600.6379.1 vs. uniprot
Match: D7G5Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y2_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 7.460e-52
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 1 
Query:    1 MEESLQQQKESFGFQDSDVDDLRRLISDTNVYLLAVTLLASTLHLLFEFLAFKSDVDFWRNNKSLRGLSVRALFMEVLFQTIILFSLVEEEASLLVTVPAGVGVLIQ 321
            ME SLQQQKESFGFQDSDVDD+RRLISDTNVYLL VTL ASTLHLLFEFLAFKSDVDFWR NKSLRGLSVR LFMEV FQT+IL SL+EE+ASLLVTVPAGVGVLIQ
Sbjct:  225 MEHSLQQQKESFGFQDSDVDDVRRLISDTNVYLLIVTLFASTLHLLFEFLAFKSDVDFWRRNKSLRGLSVRTLFMEVFFQTVILLSLIEEDASLLVTVPAGVGVLIQ 331
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BLAST of mRNA_H-paniculata_contig23600.6379.1 vs. uniprot
Match: A0A6H5KJZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ5_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.060e-50
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 1 
Query:    1 MEESLQQQKESFGFQDSDVDDLRRLISDTNVYLLAVTLLASTLHLLFEFLAFKSDVDFWRNNKSLRGLSVRALFMEVLFQTIILFSLVEEEASLLVTVPAGVGVLIQ 321
            ME SLQQQKESFGFQDSDVDD+RRLISDTNVYLL VTL ASTLHLLFEFLAFKSDVDFWR NKSLRGLSVR LFMEV FQT+IL SL+EE+ASLLVTVPAGVGVLIQ
Sbjct:  207 MEHSLQQQKESFGFQDSDVDDVRRLISDTNVYLLIVTLFASTLHLLFEFLAFKSDVDFWRRNKSLRGLSVRTLFMEVFFQTVILLSLIEEDASLLVTVPAGVGVLIQ 313
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BLAST of mRNA_H-paniculata_contig23600.6379.1 vs. uniprot
Match: F0Y461_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y461_AURAN)

HSP 1 Score: 127 bits (318), Expect = 3.500e-33
Identity = 68/107 (63.55%), Postives = 87/107 (81.31%), Query Frame = 1 
Query:    1 MEESLQQQKESFGFQDSDVDDLRRLISDTNVYLLAVTLLASTLHLLFEFLAFKSDVDFWRNNKSLRGLSVRALFMEVLFQTIILFSLVEEEASLLVTVPAGVGVLIQ 321
            MEE LQ QKE FGF D+D+DD+RRLI+DT  +LLAVT+LAS LHLLFEFLAFKSDV+FW+ N SLRGLS R++ +++  Q ++L  LV++ ASLLV+VPA   +LIQ
Sbjct:   63 MEEGLQDQKEDFGFTDNDIDDVRRLIADTQTWLLAVTMLASVLHLLFEFLAFKSDVEFWQKNTSLRGLSARSVVVDLFSQIVVLAYLVDQGASLLVSVPAFGAILIQ 169
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BLAST of mRNA_H-paniculata_contig23600.6379.1 vs. uniprot
Match: A0A7S3NLU1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLU1_9STRA)

HSP 1 Score: 130 bits (326), Expect = 5.340e-33
Identity = 64/107 (59.81%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 MEESLQQQKESFGFQDSDVDDLRRLISDTNVYLLAVTLLASTLHLLFEFLAFKSDVDFWRNNKSLRGLSVRALFMEVLFQTIILFSLVEEEASLLVTVPAGVGVLIQ 321
            ME+ L+ Q+  FG  D+D+DD+RRLI+DT+ +LLAVT+LAS LHLLFEFLAFKSDV+FWRNNKSL+GLS R++ +E++ QT++L  L++E +SLLV++P+ +G+L+Q
Sbjct:  337 MEDGLRAQQRDFGLSDNDIDDVRRLIADTHTWLLAVTILASCLHLLFEFLAFKSDVEFWRNNKSLQGLSARSVIVELVSQTVVLAFLIDEGSSLLVSIPSALGILVQ 443
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BLAST of mRNA_H-paniculata_contig23600.6379.1 vs. uniprot
Match: A0A7S2Y7G9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y7G9_9STRA)

