mRNA_H-paniculata_contig23168.6238.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23168.6238.1
Unique NamemRNA_H-paniculata_contig23168.6238.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23168.6238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23168contigH-paniculata_contig23168:2726..3183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23168.6238.1prot_H-paniculata_contig23168.6238.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23168 2726..3060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929654.4360008-CDS-H-paniculata_contig23168:2725..28791622929654.4360008-CDS-H-paniculata_contig23168:2725..2879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23168 2726..2879 +
1691480953.078703-CDS-H-paniculata_contig23168:2725..28791691480953.078703-CDS-H-paniculata_contig23168:2725..2879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23168 2726..2879 +
1622929654.461573-CDS-H-paniculata_contig23168:2992..30601622929654.461573-CDS-H-paniculata_contig23168:2992..3060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23168 2993..3060 +
1691480953.087431-CDS-H-paniculata_contig23168:2992..30601691480953.087431-CDS-H-paniculata_contig23168:2992..3060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23168 2993..3060 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929654.4776237-UTR-H-paniculata_contig23168:3060..31831622929654.4776237-UTR-H-paniculata_contig23168:3060..3183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23168 3061..3183 +
1691480953.096162-UTR-H-paniculata_contig23168:3060..31831691480953.096162-UTR-H-paniculata_contig23168:3060..3183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23168 3061..3183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23168.6238.1

>prot_H-paniculata_contig23168.6238.1 ID=prot_H-paniculata_contig23168.6238.1|Name=mRNA_H-paniculata_contig23168.6238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
PQGVGWRACVLADPSRILGAYLSQSHVEHGVLQQRWVVEGCTGRSLPSCF
RLVNEKPIPGGGGDVDGAVVVES*
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mRNA from alignment at H-paniculata_contig23168:2726..3183+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23168.6238.1 ID=mRNA_H-paniculata_contig23168.6238.1|Name=mRNA_H-paniculata_contig23168.6238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig23168:2726..3183+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATGTTGTCGAACAGCTGGTTGTCAATAAAATGGTTAGACGCTCCGCTG
TCCGCTATCATGCAGAACTTGATTAATGAACTGGGAGTCGGCTTCGCGTA
GGTGTTGGATTCTTCAGTGGTGAACGAAAAACCGATACCGGGCGGTGGCG
GTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGAGTAGTCGAAGCACTG
AACGCAGTCGGAGTGTTGTACGTAGGAGGTACTGTAGTGGCGGCCGGGTC
GATGGCGGTGTTGGCTTGGTACGGGGGGCTGCTCTGTTGATGCTGTCCAT
GCTGAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig23168:2726..3183+

>mRNA_H-paniculata_contig23168.6238.1 ID=mRNA_H-paniculata_contig23168.6238.1|Name=mRNA_H-paniculata_contig23168.6238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig23168:2726..3183+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATCCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGC
GAATACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTG
CAGCAGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTG
CTTTCGATTGGTGAACGAAAAACCGATACCGGGCGGTGGCGGTGACGTGG
ATGGTGCGGTAGTTGTCGAAAGTTGATGGTGAACGAAAAACCGATACCGG
GCGGTGGCGGTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGA
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