mRNA_H-paniculata_contig2355.6362.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 165 bits (418), Expect = 2.300e-44 Identity = 112/296 (37.84%), Postives = 158/296 (53.38%), Query Frame = 1
Query: 1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMP---RQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
PEG G K NK +YG+ A R W + L +GF Q AD+CVFR I +G V + V HVDD F I + ++ DL + +++LG+ ++Y GC RD KI Q YA+ + FG+ +P VG K LS+ D Q+E E+ +P+RE + +LM AT TRPDIA AVR +A++C +P H +A IL V+RT+DLGI + G + L M + D+DY R + GL GGG I W SRT++ T EAEYV+L + ++
Sbjct: 58 PEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC--DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD----QDE--EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVM---CGGGCISWFSRTQKCVTLSTTEAEYVSLADVMK 341
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 165 bits (418), Expect = 3.520e-43 Identity = 112/296 (37.84%), Postives = 158/296 (53.38%), Query Frame = 1
Query: 1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMP---RQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
PEG G K NK +YG+ A R W + L +GF Q AD+CVFR I +G V + V HVDD F I + ++ DL + +++LG+ ++Y GC RD KI Q YA+ + FG+ +P VG K LS+ D Q+E E+ +P+RE + +LM AT TRPDIA AVR +A++C +P H +A IL V+RT+DLGI + G + L M + D+DY R + GL GGG I W SRT++ T EAEYV+L + ++
Sbjct: 232 PEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC--DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD----QDE--EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVM---CGGGCISWFSRTQKCVTLSTTEAEYVSLADVMK 515
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 162 bits (410), Expect = 5.320e-43 Identity = 107/293 (36.52%), Postives = 146/293 (49.83%), Query Frame = 1
Query: 1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
P+G G K K +YG+ A R W + L A+GFEQ AD+CVFR I DG V +I V HVDD F + + ++ ADL +++LGE ++Y GC R+K I Q + +A +G+V +P + G K LS D E FP+RE V +LM AT TRPDIA AVR +A++C +P H A IL RT+ GI + G + YAD+D+ GGGA+ W SRT++ T EAEYVAL + V+
Sbjct: 82 PQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERC--DKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVK 365
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A182HAB7_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAB7_AEDAL) HSP 1 Score: 159 bits (403), Expect = 2.450e-42 Identity = 89/287 (31.01%), Postives = 155/287 (54.01%), Query Frame = 1
Query: 1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDDFLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGK-PLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYGGQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVAL 858
PEGY P K K +YG+ + R W+ ++ E LKA G +S+ D C++ + + + +VDDFL+ + ++L L S++ ++++GEAK+ LG I RD+ + +DQ Y + + + F + + + + L K GP+T EE+ E++ P++EAV +L+ A TRPDIA+AV +++F NPGR H +AV++I+ + T D ++Y + + ++ Y D+D+ G P GGA+ W + + A + EAE++AL
Sbjct: 35 PEGYVVDPTKVCKLQKALYGLKQSSRVWNTQLDEALKAFGLIRSNLDPCLYFILKEDGKMLFVTIYVDDFLVFTNDEELKKKLKCYLNSRFKMKNIGEAKFCLGLQITRDRTNGKLFLDQQAYIKDVLKRFNMENSKPVATPMDSNVKLDKSRGPKTPEEMAEMKNVPFKEAVGSLLYAAQATRPDIAFAVNLVSQFSINPGRQHWEAVKRIMRYLRGTLDAKLMYT-RGGDSQLTGYTDADWGGDPDTRKSTTGYVFRKMGGAVSWSVKRQPSVALSSCEAEFIAL 320
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 165 bits (418), Expect = 2.450e-42 Identity = 112/296 (37.84%), Postives = 158/296 (53.38%), Query Frame = 1
Query: 1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMP---RQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
PEG G K NK +YG+ A R W + L +GF Q AD+CVFR I +G V + V HVDD F I + ++ DL + +++LG+ ++Y GC RD KI Q YA+ + FG+ +P VG K LS+ D Q+E E+ +P+RE + +LM AT TRPDIA AVR +A++C +P H +A IL V+RT+DLGI + G + L M + D+DY R + GL GGG I W SRT++ T EAEYV+L + ++
Sbjct: 753 PEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC--DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFD----QDE--EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVM---CGGGCISWFSRTQKCVTLSTTEAEYVSLADVMK 1036
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A165U314_9ROSI (Gag/pol protein n=1 Tax=Momordica dioica TaxID=654836 RepID=A0A165U314_9ROSI) HSP 1 Score: 163 bits (412), Expect = 1.600e-41 Identity = 100/292 (34.25%), Postives = 158/292 (54.11%), Query Frame = 1
Query: 1 PEGY--QEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDDFLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIV--KTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYGGQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVE 864
PEG+ Q+ A K IYG+ A R W+++ E +KA GF Q+ +SCV++KIS V + + +VDD L+ +E++ L + + ++DLGEA+Y LG I RD+ + + Q Y + F + K +LP G LSKE P+T +EV++++ PY A+ +LM TRPD+ YA+ ++++ NPGR H AV+ IL + RT ++ ++YGG + +L + Y DS + + + + GGA+ W S + A T EAEYVA E
