mRNA_H-paniculata_contig23459.6331.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23459.6331.1
Unique NamemRNA_H-paniculata_contig23459.6331.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23459.6331.1 vs. uniprot
Match: A0A6H5JNV3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNV3_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.830e-37
Identity = 67/88 (76.14%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:    1 HWNSEMKEVKMSYKIEQHDYGVRVKNVKKFVAQGNRVRVVVQFRGREQSHMDLGTVLLDKVVKDMDGLANAEPKRREGNRLSMILFPK 264
            H  +EMKEVKMSYKIE HDY VR++N +KFV QG+RVR+VV FRGREQSHMDLG VLLDKV  D++GLA  EPKRREGNRLSMI+FPK
Sbjct:  198 HKATEMKEVKMSYKIETHDYMVRLRNAQKFVKQGHRVRIVVTFRGREQSHMDLGNVLLDKVTNDLEGLALVEPKRREGNRLSMIVFPK 285
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BLAST of mRNA_H-paniculata_contig23459.6331.1 vs. uniprot
Match: A0A836C915_9STRA (Translation initiation factor IF-3, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C915_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.000e-29
Identity = 59/86 (68.60%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:   10 SEMKEVKMSYKIEQHDYGVRVKNVKKFVAQGNRVRVVVQFRGREQSHMDLGTVLLDKVVKDMDGLANAEPK-RREGNRLSMILFPK 264
            SEMKEVKMSYKIE HDY VR++N KKF+AQG+RV+VVVQFRGREQ HMDLG  LL K+V D +G    + + +REGNRLS+IL PK
Sbjct:  180 SEMKEVKMSYKIEDHDYQVRLRNAKKFIAQGDRVKVVVQFRGREQQHMDLGHELLTKIVADCEGTVATDGRPKREGNRLSLILAPK 265
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BLAST of mRNA_H-paniculata_contig23459.6331.1 vs. uniprot
Match: A0A6V1LHA9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LHA9_HETAK)

HSP 1 Score: 103 bits (257), Expect = 3.220e-25
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:   13 EMKEVKMSYKIEQHDYGVRVKNVKKFVAQGNRVRVVVQFRGREQSHMDLGTVLLDKVVKDMDGLANAEPKRREGNRLSMILFPK 264
            E+KEVKMSYKIE+HDY VR K   KF+  G+RV+++VQFRGREQ HMDLG  LL ++  D++ LA  EP RREGNRL+M+L P+
Sbjct:  142 ELKEVKMSYKIEKHDYEVRAKAATKFLKGGHRVKLLVQFRGREQQHMDLGRDLLGRLSGDVEDLALPEPIRREGNRLTMLLTPR 225
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BLAST of mRNA_H-paniculata_contig23459.6331.1 vs. uniprot
Match: A0A7S2H9R6_9STRA (Translation initiation factor IF-3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H9R6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.270e-20
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:   10 SEMKEVKMSYKIEQHDYGVRVKNVKKFVAQGNRVRVVVQFRGREQSHMDLGTVLLDKVVKDMDGLANAEPKRREGNRLSMILFP 261
            +EMKEVKMSYKI+ HDY VR K   KF+  G+RV+ VVQFRGREQ H++LG  LL K+ +D    A ++  RREGNR+ M + P
Sbjct:  143 NEMKEVKMSYKIDTHDYMVRQKAAIKFLKSGSRVKAVVQFRGREQQHINLGQELLKKLSEDCKEFATSDRPRREGNRVVMFINP 226
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BLAST of mRNA_H-paniculata_contig23459.6331.1 vs. uniprot
Match: W7TKZ8_9STRA (Translation initiation factor if-3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKZ8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.120e-20
Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:   10 SEMKEVKMSYKIEQHDYGVRVKNVKKFVAQGNRVRVVVQFRGREQSHMDLGTVLLDKVVKDMDGLANAEPK-RREGNRLSMILFPK 264
            +E+KEVKMSYKIE HDYGVR+K + +F+ +G++V+V++QFRGREQ H+DLG  LL KV  D+  LA  E   RREG RL  +  PK
