mRNA_H-paniculata_contig2318.6240.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2318.6240.1
Unique NamemRNA_H-paniculata_contig2318.6240.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2318.6240.1 vs. uniprot
Match: D7FIJ0_ECTSI (Dynactin 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ0_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 4.110e-85
Identity = 130/176 (73.86%), Postives = 149/176 (84.66%), Query Frame = 1 
Query:  133 FVHTHTGDLVSRKAQVHGSQNLYLKGKTIIMRDAIIRGELQAIRIGRYCVIGEGTVIRPAYRVEPDGSHLKCRFTPLSVGNHTFIGKNCVVESAGIGCNVRIDDGCVLGRNSFVRDNCRLLAGCVLPEGVVVPPFTVLGGCPARVVSVLHESTATTWMEDAIAFYENFDPEAPSSP 660
            +V T  GD+V +KA VHG  NL+L G++IIM   IIRGELQ IRIGRYCV+GEGTVIRPAYR+E + S+LKCRFTPLSVG+HT+IGK+CVVESAGIGCNVRI+DGCVLGRNSFVRDNC LL G VLPEG VVPPFTVL GCPAR+VSVLHEST + W EDA+ FYE F+P A  +P
Sbjct:    9 YVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYRIEQEESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVWTEDAVNFYETFEPSAVVTP 184
[Close]
BLAST of mRNA_H-paniculata_contig2318.6240.1 vs. uniprot
Match: A0A7S1ZJQ9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJQ9_TRICV)

HSP 1 Score: 152 bits (383), Expect = 2.020e-38
Identity = 72/172 (41.86%), Postives = 112/172 (65.12%), Query Frame = 1 
Query:  133 FVHTHTGDLVSRKAQVHGSQNLYLKGKTIIMRDAIIRGELQA-IRIGRYCVIGEGTVIRPAYRVEPDGSHLKCRFTPLSVGNHTFIGKNCVVESAGIGCNVRIDDGCVLGRNSFVRDNCRLLAGCVLPEGVVVPPFTVLGGCPARVVSVLHESTATTWMEDAIAFYENFDPE 645
            ++ T   + VSR A +HGS+++ ++GK+++   A++RG+L A +R+GRYC +G+ +V+RP     PDG+    R  P S+GNHT IG++CVVE+A +G +V + DGCVLG+ S ++D CR+  G VL    VVPPF+++ G P RVV  + ES A    + ++  Y  F  E
Sbjct:   21 YIKTAANNYVSRSASIHGSRHVEIRGKSVVRPGAVVRGDLGAPVRVGRYCRVGDRSVLRPPSASLPDGTE---RRLPQSIGNHTSIGRDCVVEAAAVGFSVLVGDGCVLGKRSVIKDCCRIEPGTVLAPDAVVPPFSIVSGSPGRVVGEMPESAAAEIPDRSLGEYAAFVKE 189
[Close]
BLAST of mRNA_H-paniculata_contig2318.6240.1 vs. uniprot
Match: A0A0N4UAM7_DRAME (Uncharacterized protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4UAM7_DRAME)

HSP 1 Score: 149 bits (377), Expect = 9.400e-38
Identity = 67/168 (39.88%), Postives = 109/168 (64.88%), Query Frame = 1 
Query:  133 FVHTHTGDLVSRKAQVHGSQNLYLKGKTIIMRDAIIRGELQAIRIGRYCVIGEGTVIRPAYRVEPDGSHLKCRFTPLSVGNHTFIGKNCVVESAGIGCNVRIDDGCVLGRNSFVRDNCRLLAGCVLPEGVVVPPFTVLGGCPARVVSVLHESTATTWMEDAIAFYENF 636
            FV T TG+ V++K+++ GSQN+ L GK+I+M+D I+RG++ +IR G+YCV+GE TVIRP+Y+    G      F P+ +G+H FI  +C++ +A IG  V I  G ++GR+  ++D  ++L    +P   V+PPF+++ G P  ++  L EST     +   +FY+NF
Sbjct:   13 FVETATGNKVNKKSRLFGSQNIVLNGKSILMKDCILRGDMNSIRAGKYCVVGERTVIRPSYKRFSKG----LTFFPVHIGDHVFIENDCIIMAAQIGAFVHIGSGAIVGRSVIIKDCVQVLPNAFVPHDAVIPPFSIVSGNPGTIIGELPESTQNLMTQATRSFYDNF 176
[Close]
BLAST of mRNA_H-paniculata_contig2318.6240.1 vs. uniprot
Match: A0A0L0DIQ2_THETB (Dynactin subunit 5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DIQ2_THETB)

HSP 1 Score: 147 bits (371), Expect = 5.220e-37
Identity = 70/170 (41.18%), Postives = 112/170 (65.88%), Query Frame = 1 
Query:  133 FVHTHTGDLVSRKAQVHGSQNLYLKGKTIIMRDAIIRGELQAIRIGRYCVIGEGTVIRPAYRVEPDGSHLKCRFTPLSVGNHTFIGKNCVVESAGIGCNVRIDDGCVLGRNSFVRDNCRLLAGCVLPEGVVVPPFTVLGGCPARVVSVLHESTATTWMEDAIAFYENFDP 642
            ++ T +G+ VSR + + GSQN+ L GK++++  +IIRG+L A+RIGRYCVI +  V+RPAY+  P G +    +  LS+G+  ++GK+ VVE+A IG +V I +G ++ + + + D C +L G V+PE  V+PPF++ GG PA ++  L E+      E A A YE++ P
Sbjct:   11 WIETASGNKVSRASVLCGSQNIILNGKSLVLPGSIIRGDLAAVRIGRYCVISDRVVLRPAYKALPKGLN----YFQLSLGDCVYVGKDAVVEAASIGSHVIIGEGAIVSKRAVILDCCEILPGAVVPEDAVIPPFSIYGGNPAVLIGELTEAAQRVHEEKAFACYESYVP 176
[Close]
BLAST of mRNA_H-paniculata_contig2318.6240.1 vs. uniprot
Match: A0A7S2V2Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Q0_9STRA)

HSP 1 Score: 144 bits (364), Expect = 4.080e-36
Identity = 72/176 (40.91%), Postives = 106/176 (60.23%), Query Frame = 1 
Query:  121 KMNTFVHTHTGDLVSRKAQVHGSQNLYLKGKTIIMRDAIIRGELQAIRIGRYCVIGEGTVIRPAYRVEPDGSHLKCRFTPLSVGNHTFIGKNCVVESAGIGCNVRIDDGCVLGRNSFVRDNCRLLAGCVLPEGVVVPPFTVLGGCPARVVSVLHESTATTWMEDAIAFYENFDPEA 648
            K   F+ T T +LVS+K ++     + + GKTI+M   IIRG+L  + +GRYC +G  T+IRPA ++  + +     F  + +G++T IG++C++E+A IG NV+     VLG+ S VRD CRL  G VL  G VVPPF+V+ GCP RV S L E++   +   A   Y+ F   A
Sbjct:    8 KKEEFIRTTTNNLVSKKVRISSPNFVKITGKTILMHGVIIRGDLAKVEMGRYCEVGANTIIRPALKISEEPT-----FADVKIGDNTRIGEDCIIEAAWIGTNVQXXXXXVLGKGSLVRDCCRLEDGTVLAPGAVVPPFSVVAGCPGRVTSELPENSPEEFSHAAQDSYKKFKETA 178
[Close]
BLAST of mRNA_H-paniculata_contig2318.6240.1 vs. uniprot
Match: A0A7S3QBQ9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBQ9_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.610e-35
Identity = 71/184 (38.59%), Postives = 112/184 (60.87%), Query Frame = 1 
Query:  133 FVHTHTGDLVSRKAQVHGSQNLYLKGKTIIMRDAIIRGELQAIRIGRYCVIGEGTVIRP-AYRVEPDGSHLKC-------------RFTPLSVGNHTFIGKNCVVESAGIGCNVRIDDGCVLGRNSFVRDNCRLLAGCVLPEGVVVPPFTVLGGCPARVVS--VLHESTATTWMEDAIAFYENF 636
            +V T   + VSRKA +HG++N+ +KGK+I+     IRG+ Q +RIGRYC IGEG+++RP +Y+   D SH                +F PL VG+HT IGK CV+E+A +G +V I D CV+ +   ++D C + +G V+ +  V+PPF+ + GCP  ++   ++ ES  TT ++D +  +  F
Sbjct:   47 YVKTAAYNYVSRKAFIHGAKNVEMKGKSIVHPKVHIRGDFQTVRIGRYCHIGEGSILRPPSYQASLDTSHEGASENGENEEEKQLIKFLPLIVGSHTQIGKGCVIEAAAVGSSVYIGDNCVISKRVIIKDCCYIASGTVIAQDTVIPPFSRVAGCPGGMIENGLMAESITTTSVDDCVEQFNEF 230
[Close]
BLAST of mRNA_H-paniculata_contig2318.6240.1 vs. uniprot
Match: A0A0N4UWP5_ENTVE (Uncharacterized protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4UWP5_ENTVE)

HSP 1 Score: 142 bits (358), Expect = 3.140e-35
Identity = 71/172 (41.28%), Postives = 110/172 (63.95%), Query Frame = 1 
Query:  130 TFVHTHTGDLVSRKA-QVHGSQNLYLKGKTIIMRDAIIRGELQAIRIGRYCVIGEGTVIRPAYRVEPDGSHLKCRFTPLSVGNHTFIGKNCVVESAGIGCNVRIDDGCVLGRNSFVRDNCRLLAGCVLPEGVVVPPFTVLGGCPARVVSVLHESTATTWMEDAIAFYENFDP 642
            T V T TG+ VSR+   + GS N+ L GK+IIM   I+RG+L ++RIG+YCVIGE ++IRP+++    G      + P+ +G++ FI  +CVV +A IG  V I    ++GR++ ++D  ++L   V+P+  V+PPF+++GG PA +V  L  ST    M+   +FYENF P
Sbjct:   12 TVVETATGNKVSRRGTHLFGSTNIVLSGKSIIMDGCILRGDLNSVRIGKYCVIGERSIIRPSFKAFSKG----LTYFPVHIGDYVFIENDCVVMAAQIGSFVHIGSNAIIGRSTVLKDCVQILPDAVIPQDAVIPPFSIVGGNPAVIVGELPPSTQDLMMQANKSFYENFVP 179
[Close]
BLAST of mRNA_H-paniculata_contig2318.6240.1 vs. uniprot
Match: A0A0K0JQM9_BRUMA (BMA-DNC-5 n=14 Tax=Spiruromorpha TaxID=2072716 RepID=A0A0K0JQM9_BRUMA)

HSP 1 Score: 142 bits (357), Expect = 4.160e-35
Identity = 68/175 (38.86%), Postives = 107/175 (61.14%), Query Frame = 1 
Query:  133 FVHTHTGDLVSRKAQVHGSQNLYLKGKTIIMRDAIIRGELQAIRIGRYCVIGEGTVIRPAYRVEPDGSHLKCRFTPLSVGNHTFIGKNCVVESAGIGCNVRIDDGCVLGRNSFVRDNCRLLAGCVLPEGVVVPPFTVLGGCPARVVSVLHESTATTWMEDAIAFYENFDPEAPSS 657
            +V T TG+ V+RK+++ GSQN+ L GK+ +M+D I+RG++  IR GRYCV+GE T+IRP+Y+    G      F P+ +G+H FIG +C+V +A IG  V          +  ++   ++L   V+P   V+PPF+++GG P  V+  L EST     +    FY+NF P++ +S
Sbjct:    9 YVETATGNKVNRKSRLFGSQNIVLNGKSTLMKDCILRGDMHNIRTGRYCVVGERTIIRPSYKRFSKG----LTFFPVHIGDHVFIGNDCIVMAAEIGAFVHXXXXXXXXXSVIIKSCVQVLPNTVVPHDAVIPPFSIVGGNPGTVIGHLPESTQELMTQATRNFYDNFVPDSKNS 179
[Close]
BLAST of mRNA_H-paniculata_contig2318.6240.1 vs. uniprot
Match: H3H1L9_PHYRM (Uncharacterized protein n=28 Tax=Peronosporaceae TaxID=4777 RepID=H3H1L9_PHYRM)

HSP 1 Score: 138 bits (348), Expect = 7.190e-34
Identity = 63/171 (36.84%), Postives = 106/171 (61.99%), Query Frame = 1 
Query:  130 TFVHTHTGDLVSRKAQVHGSQNLYLKGKTIIMRDAIIRGELQAIRIGRYCVIGEGTVIRPAYRVEPDGSHLKCRFTPLSVGNHTFIGKNCVVESAGIGCNVRIDDGCVLGRNSFVRDNCRLLAGCVLPEGVVVPPFTVLGGCPARVVSVLHESTATTWMEDAIAFYENFDP 642
            T++HT TG+ +SRK  + G+ N++L+GKTI+   AI+R +L  + +G+ C+I E  V++P  RV   G      F P+ VG++ +IG++ VVE+A IG  V+I   CV+G+ + +RD CR+    V+P   V+PPF+ +GG P +++  + E+T          +++NF P
Sbjct:   16 TYIHTSTGNKISRKCTLCGAHNIHLRGKTIVDSGAIVRADLAKVSLGKQCIIREKCVVKPPTRVVSTG----LAFIPVKVGDYVYIGEDTVVEAAMIGSYVQIXKNCVIGKRAIIRDCCRIEDNTVVPADAVIPPFSRIGGIPGKLIEDMPEATQELCTGQISRYFDNFTP 182
[Close]
BLAST of mRNA_H-paniculata_contig2318.6240.1 vs. uniprot
Match: L8GIW5_ACACA (Dynactin 4 isoform 2, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIW5_ACACA)

HSP 1 Score: 137 bits (346), Expect = 2.320e-33
Identity = 76/185 (41.08%), Postives = 110/185 (59.46%), Query Frame = 1 
Query:  133 FVHTHTGDLVSRKAQVHGSQNLYLKGKTIIMRDAIIRGELQAIRIGRYCVIGEGTVIRPAYRVEPDGSHLKCRFTPLSVGNHTFIGKNCVVESAGIGCNVRIDDGCVLGRNSFVRDNCRLLAGCVLPEGVVVPPFTVLGGCPARVVSVLHESTATTWMEDAIAFYENFDPE-----APSSP*ASP 672
            F+ THTG+ V RK+ + GSQN+ L GKT++M  A+IRG+L A+ +G+Y VIG   VIRPA++    GS     F P+++G+   I ++C+V +  IG  V +  G VLGR+S ++D C +  G VL  G VVPPFT+ GG PA     L E       E ++  Y  F P+     AP++  A+P
Sbjct:   17 FIETHTGNKVGRKSILCGSQNIRLHGKTVVMPGAMIRGDLGAVNVGKYSVIGRNVVIRPAHK-RYQGS---VAFFPVTIGDFVHIEEDCIVSATSIGSYVHVGRGAVLGRHSVLKDCCWVEEGSVLAPGTVVPPFTIFGGSPAVQKGQLPECFQEMQKEASLINYNTFLPQPDVVAAPATTIATP 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2318.6240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIJ0_ECTSI4.110e-8573.86Dynactin 4 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S1ZJQ9_TRICV2.020e-3841.86Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A0N4UAM7_DRAME9.400e-3839.88Uncharacterized protein n=1 Tax=Dracunculus medine... [more]
A0A0L0DIQ2_THETB5.220e-3741.18Dynactin subunit 5 n=1 Tax=Thecamonas trahens ATCC... [more]
A0A7S2V2Q0_9STRA4.080e-3640.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3QBQ9_9STRA1.610e-3538.59Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A0N4UWP5_ENTVE3.140e-3541.28Uncharacterized protein n=1 Tax=Enterobius vermicu... [more]
A0A0K0JQM9_BRUMA4.160e-3538.86BMA-DNC-5 n=14 Tax=Spiruromorpha TaxID=2072716 Rep... [more]
H3H1L9_PHYRM7.190e-3436.84Uncharacterized protein n=28 Tax=Peronosporaceae T... [more]
L8GIW5_ACACA2.320e-3341.08Dynactin 4 isoform 2, putative n=1 Tax=Acanthamoeb... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2318contigH-paniculata_contig2318:13927..21710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.3
Seed ortholog evalue5e-72
Seed eggNOG ortholog2880.D7FIJ0
Preferred nameDCTN5
KEGG koko:K10427
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001568,GO:0001944,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003205,GO:0003231,GO:0003279,GO:0003281,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005869,GO:0005875,GO:0005886,GO:0006810,GO:0006888,GO:0006928,GO:0007017,GO:0007018,GO:0007275,GO:0007276,GO:0007283,GO:0007507,GO:0008088,GO:0008090,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0015629,GO:0015630,GO:0016020,GO:0016192,GO:0019882,GO:0019884,GO:0019886,GO:0019953,GO:0022414,GO:0030705,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0035904,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048002,GO:0048193,GO:0048232,GO:0048513,GO:0048609,GO:0048731,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0060840,GO:0060976,GO:0070013,GO:0071944,GO:0072358,GO:0072359,GO:0098930,GO:0099111
EggNOG free text desc.aorta development
EggNOG OGsKOG3121@1,KOG3121@2759
Ec32 ortholog descriptionTrimeric LpxA-like
Ec32 orthologEc-28_000450.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Exons5
Model size2616
Cds size540
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929654.7881236-UTR-H-paniculata_contig2318:13926..140491622929654.7881236-UTR-H-paniculata_contig2318:13926..14049Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2318 13927..14049 +
1691480953.2148387-UTR-H-paniculata_contig2318:13926..140491691480953.2148387-UTR-H-paniculata_contig2318:13926..14049Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2318 13927..14049 +
1622929654.9342172-UTR-H-paniculata_contig2318:19757..217101622929654.9342172-UTR-H-paniculata_contig2318:19757..21710Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2318 19758..21710 +
1691480953.27133-UTR-H-paniculata_contig2318:19757..217101691480953.27133-UTR-H-paniculata_contig2318:19757..21710Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2318 19758..21710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929654.8187597-CDS-H-paniculata_contig2318:14049..141391622929654.8187597-CDS-H-paniculata_contig2318:14049..14139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2318 14050..14139 +