HSP 1 Score: 128 bits (321), Expect = 7.360e-33
Identity = 68/106 (64.15%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:    1 MEESLQQQKESFGFQDSDVDDLRRLISDTNVYLLAVTLLASTLHLLFEFLAFKSDVDFWRNNKSLRGLSVRALFMEVLFQTIILFSLVEEEASLLVTVPAGVGVLI 318
            + E+L++Q++  GF+ SD+D++R LI+DTNV LL +TLLAS+LHLLFEFL FK++V FW+NNK L GLSVRALFM++  QT+ILF L+E+E+SLL+TVPAGVG LI
Sbjct:  123 LSEALERQQD-LGFEQSDIDEVRSLIADTNVTLLLITLLASSLHLLFEFLTFKNEVTFWQNNKDLTGLSVRALFMDMFGQTVILFFLIEKESSLLITVPAGVGCLI 227
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BLAST of mRNA_H-paniculata_contig23600.6379.1 vs. uniprot
Match: A0A7S1Z5K9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z5K9_TRICV)

HSP 1 Score: 126 bits (316), Expect = 2.800e-32
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:   10 SLQQQKESFGFQDSDVDDLRRLISDTNVYLLAVTLLASTLHLLFEFLAFKSDVDFWRNNKSLRGLSVRALFMEVLFQTIILFSLVEEEASLLVTVPAGVGVLI 318
            +L  Q+E  GF +SD+DDLRRLI+DTNV LLAVT+LAS LHLLFEFL FK+DV+FWR NK L GLSVRALFM+   Q +IL  L+E+++SLL+TVP+GVGVLI
Sbjct:   79 ALDSQRE-MGFDESDIDDLRRLIADTNVALLAVTILASALHLLFEFLTFKNDVEFWRGNKDLTGLSVRALFMDFGSQLVILLYLMEKDSSLLMTVPSGVGVLI 180
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BLAST of mRNA_H-paniculata_contig23600.6379.1 vs. uniprot
Match: A0A8J2WZS8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZS8_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.980e-32
Identity = 65/107 (60.75%), Postives = 90/107 (84.11%), Query Frame = 1 
Query:    1 MEESLQQQKESFGFQDSDVDDLRRLISDTNVYLLAVTLLASTLHLLFEFLAFKSDVDFWRNNKSLRGLSVRALFMEVLFQTIILFSLVEEEASLLVTVPAGVGVLIQ 321
            MEE L+ Q+E FGF ++D+D++RRLI+DT  +LLAVT+LAS LHLLFEFLAFKSDVDFW+NNKSLRGLS R++ ++++ Q ++L  LV++ +SLLV++PA   +LIQ
Sbjct:  370 MEEGLKAQQEDFGFSENDIDEVRRLIADTKTWLLAVTMLASVLHLLFEFLAFKSDVDFWKNNKSLRGLSARSVVVDLISQIVVLAYLVDQGSSLLVSIPAAGAILIQ 476
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BLAST of mRNA_H-paniculata_contig23600.6379.1 vs. uniprot
Match: A0A7S4MUY3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MUY3_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.610e-31
Identity = 69/103 (66.99%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:   10 SLQQQKESFGFQDSDVDDLRRLISDTNVYLLAVTLLASTLHLLFEFLAFKSDVDFWRNNKSLRGLSVRALFMEVLFQTIILFSLVEEEASLLVTVPAGVGVLI 318
            +L+ Q+E  GF +SD+DD+RRLI+DTNV LL VT+LASTLHLLFEFL FK+DV+FWR NK L GLSVRALFM+   Q IIL  LVE+++SLL+TVP+  GVLI
Sbjct:   41 ALESQRE-MGFDESDIDDVRRLIADTNVALLTVTMLASTLHLLFEFLTFKNDVEFWRGNKDLTGLSVRALFMDFGSQLIILLYLVEKDSSLLMTVPSAFGVLI 142
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BLAST of mRNA_H-paniculata_contig23600.6379.1 vs. uniprot
Match: A0A7S0AF27_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AF27_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.720e-31
Identity = 62/93 (66.67%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:   40 FQDSDVDDLRRLISDTNVYLLAVTLLASTLHLLFEFLAFKSDVDFWRNNKSLRGLSVRALFMEVLFQTIILFSLVEEEASLLVTVPAGVGVLI 318
            F+ SD+DDLRRLI++TNV LLA+T+LASTLHLLFEFL FKSD+DFW+ NK L GLSVRALFM+ + Q IIL  L+E ++SLL+T+P+  GV+I
Sbjct:    1 FEQSDIDDLRRLIAETNVTLLAITMLASTLHLLFEFLTFKSDIDFWKGNKDLTGLSVRALFMDFISQLIILLYLIEMDSSLLMTIPSAFGVII 93
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BLAST of mRNA_H-paniculata_contig23600.6379.1 vs. uniprot
Match: A0A8J9SA00_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SA00_PHATR)

HSP 1 Score: 117 bits (293), Expect = 4.510e-31
Identity = 58/100 (58.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:   19 QQKESFGFQDSDVDDLRRLISDTNVYLLAVTLLASTLHLLFEFLAFKSDVDFWRNNKSLRGLSVRALFMEVLFQTIILFSLVEEEASLLVTVPAGVGVLI 318
            +Q+   GF+ SD+DD+RRLI++TNV LLA+T+LAS LHLLFEFL FKS+V+FW  N+ L GLSVR+LF++++ QT+ILF L+++++SLL+T+P+  G LI
Sbjct:   77 EQQTQLGFEQSDIDDVRRLIAETNVTLLAITMLASALHLLFEFLTFKSEVNFWSKNEDLTGLSVRSLFLDMIGQTVILFFLIDKDSSLLMTIPSACGCLI 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23600.6379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Y2_ECTSI7.460e-5289.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJZ5_9PHAE1.060e-5089.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y461_AURAN3.500e-3363.55Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3NLU1_9STRA5.340e-3359.81Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2Y7G9_9STRA7.360e-3364.15Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1Z5K9_TRICV2.800e-3267.96Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A8J2WZS8_9STRA3.980e-3260.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4MUY3_9STRA1.610e-3166.99Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0AF27_9STRA3.720e-3166.67Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A8J9SA00_PHATR4.510e-3158.00Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23600contigH-paniculata_contig23600:475..1786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue2.2e-43
Seed eggNOG ortholog2880.D7G5Y2
Preferred nameCLPTM1L
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0016020,GO:0016021,GO:0031224,GO:0044425
EggNOG free text desc.apoptotic process
EggNOG OGsKOG2489@1,KOG2489@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size321
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929671.4748347-CDS-H-paniculata_contig23600:474..6181622929671.4748347-CDS-H-paniculata_contig23600:474..618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23600 475..618 +
1691480960.6386006-CDS-H-paniculata_contig23600:474..6181691480960.6386006-CDS-H-paniculata_contig23600:474..618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23600 475..618 +
1622929671.5001702-CDS-H-paniculata_contig23600:1609..17861622929671.5001702-CDS-H-paniculata_contig23600:1609..1786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23600 1610..1786 +
1691480960.6517572-CDS-H-paniculata_contig23600:1609..17861691480960.6517572-CDS-H-paniculata_contig23600:1609..1786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23600 1610..1786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23600.6379.1prot_H-paniculata_contig23600.6379.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23600 475..1786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23600.6379.1