Sbjct:  247 TEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPK 332
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BLAST of mRNA_H-paniculata_contig23459.6331.1 vs. uniprot
Match: A0A7S3KWM0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWM0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.480e-20
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:   10 SEMKEVKMSYKIEQHDYGVRVKNVKKFVAQGNRVRVVVQFRGREQSHMDLGTVLLDKVVKDMDGLANAEPK-RREGNRLSMILFPK 264
            SE+KEVKMSYKI+ HDY VR KN  KF+ QG+RV+  V FRGRE  H +LG  LLDK+ +++  LA  E + +REG  LS+IL P+
Sbjct:  141 SELKEVKMSYKIDIHDYSVRKKNAAKFLQQGDRVKCTVMFRGREVQHDNLGFELLDKMAEELSNLAAKEGRPKREGRNLSLILGPR 226
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BLAST of mRNA_H-paniculata_contig23459.6331.1 vs. uniprot
Match: UPI0002ABCB49 (translation initiation factor IF-3 n=1 Tax=Leptolyngbya sp. PCC 6406 TaxID=1173264 RepID=UPI0002ABCB49)

HSP 1 Score: 87.8 bits (216), Expect = 7.270e-20
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    7 NSEMKEVKMSYKIEQHDYGVRVKNVKKFVAQGNRVRVVVQFRGREQSHMDLGTVLLDKVVKDMDGLANAEPK-RREGNRLSMILFPK 264
            N+E+KEVKM YKI+ HDY VRVKN ++F+  G++V+  + FRGRE  H DL   LL ++ KD+D +A  +   +REG  + M+L PK
Sbjct:   87 NAEVKEVKMRYKIDDHDYNVRVKNAQRFLQSGDKVKATIMFRGREIQHSDLAEQLLRRMAKDLDAVAEMQQAPKREGRNMMMMLSPK 173
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BLAST of mRNA_H-paniculata_contig23459.6331.1 vs. uniprot
Match: A0A0P7ZU86_9CYAN (Translation initiation factor IF-3 n=5 Tax=Phormidium TaxID=1198 RepID=A0A0P7ZU86_9CYAN)

HSP 1 Score: 87.8 bits (216), Expect = 8.170e-20
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:    7 NSEMKEVKMSYKIEQHDYGVRVKNVKKFVAQGNRVRVVVQFRGREQSHMDLGTVLLDKVVKDMDGLANAEPK-RREGNRLSMILFPK 264
            +SE+KEVKM YKIE HDY VRVK  ++F+  G++V+  V FRGRE  H DL   LL+++ KD+D +A  + + +REG  + M+L PK
Sbjct:   90 SSELKEVKMRYKIEDHDYMVRVKQAQRFLKSGDKVKATVMFRGREIQHTDLAYQLLERLAKDLDDMAEVQQRPKREGRSMMMMLAPK 176
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BLAST of mRNA_H-paniculata_contig23459.6331.1 vs. uniprot
Match: A0A7S2MWU2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MWU2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.370e-19
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:   13 EMKEVKMSYKIEQHDYGVRVKNVKKFVAQGNRVRVVVQFRGREQSHMDLGTVLLDKVVKDMDGLANAEPK-RREGNRLSMILFPK 264
            E+KEVKMSYKI+ HDYGVR KN  KF+ QGNRV+  V F+GRE  H +LG  LL+K+ +DM  +   + K +REG  LS  + PK
Sbjct:  174 EVKEVKMSYKIDVHDYGVRKKNASKFINQGNRVKCTVMFKGREVQHDNLGYDLLNKLAEDMQDICTMDGKPKREGRNLSCFVVPK 258
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BLAST of mRNA_H-paniculata_contig23459.6331.1 vs. uniprot
Match: A0A448ZK50_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZK50_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.900e-19
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:   10 SEMKEVKMSYKIEQHDYGVRVKNVKKFVAQGNRVRVVVQFRGREQSHMDLGTVLLDKVVKDMDGLANAEPK-RREGNRLSMILFPK 264
            +E+KEVKMSYKI+ HDY VR KN  KF+ QGNRV+  V FRGRE  H  LG  LLDK+ ++M+ +   E + +REG  LSMI+ P+
Sbjct:  159 TEIKEVKMSYKIDVHDYEVRKKNALKFLKQGNRVKCSVMFRGREVQHDKLGYELLDKLAEEMEDMCTREGRPKREGRNLSMIVTPR 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23459.6331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNV3_9PHAE3.830e-3776.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C915_9STRA1.000e-2968.60Translation initiation factor IF-3, C-terminal dom... [more]
A0A6V1LHA9_HETAK3.220e-2561.90Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2H9R6_9STRA1.270e-2055.95Translation initiation factor IF-3 n=1 Tax=Dictyoc... [more]
W7TKZ8_9STRA2.120e-2056.98Translation initiation factor if-3 n=2 Tax=Monodop... [more]
A0A7S3KWM0_9STRA5.480e-2055.81Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
UPI0002ABCB497.270e-2048.28translation initiation factor IF-3 n=1 Tax=Leptoly... [more]
A0A0P7ZU86_9CYAN8.170e-2049.43Translation initiation factor IF-3 n=5 Tax=Phormid... [more]
A0A7S2MWU2_9STRA2.370e-1954.12Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A448ZK50_9STRA2.900e-1954.65Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23459contigH-paniculata_contig23459:212..1860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue4.3e-29
Seed eggNOG ortholog2880.D8LS76
KEGG koko:K02520
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGs2QUHV@2759,COG0290@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons3
Model size276
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23459.6331.1prot_H-paniculata_contig23459.6331.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23459 227..1860 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.5317166-UTR-H-paniculata_contig23459:211..2261622929665.5317166-UTR-H-paniculata_contig23459:211..226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23459 212..226 +
1691480957.912332-UTR-H-paniculata_contig23459:211..2261691480957.912332-UTR-H-paniculata_contig23459:211..226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23459 212..226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.549043-CDS-H-paniculata_contig23459:226..3191622929665.549043-CDS-H-paniculata_contig23459:226..319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23459 227..319 +
1691480957.9267385-CDS-H-paniculata_contig23459:226..3191691480957.9267385-CDS-H-paniculata_contig23459:226..319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23459 227..319 +
1622929665.5714664-CDS-H-paniculata_contig23459:711..8011622929665.5714664-CDS-H-paniculata_contig23459:711..801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23459 712..801 +
1691480957.9357386-CDS-H-paniculata_contig23459:711..8011691480957.9357386-CDS-H-paniculata_contig23459:711..801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23459 712..801 +
1622929665.5895376-CDS-H-paniculata_contig23459:1782..18601622929665.5895376-CDS-H-paniculata_contig23459:1782..1860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23459 1783..1860 +
1691480957.9442618-CDS-H-paniculata_contig23459:1782..18601691480957.9442618-CDS-H-paniculata_contig23459:1782..1860Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23459 1783..1860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23459.6331.1

>prot_H-paniculata_contig23459.6331.1 ID=prot_H-paniculata_contig23459.6331.1|Name=mRNA_H-paniculata_contig23459.6331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MKEVKMSYKIEQHDYGVRVKNVKKFVAQGNRVRVVVQFRGREQSHMDLGT