1691480953.2245388-CDS-H-paniculata_contig2318:14049..141391691480953.2245388-CDS-H-paniculata_contig2318:14049..14139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2318 14050..14139 +
1622929654.834999-CDS-H-paniculata_contig2318:17532..176361622929654.834999-CDS-H-paniculata_contig2318:17532..17636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2318 17533..17636 +
1691480953.2317805-CDS-H-paniculata_contig2318:17532..176361691480953.2317805-CDS-H-paniculata_contig2318:17532..17636Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2318 17533..17636 +
1622929654.8518693-CDS-H-paniculata_contig2318:18013..181521622929654.8518693-CDS-H-paniculata_contig2318:18013..18152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2318 18014..18152 +
1691480953.2390935-CDS-H-paniculata_contig2318:18013..181521691480953.2390935-CDS-H-paniculata_contig2318:18013..18152Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2318 18014..18152 +
1622929654.864858-CDS-H-paniculata_contig2318:19233..193201622929654.864858-CDS-H-paniculata_contig2318:19233..19320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2318 19234..19320 +
1691480953.2466009-CDS-H-paniculata_contig2318:19233..193201691480953.2466009-CDS-H-paniculata_contig2318:19233..19320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2318 19234..19320 +
1622929654.915849-CDS-H-paniculata_contig2318:19637..197571622929654.915849-CDS-H-paniculata_contig2318:19637..19757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2318 19638..19757 +
1691480953.2542043-CDS-H-paniculata_contig2318:19637..197571691480953.2542043-CDS-H-paniculata_contig2318:19637..19757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2318 19638..19757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2318.6240.1prot_H-paniculata_contig2318.6240.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2318 14050..19757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2318.6240.1

>prot_H-paniculata_contig2318.6240.1 ID=prot_H-paniculata_contig2318.6240.1|Name=mRNA_H-paniculata_contig2318.6240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
MNTFVHTHTGDLVSRKAQVHGSQNLYLKGKTIIMRDAIIRGELQAIRIGR
YCVIGEGTVIRPAYRVEPDGSHLKCRFTPLSVGNHTFIGKNCVVESAGIG
CNVRIDDGCVLGRNSFVRDNCRLLAGCVLPEGVVVPPFTVLGGCPARVVS
VLHESTATTWMEDAIAFYENFDPEAPSSP*
back to top

mRNA from alignment at H-paniculata_contig2318:13927..21710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2318.6240.1 ID=mRNA_H-paniculata_contig2318.6240.1|Name=mRNA_H-paniculata_contig2318.6240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7784bp|location=Sequence derived from alignment at H-paniculata_contig2318:13927..21710+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATATATGGAGAACACCCCTGGACAAAATGGAGCATCTGGGAGGTGGATG
ATCTCTACAGTTGAACCACCACCACTTTATCAAGGCAAGATCCCTGAGAA
GTTGGGATCGATCTCCTGAAAAGATGAATACGTTCGTGCATACCCACACG
GGAGATCTGGTCAGTCGAAAAGCTCAGGTCCACGGCTCGCAAAACCTCTA
CCTCAAGGGCAAGGTGCGAAAAACTCAAAGGAGATAGGACAGAGAGACAG
AGGGACCAAGAGACAGTTATGTACTTGATGATTGTCTGTAGTGTCTGTAC
