mRNA_H-paniculata_contig23460.6335.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23460.6335.1
Unique NamemRNA_H-paniculata_contig23460.6335.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23460.6335.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 6.660e-6
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   43 CKFRHGPRPTNFNELLNCIEKMTCLPDDDRQQMVVFRDPRAVVVSTFFHKKS 198
            C   +G R  N+ + + C+++  C   DDR QM++ RDPRAV VS+FFH K+
Sbjct:  231 CTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKT 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23460.6335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJE4_ECTSI6.660e-644.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23460contigH-paniculata_contig23460:916..1604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929666.0991542-CDS-H-paniculata_contig23460:915..10201622929666.0991542-CDS-H-paniculata_contig23460:915..1020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23460 916..1020 +
1691480958.2238958-CDS-H-paniculata_contig23460:915..10201691480958.2238958-CDS-H-paniculata_contig23460:915..1020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23460 916..1020 +
1622929666.1121328-CDS-H-paniculata_contig23460:1475..16041622929666.1121328-CDS-H-paniculata_contig23460:1475..1604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23460 1476..1604 +
1691480958.2319386-CDS-H-paniculata_contig23460:1475..16041691480958.2319386-CDS-H-paniculata_contig23460:1475..1604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23460 1476..1604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23460.6335.1prot_H-paniculata_contig23460.6335.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23460 916..1604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23460.6335.1

>prot_H-paniculata_contig23460.6335.1 ID=prot_H-paniculata_contig23460.6335.1|Name=mRNA_H-paniculata_contig23460.6335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MRHSHAIEQEGSIPCKFRHGPRPTNFNELLNCIEKMTCLPDDDRQQMVVF
RDPRAVVVSTFFHKKSRARERKGKPFSK
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mRNA from alignment at H-paniculata_contig23460:916..1604+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23460.6335.1 ID=mRNA_H-paniculata_contig23460.6335.1|Name=mRNA_H-paniculata_contig23460.6335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=689bp|location=Sequence derived from alignment at H-paniculata_contig23460:916..1604+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGACATTCTCATGCTATTGAACAAGAAGGCTCGATTCCTTGTAAATT
TCGGCATGGTCCTAGGCCGACAAATTTCAACGAGCTGCTGAACTGCATCG
AAAAGGTAGGATACAGCCCTACGTGGGTGCCACAACGGCTTGAGCGAGTT
TTTCTCACTTGTCTTGCCCGTTCCCGTGGTTTCCGCACATTGACCCCAAC
CCATAGATACGCAACACTGTTGTATTCTCTTGCGGTTGTAGACATAGATC
TCGGAACCGCGAACACGATGGGTAGATTGGCTCACATGGAGATCCCGCCG
ACAGCGGATGACGCGAAAAGACCAATTACAACATTTAGGAGGATGTAATG
GCTATTTGATATTACTTCGATGTGTTTCCAAAGCTGTGATCATTGCGGTG
CTGCAACTATAGTCAGGGAGAAGAATGTGCCCAGTCTTTTCGGGCTGTTG
AATAAAACTGACTATCGGAAGCCCACAATAACGCTGCTTTACTTGTTGCT
ACTGCACCTTTTGTATCCTGACATGAAGGCATCTCGCGTTTCACTTCTTG
CGCATCACAGATGACATGCCTTCCCGATGACGATCGACAGCAAATGGTGG
TGTTTCGTGACCCTCGGGCCGTGGTCGTTTCGACGTTCTTTCATAAGAAG
AGCCGGGCTCGGGAACGGAAAGGGAAACCTTTCTCGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig23460:916..1604+

>mRNA_H-paniculata_contig23460.6335.1 ID=mRNA_H-paniculata_contig23460.6335.1|Name=mRNA_H-paniculata_contig23460.6335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig23460:916..1604+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGACATTCTCATGCTATTGAACAAGAAGGCTCGATTCCTTGTAAATT
TCGGCATGGTCCTAGGCCGACAAATTTCAACGAGCTGCTGAACTGCATCG
AAAAGATGAGACATTCTCATGCTATTGAACAAGAAGGCTCGATTCCTTGT
AAATTTCGGCATGGTCCTAGGCCGACAAATTTCAACGAGCTGCTGAACTG
CATCGAAAAGATGACATGCCTTCCCGATGACGATCGACAGCAAATGGTGG
TGTTTCGTGACCCTCGGGCCGTGGTCGTTTCGACGTTCTTTCATAAGAAG
AGCCGGGCTCGGGAACGGAAAGGGAAACCTTTCTCGAAGATGACATGCCT
TCCCGATGACGATCGACAGCAAATGGTGGTGTTTCGTGACCCTCGGGCCG
TGGTCGTTTCGACGTTCTTTCATAAGAAGAGCCGGGCTCGGGAACGGAAA
GGGAAACCTTTCTCGAAG
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