>prot_H-paniculata_contig23600.6379.1 ID=prot_H-paniculata_contig23600.6379.1|Name=mRNA_H-paniculata_contig23600.6379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MEESLQQQKESFGFQDSDVDDLRRLISDTNVYLLAVTLLASTLHLLFEFL
AFKSDVDFWRNNKSLRGLSVRALFMEVLFQTIILFSLVEEEASLLVTVPA
GVGVLIQ
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mRNA from alignment at H-paniculata_contig23600:475..1786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23600.6379.1 ID=mRNA_H-paniculata_contig23600.6379.1|Name=mRNA_H-paniculata_contig23600.6379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1312bp|location=Sequence derived from alignment at H-paniculata_contig23600:475..1786+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAATCTCTGCAGCAGCAGAAGGAAAGCTTCGGCTTCCAGGACTC
TGACGTCGATGACCTACGGCGCCTCATCAGCGACACCAATGTGTATCTTC
TGGCCGTCACCCTGCTAGCTTCCACGCTGCATCTTCTGTTTGAGGTACAG
GAGGCAACTGTATGTATGTACATATATATATATATATATATATATATATA
CTTCCTCTGTCTCATAAGTATACTCAGTTATGGTTGTAGAGGTACTTCAA
CATCTCCGTTTTTTCTTTTTTTTAATGGGCTTCTACATGTTTTCTGGGTT
GAAAGCCAAATTTGGGGTCAAACCTTTGACTTGTAAACACCAAAACACGC
GCCATGAAAAGAGGCACTCAGCCGAATAAAGACTCTTTTCGGGGACTTTC
GGTATTGTCCCACAAGCAGAGTATATTGTGATTAGACACGCGCATAATTT
GTCTCCTTTTTTTTTTTTTTTAGTAGAATATTTCAAGTTTTGGCGGTTGA
ACCCCTAAGTATTGAGTTAAATACATAACTTTTTACACCAAATTGTGCAC
TATTTTTGTCGAGTTCTACCCGAAAAACTCCCCCAAAAGGCCCATCTTTT
GGCCGAGTACGTTTCTTCACGGCGCGTGTTTTGGTGTTAAAACCAACTGT
TCGACCCCAAAAAATGGCTTTCAACCCCAAAAAAAACATGTAGAATTCCA
TAAATAAGTAAACGATCGGAGGCGTTTAAGTGCCTCTATAATAGTAACTG
AGTATGCTTATGAGACTGAGGAAGTATGCATATATATGTGTGTGTATTTA
TTATATTTATATATATATATATATATCGTCCACCTCGTTAACGCTTTCAA
GATCCACACTGTTTGTCGCTCCCCTCAGCCCACTTTTCCCTAAGACCAGA
AACCCCTACATCACGGCTGTTCTTGGCGGCGAAGAAGCTTCCCATCTACT
TTAGAGCATCTATTCTTCCATTTTCCGGCAGCTTTCTGCATTTTCAATCC
CCCTCCCTGTTGTTTTCGCGTGGTCCCTCCTCTCTCTTTGTCTCCCCTTA
TCTCTCTCTTCCCGTGTCTGCCTCTGTCTCTGCCTCTGTCTCTGCGCCCG
TCTCTGTCTCTGTCTTTGTCTTGCTTCTATTACAGTTCTTAGCGTTCAAG
TCTGATGTTGACTTCTGGCGAAATAACAAAAGCCTCCGGGGGCTGTCGGT
GCGCGCGCTGTTCATGGAAGTCTTGTTCCAGACGATCATTCTATTCTCGC
TCGTGGAGGAAGAAGCTTCTCTCCTCGTGACCGTGCCGGCGGGGGTCGGT
GTGCTAATACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig23600:475..1786+

>mRNA_H-paniculata_contig23600.6379.1 ID=mRNA_H-paniculata_contig23600.6379.1|Name=mRNA_H-paniculata_contig23600.6379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig23600:475..1786+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAATCTCTGCAGCAGCAGAAGGAAAGCTTCGGCTTCCAGGACTC
TGACGTCGATGACCTACGGCGCCTCATCAGCGACACCAATGTGTATCTTC
TGGCCGTCACCCTGCTAGCTTCCACGCTGCATCTTCTGTTTGAGATGGAG
GAATCTCTGCAGCAGCAGAAGGAAAGCTTCGGCTTCCAGGACTCTGACGT
CGATGACCTACGGCGCCTCATCAGCGACACCAATGTGTATCTTCTGGCCG
TCACCCTGCTAGCTTCCACGCTGCATCTTCTGTTTGAGTTCTTAGCGTTC
AAGTCTGATGTTGACTTCTGGCGAAATAACAAAAGCCTCCGGGGGCTGTC
GGTGCGCGCGCTGTTCATGGAAGTCTTGTTCCAGACGATCATTCTATTCT
CGCTCGTGGAGGAAGAAGCTTCTCTCCTCGTGACCGTGCCGGCGGGGGTC
GGTGTGCTAATACAGTTCTTAGCGTTCAAGTCTGATGTTGACTTCTGGCG
AAATAACAAAAGCCTCCGGGGGCTGTCGGTGCGCGCGCTGTTCATGGAAG
TCTTGTTCCAGACGATCATTCTATTCTCGCTCGTGGAGGAAGAAGCTTCT
CTCCTCGTGACCGTGCCGGCGGGGGTCGGTGTGCTAATACAG
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