GCTACTGCTACTTCCTGTAACTGTCCGCCTTTCTATTTTCCCTCCTCTGT
CAACGCGACGCAATCGTGATGTAGGTCCTGTGGTTGGTAGAAAGCGAGGG
GACGTGGGTCTAAGGGGGCGGAGGTATCTTTGGGTTTGCATCATGACATG
CTCAATATGGCCATCATCAATGAGGCATCAATGAGGCCACAAGCCTAAAA
GGCCAACACTCCTTTTTATGATATTACAAGTCCAATATCATGTCATCAAT
TTTGGTCTCTCCTGTTACTGTAGCGACCGACGAAACGTGACCTTTACACC
GCTACTGCTATCTAATCTGCTCTGCAACATCAGGTTTGATTCATGTCTAC
TAACCGATGATGGATACGGTTGATACATGGCATATGAATAGTCGATTGCT
TCCCATCAGTCGCCACTCTCCTCCTGCGTACAAGATATCGCGTCTGCGTC
TTCGTGTCAACGGGAAGGCGTCGTTTCCTTTGACCTCTTGGAACTTGACA
AATTTCCTGATAGTCAGCACAACCAACACCGCGGCACATCTTATAGTACT
CGGAGAGATCTTACCAAAAGTCTCAAAACCCGTAATCGTATGCCTACAAT
CACACAGAGTTGACACGCTGACATATTGATCATAACTTTCCATACAAGAG
ATTTGATTACGCTACGGTGGACAATCGTACGTTACAAGAGAGCCTGCCTG
ATAGACAGGTGACACCGCTGCTGCAACGTGGCTGGCCCCGGCACAGGCCG
CTCTCCTGTTCCTACATAGCACTCTTTTTAGTCCACCCCAAATTATGAAT
TACTGTTCCGTTCTTGTGCGCATGCTTGCAACCATGCGGATTTTCCCTGT
GATACACTACTCCTTGACTCACTCAGCTGACCCTTGATTATGTATTGAAT
TCAATAGAGACGGGAGAGGTGTCGGCCCCTTGGTCCTCTCCTTTATTGAT
TCAGTGTCTCTAGGGTTCGCGTCTTTAGGCACCACCTTTATCGAATATCG
TATCGTAGACCCGCTTCGAGTTAAGTCAAAGGGTAATTGATGGAAGCTGA
CATTTTTACCTTGTACCAGAGTTGACGAAGCCAAATGCTCATCATTTTGT
GTGATCAAAGCGCGGGTGCCGCTCTGCAAGTACACATTCCCCACGCACAT
ACAGGCAGAGCGGGGGAGCACAGTTATGATTGATAAGTTCTAAGTAGATC
TCGTTTTCTCTCGGACCCTTCAAGAAAGCACAGCAGGCGAATAAACAGAA
ATCGAAAACAAAAGCGTGTCCGTTCTCGCTTTTTGCATGCTCTTTTCAGC
TCTGAGGGTGGCCCTAGCCGCCCAAAAACACTAATCCGTCATGGTTGTCC
GCACCTCTTCCGTTGAAACGGCTCTCCATAATCAAGAAAAACCAGACCAC
ATGAAAATTCTGGTCGTGTTGATATCAATTAAATTTACGGCGTAGTTGGT
GGGTAGGTCATATTATACTATACTATATACTACAATCTGCAGCATGCGAA
TGTATTCCAATCCACACCTCGCGAATGTGACAAGATTTTTGATATCAAGA
GACCGCACATATAATAGAAATGACAAAACAAGATTTGATCATGAGTGAAA
CAAGAGAAAGAGATATCTGTCGGTCGACCTCAATCAAGCACATGCCATGT
GCTGCACTCAGTCCAGGCGCTGTGCAGTAGCACGTGGACAGACCGGACTC
CAACCGACCGCTGGCTTCCACTTCCACAGCAGAAAAATAAAATCTGAACA
ACAAACAACAACCTGACAACGATCGATAAGAAAGAAAAATACCCAGTCCA
AACTGGTTCAAATGTTCACCGCAAGAGCCAGTCACGCTGCCTCCAAAACT
ATGGTTGATTAACCGAACGGCAATTATTGGTCAACAATGTACATACGATG
TCCTTGACTTGGGTTGAGTGAGTTGAGAAGTTAGAGAAAAATTGCGTGTG
GGTGGACAGTAACAGACAGCAACAGACAGCACCAGACAGCACGAAACGTA
GCTACCTTCATGATTGTGGGGGAAAGTGCACTCAAATCGTCATGGCGGTC
ACTGTAACGTTTCCAATATTGAAAATGGCACTGCATCAACGCATCCCATG
TTCTCGTAGACTGCAGTCATGTATTGAGGGACCAGGCGTCTGCTGGGAGT
ATCCGTACGTGGTGTTGTGCGAGATGGAAGCCCAGGCACTCGTTTCACGA
CGCACACATGTCGTATCCATAAGCACGTACGACGTGGTAATGGAGAACGC
TGCGCCAACCGTTTCTTCGCTTTAACTCAACTTTCTCTTCTCGGGGATTC
GTTCATTCTCGTGAGGCAATATCTTATCGAGGCACGCGATAATGAAATCT
TCGTTTTCAAGACAAGATTTTTTTCTTTCGAATATCCATCTATTGCTTCG
AGTATTATCGAGCACACCGTTCCAAAGGGTTCGTCGACGAGGGTGCAACA
TTGACTGTAGTTGGGAAACATCACAACCGCAGATGGTCCAAGGACAGCAC
ACAGAGAGAGAGAGTATACGCGCACTAGCTGAATACTCCATGTTGTGTTT
GGCGCGAATCCGTTCTGTGTTCGGGAGCTGCAGCACATCAAGTCCATTTG
CAGTTGCAGTGCCGTTTTTGCCTCTTTGTCCGTGCTGTCTTACCCCCGTG
CACACGATGAACATCTAATCTCCTCCTTCATATCTATTAATAGGACGATT
CTACTAAAACCAACAACAGCACATGATGCTCGCTTGATCGACAGCTGCAG
CCCGATATACGTTTTGTTGTTTCGGGGATAGTGAAGCTCTCACTCTTACC
ACGGGCAGTGCTGCATTTCTCTCTCACCCATTTGCAATACACGGCCGTGT
GTTGCCACGTTGGGGTCTTCTTTTTCAAGTGTTCTAATTACACGCATATT
CGTTCTCATTTTGCTGTCCACAAATGACCACTTCGTTTTGTAAAAGGTCC
TGAGGACTTTGAAAAAACGCGGTGGAATGCACGATACTGTAACTTCAACA
CTAAATATATATATTAATTACAGTGCGTGCTAGAATGGAGCAAGGACGTG
ACTTTCGAACGGAAACCTCTATGCGGGCTTGCTCTTTGCAACGGAGTGCG
AAAGCGCGACTTTCTTCTGTACAGTACCCCGTTTTTAATATCTCAATTCA
CGATTTCAAAGTGTGGCGTTCAAAGTTACAGTACCTCCCTACCTTACTGT
GGGGCTACAGATCGTTCTTGCATTCCTGGCATCTTTGGTAATTGCTTCGT
TTTTTTTTCCTTCGTCGGCATTGACCCATCTTTTACTACGTATTTTACAA
CTACAGACGATTATCATGCGGGATGCTATTATCCGCGGAGAGCTCCAGGC
TATCCGTATAGGACGTTACTGCGTCATTGGCGAGGGCACCGTCATACGGC
CTGCATACAGGTGGGCATCTTGGGGACCTCTGAATTGACGATGGAATTGC
TTTGTTGGCAACATTATACCTGGTATGCCTTCTCAGCGGCGTGTAATGTT
TTGGGGGGGTATTCTTGAGACTGGTTCATGTCCACATAAACATCTATCCG
TAGCACCAAGGTCATGTCTTTTCGCGACCTCTTTGCCTTTTGTGCCAATT
TGTGACCTCGCCTATGTAAGGCACGGCGAGTTGCTGCGGACTCAACGAGA
TTAGCAAAATTCTTGATCGTACGTTGTAAGGTGCAATTCCTTCCTGACAA
TGAATGAATGAATAAATGATGTACTTGCTGACGAAGATAAAATCGGATGG
ACATTGACTGACACATTGACTATGTTGACCAATGCAGGGTGGAGCCGGAT
GGGTCACACCTCAAGTGTCGTTTCACGCCGTTGTCTGTGGGAAACCATAC
GTTCATCGGCAAGAATTGTGTGGTGGAGTCAGCAGGGATCGGGTGTAACG
TGCGGATTGATGATGGTTGTGTGTTGGTGAGTTGAGCTGTTGAAACTTAA
GTGTTGCTGTTGTGTTGGGCCTTCACATAGCGTTCGTTCCTTCGTTTCTT
GCAGCAAGCACGTTGAGCTGTTGATAGAATGTCACCAATCATCTCATCAC
AACTATGATTGAGGCTCCGTCACCTTGGAAACCCAACAGAAGAAGGTGGT
CTAGCGTGTGGACTTCGGGCTACAACACGATCCTGAGTTAATGATTGAAT
ACGTTCAAGTCGGTGGGTTTGCAAGAGGAGGCAAGCACCGCATGAACTCA
TGCGATTACTTTCACGCTAACACGGAGACACATTGTTAACAGGACCAAAT
CGTTACTCTACTGGGGAGCGAACGTCTGACCCCGTTCCATCGACTTAACT
TGTGGAATCGGTATGTGTGGAATCGTGTCAATCATGCGATATGCACCCGC
GTTTCGGTTATAGATTTAACCCCGTGATTGTCGAGGCACGTAAAGCTGAA
TTGGGCACAATAATCTTAGCGTCTTTTATGAGGGAGAAAAAGTCTGAACT
CGTCACACTGACCCAACACGCGGAACCGATATGTGTGGAACCATCTCACT
CATGCGGTGTGCACCCACGTGTAGGTTTTCGATTCAACCTCATGGTTAAT
TGTGGAGATACATCGAATTGAATGGGGGGGCATCGTGCGAAAGAGCAACA
ATTTGGTTCTATTAATAATAACAGTGAGCCTCCGTAGTATTTATTTCCCG
TCAAGTCACGCTGCCAGCTATCCGTCGCCCATTTACGGTTCAAAGTTGTT
ATGGTACTTGGCGATATGAGGAGTACTATTGCATTCCATCTCTTATCTCC
ATACAAGTATAAAGTAGCAGTGTAGTGTAGTCGTACGTTGGTTGCTGTTG
ACTATGCCTTTTGGCTTCAAGGTGTTGATAGCCTGTTCTAATATGCCGAA
GCACAACCGCTGGAGTACTCACCAGTTTGGTTCTCACGTGTCCCTCGGTC
GTTTGCTGCGTAAAGACATTTGCAACTGGAAGACTTGTACCATACATGCT
GCTGATATTTGGCTCACGACTTGGCTTGGTCCGCTCGCTGCTGTCTCGTC
TCCACAGGGTCGTAACAGTTTTGTGAGGGATAACTGTCGCCTTTTGGCCG
GGTGTGTGCTCCCGGAAGGAGTCGTCGTTCCTCCATTTACAGTTGTGAGT
GGCGAGTATATTTGAGGAGGCGCTTCTAGTTGTCGTCTATGTCAAAATCA
CTATTTGATTATCGAGAAGAGAAGAGGGTAGTGCACATAGAGACACATGA
GCAAGTCAGATCTATCTTGTACTTTTCGGTTCCCAGTCGTTCGTATTTAC
GCTGTATTCGTTGTCTGGATACAAGATTCCTGTCAAATGTGCTTGTTTTT
TGAAAGCTATGGATGTTGCTATTGACATTGAGTGTCGCCCAATTGTTGAC
ACTTTCGTCGCCTCGTCGCCTCCTTGTATCATACCATATATATATATATA
TATATCCTCAGCTTGGCGGATGCCCGGCCAGGGTAGTGTCGGTGTTACAC
GAGAGCACGGCGACAACTTGGATGGAAGATGCGATTGCCTTCTACGAAAA
TTTCGACCCGGAAGCTCCGTCCAGCCCGTAGGCCAGCCCGTAGGACTTCG
TTGGTTTGCGTGATAGAATATGGGGGCCACAGGAGTGCTTCCGCCTACAA
TAGAAATTATTTGAGAGTATACCCTGCACGGGTAGAAAGTCACTTAAAGT
AACATAGTATTCTATAGTATGTATGCGCCGAGGTCTTCTTGTGTACTTGA
AAAAGACGGTGCAGGTGATCCATTGCACGCAAGGGGACAGGGTTTGCATT
TCCGCTCCCCCCAGAAATTGTGCTCCGGCGCAATGGTTGCTATGAGCATG
GTCGGTAGTATTTGGTACGAGTACGTGGTATGTTGCGTTTGGGGCCCCCG
TCTTTGCCCACACAACATCGTATTTATATTTCCTCAAAGGCTACGAGCAA
AGCATGAATGAACAACCCTAGAGCGAGGGCAAATGGGTGTAGTTGCATTA
ACCCGCGCCAAAGCAGAGCAATTCAAGCGTGTCGTTTTTCGCCCTGACTA
CCACTGTTAGGTTGTTCCTCTGCTTGGTGTGAAATTGCACGCCGCCATCT
AGAAAACGTTGTTTTGTAACCTTGAGCCTCCACGTTACACCTTATACACA
GTACTGGCATCCCCGTGTCTTGTCGAATGGCTCCGCAATGGCGTTTGGTG
CACCACCCGATGTGTAGTGTATACGGAGGATCAAAATTATATCTATCGTT
TTACGCATAACAGAAGGTGACAGGCTAGGAATTGGACTGATGTCGTGTGT
GTGTCGAGCCGTGTCTAATCGGTTCTGTATAGCTCCAACAGCTTATCGGG
ATGTGTCGATGCTTGTGTCTGTATATTGTCCTATTATACGTGTTATATTT
TGCGGTAGTTGTGGTTGTGGCTATTTCTCGAAGATTGCCGTGCCCTAGAA
AGAGACGAGAGTATCGAGGATCAGATGGGAGTGGATGACCATCTGCATTA
GATCCATCAAAAGCAACCGGAAAAGTTCGGGCACGAGATTTCTCTTGAAA
GATTTCACCCTCCAGAAAAATACGAATACCTGGCATATTCGCGACGAAAA
TGAAAAAAATACTCGCCTGAGTTTTCATGAGCTCATGTAATCTATGTGCC
CCGGACCATCCACGACTGCTAATAGTACTCGTAAATCGAATAGACAGGGG
CGGGTACTTTAATCTATGTGTCCAGTCATTCTGAAACTCAGGCGAATAGT
TTTTTTTTCAAATTTGGTGAGGAATATGCCAAGTGTTTGTATTTGTCTGG
GGGGTGAAATATTTACGAAAATATGTATCAAAAGCAGGGCAAGTCTCTCT
CTTTCTCTCGTTTATTTATTTTTTCATGTTTTTCTCGTAGGCAAAAGAAG
TGACTAGTTTTCCACCACGAGGTTTCTTGGTTAAGGATACGATACTGCTT
GGTTCACGTTATTGCGGGTTATTTTTGCGCACAGATAGTGGGAATAATTT
TTGTTGTTTGCGTTTGAATGGACCATTAGAAATCTTGCGCAAGGGTAAAC
CTATAGTATATCTCTGTACGTAATCAAAGGTGGGATTTTCGGCATAGCAA
ATTGACTGGACGAAATTATCACGAAACACTAGAATACTTAATATTATTTT
GTTTTACGATAATTGCCGGTCAGTCTTTCTTGGTTTCTTTCACAAGAGTG
AGAGGAAGAGCATTTTCTTGTTTGACTCGCTTGGCTTTACAGCCTGCATG
GCATATCAAGCGACCAACAATCGGAGGTGCCCGATCTTCAATAGTAATTA
TTGACTTTACCCTTCACGATTACCCCCCAAATCGGCCGCGATAGTTTGAT
CTACTGGATGCGGTAGGCGAGGTGAGGTCGGATTAGACATGGGAGCTGCA
ATTACTTGGATATGACAGACACGGGTTCTCGTTTGATGCCGTTTCGGGAG
AACAATGTACCTACCAACGTACGCAACGCTGAGCTGGATGCCTGAGGCCT
TAAACAATAACATGTGAATATATACAGCTTCGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2318:13927..21710+

>mRNA_H-paniculata_contig2318.6240.1 ID=mRNA_H-paniculata_contig2318.6240.1|Name=mRNA_H-paniculata_contig2318.6240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig2318:13927..21710+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATACGTTCGTGCATACCCACACGGGAGATCTGGTCAGTCGAAAAGC
TCAGGTCCACGGCTCGCAAAACCTCTACCTCAAGGGCAAGATGAATACGT
TCGTGCATACCCACACGGGAGATCTGGTCAGTCGAAAAGCTCAGGTCCAC
GGCTCGCAAAACCTCTACCTCAAGGGCAAGACGATTATCATGCGGGATGC
TATTATCCGCGGAGAGCTCCAGGCTATCCGTATAGGACGTTACTGCGTCA
TTGGCGAGGGCACCGTCATACGGCCTGCATACAGACGATTATCATGCGGG
ATGCTATTATCCGCGGAGAGCTCCAGGCTATCCGTATAGGACGTTACTGC
GTCATTGGCGAGGGCACCGTCATACGGCCTGCATACAGGGTGGAGCCGGA
TGGGTCACACCTCAAGTGTCGTTTCACGCCGTTGTCTGTGGGAAACCATA
CGTTCATCGGCAAGAATTGTGTGGTGGAGTCAGCAGGGATCGGGTGTAAC
GTGCGGATTGATGATGGTTGTGTGTTGGGTGGAGCCGGATGGGTCACACC
TCAAGTGTCGTTTCACGCCGTTGTCTGTGGGAAACCATACGTTCATCGGC
AAGAATTGTGTGGTGGAGTCAGCAGGGATCGGGTGTAACGTGCGGATTGA
TGATGGTTGTGTGTTGGGTCGTAACAGTTTTGTGAGGGATAACTGTCGCC
TTTTGGCCGGGTGTGTGCTCCCGGAAGGAGTCGTCGTTCCTCCATTTACA
GTTGGTCGTAACAGTTTTGTGAGGGATAACTGTCGCCTTTTGGCCGGGTG
TGTGCTCCCGGAAGGAGTCGTCGTTCCTCCATTTACAGTTCTTGGCGGAT
GCCCGGCCAGGGTAGTGTCGGTGTTACACGAGAGCACGGCGACAACTTGG
ATGGAAGATGCGATTGCCTTCTACGAAAATTTCGACCCGGAAGCTCCGTC
CAGCCCGTAGCTTGGCGGATGCCCGGCCAGGGTAGTGTCGGTGTTACACG
AGAGCACGGCGACAACTTGGATGGAAGATGCGATTGCCTTCTACGAAAAT
TTCGACCCGGAAGCTCCGTCCAGCCCGTAG
back to top