VLLDKVVKDMDGLANAEPKRREGNRLSMILFPKTLA*
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mRNA from alignment at H-paniculata_contig23459:212..1860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23459.6331.1 ID=mRNA_H-paniculata_contig23459.6331.1|Name=mRNA_H-paniculata_contig23459.6331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1649bp|location=Sequence derived from alignment at H-paniculata_contig23459:212..1860+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTGGAACTCAGAGATGAAGGAGGTGAAGATGTCGTACAAGATTGAGCA
GCACGACTACGGTGTGCGAGTTAAAAATGTCAAGAAATTCGTCGCACAGG
GCAATCGGGTGAGTAAAAGAAAAATAGCTGTGAAATTGTGCTCAAGTACC
CTCTGTTGCGTACTCTTTTTTAGTTTTATTTGCTTTTTCTCTCTCGGTAT
TCAGTACGGTCTCTCGGACCCACGGTAAAGACCGCTGGAGGAAACTCTTG
TATTTATGGTGTTTGTACTCATGTCCCCGCTCGTTAGACATATGTTACTC
AATATTACTGAAGTAATGTTCACGCATCCCATTTTTGCTGTGTATTTCTA
GCGGGGGTGTTTGCCACAGGGCATGCTGTGGTGTGTCCTTCCGAGTTTTT
CGGGCTTGGATATCTAGTGGCCTGACTCGAATGACATTCGCCAATATTTA
TTTATTTGCTTGTTGTTGCCAAAAAAAACTGCCTGCTTTCTTTTTTACAG
GTGCGTGTTGTTGTTCAATTCCGTGGGCGAGAGCAGTCGCACATGGACTT
GGGGACAGTGCTGTTGGACAAGGTCGTCAAGGACATGGATGTGAGAGATG
CGATAGAAGCTGAATTTATCGACGGGAGGCTGACACCTGTTAGGGTTGAG
TGATTGGGTACTTGACGGGTGTCCCGAGATGTATTTGAAAAAAGAACACC
TCGACATGTCTCAAATTGCTTCAACAGCTGAATGATAAGTTATATGGTCA
ACGAGTGCTCTCCTAACGGTACATCAACATAGTGAGTGATTGGTAGTCAG
GTTTTCCAGAGTGTTTTCTTGTCCTCTGCCTCCCGTCGTCGTCCTCATTC
GTTTTGCCTGACAAGTGTTTTTGTCTTTTTCTGTTTTTTCCTCTGATAAA
GATGTAGTCAGTCTCTTTTGAGATTGCGGTATATTTTGCCCCACGCAACT
GCTCTATTCTATCGCTATCATATCGACGTGTTTGTTTTATATATATTTTT
TCTTACGTTAGAATTCCACGTCTCCAAGCCCGTACGAAATATCGATGTAT
ATGATGTCTTGTGGATACTTACAGACCACACCAGCGTGGAATCGAACGAG
ATGACTGCGAGGCTCTTTAGCCCTCCCTCCCCCGCCCCGATCAGTAGCAG
GCTTTTCATCCACATTTCTTGTTTTTTGCGCATATTTTTCTTGAAAGAGC
ACACAATCGTCGTCACTCGCATACACGTCGGATAATTTGATGTAGTGTTT
CAGCACATTGGGGGTGCCTACATTCAACGTTGACGAATATTTTACAAGGA
TGAACTCGTATGCGGCCGAGAGGCCTACACATGTAACTCACGGATGGGCG
AAAAAGTTGTTGTGGCGGGAAGCATGTTTCATTCCAAAGCTCACCCAAGC
TTGGCGAAGATGAAATGATCTCGGGTATCACAGTGATAAGTCTGGACCGT
ACACCGGTCGTGGACATGACGCCAATGTAAAGCTACCCATAAGTCGACTA
ACTGGCCCGTGTGTGTCATGAAAAGATCCTATGTATTCCCGATGAAATAT
TCCTTTGAAAACAAAATGCAGGGCCTAGCAAATGCGGAACCTAAGAGGCG
GGAAGGAAATCGCCTCAGCATGATATTGTTCCCCAAGACGTTAGCTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig23459:212..1860+

>mRNA_H-paniculata_contig23459.6331.1 ID=mRNA_H-paniculata_contig23459.6331.1|Name=mRNA_H-paniculata_contig23459.6331.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig23459:212..1860+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGAGGTGAAGATGTCGTACAAGATTGAGCAGCACGACTACGGTGT
GCGAGTTAAAAATGTCAAGAAATTCGTCGCACAGGGCAATCGGATGAAGG
AGGTGAAGATGTCGTACAAGATTGAGCAGCACGACTACGGTGTGCGAGTT
AAAAATGTCAAGAAATTCGTCGCACAGGGCAATCGGGTGCGTGTTGTTGT
TCAATTCCGTGGGCGAGAGCAGTCGCACATGGACTTGGGGACAGTGCTGT
TGGACAAGGTCGTCAAGGACATGGATGTGCGTGTTGTTGTTCAATTCCGT
GGGCGAGAGCAGTCGCACATGGACTTGGGGACAGTGCTGTTGGACAAGGT
CGTCAAGGACATGGATGGCCTAGCAAATGCGGAACCTAAGAGGCGGGAAG
GAAATCGCCTCAGCATGATATTGTTCCCCAAGACGTTAGCTTAAGGCCTA
GCAAATGCGGAACCTAAGAGGCGGGAAGGAAATCGCCTCAGCATGATATT
GTTCCCCAAGACGTTAGCTTAA
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