Sbjct: 951 PEGFVAQDQEQKACKLQGSIYGLKQASRSWNIRFDEVIKAFGFIQNVDESCVYKKISGSVVAFL-ILYVDDILLIGNDVEYLEDVKKWLNTSFSMKDLGEAQYILGIRIYRDRSNKTIGMSQSTYIDKVLSRFKMQDSKKGLLPFR-HGIHLSKEQCPKTPQEVEDMRNIPYSSAIGSLMYAMLCTRPDVCYALSIVSRYQSNPGRDHWTAVKNILKYLRRTRNMFLVYGG-DKDLAVKGYTDSSFQ-TDKDDSKSQSGVFTLNGGAVSWRSSKQTCVADSTCEAEYVAACE 1238
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A4S4K4J9_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K4J9_9APHY) HSP 1 Score: 157 bits (398), Expect = 2.590e-41 Identity = 102/287 (35.54%), Postives = 150/287 (52.26%), Query Frame = 1
Query: 22 PGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVF-RKIS--DGEVRMIGVSHVDDFLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGI-----VKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYGGQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVAL 858
PG K +YG+ AGR W K+ + L+ +GF +S D VF R++S +G + HVDD + + M +L+A L+S++ + + G Y LG HI RD+ +R Q Y I + V T M P LSKE ++ + +E++ PYREA+ ALM + TRPDI YAV T+AKF +NPG TH A++++ + T + GG +SE+ + Y DSD GM R + Y GGAI W S+ +++ T EAEY+AL
Sbjct: 47 PGQVLKLRACLYGLKQAGRRWYQKLRDALRQIGFTRSQFDHAVFYRRLSPAEGSGTAVIFCHVDDMGL-KANKKYMPQLIAALRSRFELSEGGRIHYLLGMHITRDREKRTISFSQXAYINRILTRYRFDEVRTVTTPMDPNVA----LSKEQCAISERQKEEMKDKPYREALGALMYASVGTRPDITYAVSTLAKFSQNPGPTHWTALKRVFAYLRGTQHYTLTLGGDSSEV-LTGYCDSD--GMSRPDRHPIAAYVFTIGGAISWSSKRQDIVCLSTTEAEYIAL 325
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE) HSP 1 Score: 162 bits (410), Expect = 3.110e-41 Identity = 107/293 (36.52%), Postives = 146/293 (49.83%), Query Frame = 1
Query: 1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
P+G G K K +YG+ A R W + L A+GFEQ AD+CVFR I DG V +I V HVDD F + + ++ ADL +++LGE ++Y GC R+K I Q + +A +G+V +P + G K LS D E FP+RE V +LM AT TRPDIA AVR +A++C +P H A IL RT+ GI + G + YAD+D+ GGGA+ W SRT++ T EAEYVAL + V+
Sbjct: 1418 PQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERC--DKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVK 1701
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE) HSP 1 Score: 162 bits (410), Expect = 3.120e-41 Identity = 107/293 (36.52%), Postives = 146/293 (49.83%), Query Frame = 1
Query: 1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
P+G G K K +YG+ A R W + L A+GFEQ AD+CVFR I DG V +I V HVDD F + + ++ ADL +++LGE ++Y GC R+K I Q + +A +G+V +P + G K LS D E FP+RE V +LM AT TRPDIA AVR +A++C +P H A IL RT+ GI + G + YAD+D+ GGGA+ W SRT++ T EAEYVAL + V+
Sbjct: 1204 PQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERC--DKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVK 1487
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE) HSP 1 Score: 162 bits (410), Expect = 3.260e-41 Identity = 107/293 (36.52%), Postives = 146/293 (49.83%), Query Frame = 1
Query: 1 PEGYQEFPGAAGKFNKVIYGMVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDD-FLIARKGPVIMEELLADLQSKYLIRDLGEAKYYLGCHIPRDKLRREFKIDQHLYAQTIAELFGIVKTSMLPGTVGGKPLSKEDGPRTQEEVQEIQIFPYREAVRALM*TATMTRPDIAYAVRTIAKFCENPGRTHKKAVEKIL*LVLRTADLGIIYG-GQNSELKMLAYADSDYTGMPRQPAFGLQRYGAVGGGAICWHSRTREVTAAGTREAEYVALVEFVR 873
P+G G K K +YG+ A R W + L A+GFEQ AD+CVFR I DG V +I V HVDD F + + ++ ADL +++LGE ++Y GC R+K I Q + +A +G+V +P + G K LS D E FP+RE V +LM AT TRPDIA AVR +A++C +P H A IL RT+ GI + G + YAD+D+ GGGA+ W SRT++ T EAEYVAL + V+
Sbjct: 1272 PQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERC--DKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-LSDFDADEVATE------FPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVK 1555 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2355.6362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2355.6362.1 >prot_H-paniculata_contig2355.6362.1 ID=prot_H-paniculata_contig2355.6362.1|Name=mRNA_H-paniculata_contig2355.6362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp MVHAGRCWSMKVTENLKAVGFEQSHADSCVFRKISDGEVRMIGVSHVDDFback to top mRNA from alignment at H-paniculata_contig2355:11527..12408- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2355.6362.1 ID=mRNA_H-paniculata_contig2355.6362.1|Name=mRNA_H-paniculata_contig2355.6362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=882bp|location=Sequence derived from alignment at H-paniculata_contig2355:11527..12408- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2355:11527..12408- >mRNA_H-paniculata_contig2355.6362.1 ID=mRNA_H-paniculata_contig2355.6362.1|Name=mRNA_H-paniculata_contig2355.6362.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig2355:11527..12408- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |