mRNA_H-paniculata_contig2298.6156.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2298.6156.1
Unique NamemRNA_H-paniculata_contig2298.6156.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2298.6156.1 vs. uniprot
Match: D8LJ70_ECTSI (Similar to chromatin modifying protein 2B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ70_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 4.090e-92
Identity = 164/213 (77.00%), Postives = 189/213 (88.73%), Query Frame = 2 
Query:   53 MFPRKKVDPKEAAKTAKREVRRGERDIEKELRNLERSEKSLISDIKKTAKGGNQGATRTLAKQLVTLRHQKDQLYTARARIAGVGNQASSAATTAALAGVMGNVAGVMKKVNDNVSNEEMAKVMQQFAVENEKMGMTEEMMDDALIDAFDGEGVEAEADSVVDQVLAEIGLDVGGQMTDAPTHAPA-VARPSTADETKLDAKTEELLKQLEAL 688
            MF +KK DPK AAK AKR VR GERD++KE+RNL+RSEKSL+++IKKTAKGGNQGATRTLAKQLV LR QKDQLY+ARA++AGVGN A++AAT+A+LAGVMGNVAGVMKKVN+ VS EE AK+MQQFAVENEKM M+EEMMDDALIDAFDGEGVE EAD VV QVLAE+GL++ G+M DAPT+ PA VARPS A++ KLDAKTEELL QL AL
Sbjct:    1 MFHKKKPDPKAAAKDAKRAVRSGERDLDKEIRNLDRSEKSLVAEIKKTAKGGNQGATRTLAKQLVQLRAQKDQLYSARAKLAGVGNAATTAATSASLAGVMGNVAGVMKKVNEAVSTEETAKIMQQFAVENEKMNMSEEMMDDALIDAFDGEGVEEEADGVVGQVLAELGLEMDGKMVDAPTNTPAGVARPSEAEDAKLDAKTEELLAQLGAL 213
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BLAST of mRNA_H-paniculata_contig2298.6156.1 vs. uniprot
Match: A0A835YLS1_9STRA (Chromatin modifying protein-like protein 2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS1_9STRA)

HSP 1 Score: 223 bits (567), Expect = 9.260e-65
Identity = 127/208 (61.06%), Postives = 160/208 (76.92%), Query Frame = 2 
Query:   68 KVDPKEAAKTAKREVRRGERDIEKELRNLERSEKSLISDIKKTA-KGGNQGATRTLAKQLVTLRHQKDQLYTARARIAGVGNQASSAATTAALAGVMGNVAGVMKKVNDNVSNEEMAKVMQQFAVENEKMGMTEEMMDDALIDAFDGEGVEAEADSVVDQVLAEIGLDVGGQMTDAPTHAPAVARPSTADETKLDAKTEELLKQLEAL 688
            K DPKE A++AKR+VR+GERD+E+ELRNL+R EK LI DIKKTA K G + ATR LA QLV LR Q+D+LYT ++ I  VG Q ++ A  AA+AGVMG+V G MK VN  +S +EMA V+QQFA+++E MGM EE+MDDAL DAFDG+GVEAE D++VDQVL EIGLD+  +M DAPT  PA  +    D++ LD + EELLKQL+AL
Sbjct:    5 KPDPKEVARSAKRQVRQGERDVERELRNLDRVEKQLIIDIKKTARKPGGEKATRNLAGQLVGLRKQRDKLYTMKSTITAVGYQTTAIAGQAAMAGVMGSVTGAMKDVNAQLSPQEMAAVLQQFALQSETMGMREELMDDALTDAFDGDGVEAETDAIVDQVLTEIGLDMTSKMADAPTGKPAAGQQLAQDDSMLDQRAEELLKQLQAL 212
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BLAST of mRNA_H-paniculata_contig2298.6156.1 vs. uniprot
Match: A0A4D9D707_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D707_9STRA)

HSP 1 Score: 156 bits (395), Expect = 3.060e-40
Identity = 94/202 (46.53%), Postives = 132/202 (65.35%), Query Frame = 2 
Query:   53 MFPRKKVDPKEAAKTAKREVRRGERDIEKELRNLERSEKSLISDIKKTAKGGNQGATRTLAKQLVTLRHQKDQLYTARARIAGVGNQASSAATTAALAGVMGNVAGVMKKVNDNVSNEEMAKVMQQFAVENEKMGMTEEMMDDALIDAFDGEGVEAEADSVVDQVLAEIGLDVGGQMTDAPTHA--PAVARPSTADETKLDA 652
            MF +KK+ PKE  +  KRE+R  ERD+++EL+NL R E  LI DIKK A     G  + +AK LV LR QKD+L T +  + GVG +AS   + AA+   MG + GVM  +N+ +   + +KVM +FA +NE M + E+++DDAL+DAFDG+GVE EA+SVV+QVL EIGL++G +M D P       V + S  D+  L+A
Sbjct:    1 MFGQKKLTPKEQLRETKREIRHNERDMDRELQNLAREEAKLIHDIKKMAANNQHGPLKVMAKNLVQLRAQKDKLITMKTTMTGVGYKASLMHSQAAVGQAMGRMTGVMGDMNEMMDATKTSKVMTEFARQNEYMNVKEDLLDDALMDAFDGDGVEEEAESVVNQVLEEIGLELGSKMADVPVGKLRDGVDKESIEDKAALEA 202
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BLAST of mRNA_H-paniculata_contig2298.6156.1 vs. uniprot
Match: A0A024UK03_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UK03_9STRA)

HSP 1 Score: 144 bits (363), Expect = 9.150e-36
Identity = 84/181 (46.41%), Postives = 113/181 (62.43%), Query Frame = 2 
Query:   56 FPRKKVDPKEAAKTAKREVRRGERDIEKELRNLERSEKSLISDIKKTAKGGNQGATRTLAKQLVTLRHQKDQLYTARARIAGVGNQASSAATTAALAGVMGNVAGVMKKVNDNVSNEEMAKVMQQFAVENEKMGMTEEMMDDALIDAFDGEGVEAEADSVVDQVLAEIGLDVGGQMTDAPT 598
            F + +  P+E AK AKR + + +R++E+E   LER EK LI+DIKK AK GN G T+ LAKQL+ LR QKD++   ++ +  +G Q +S A    +   +      M   +  +      KV+  F  ++E MGM EEM+DD LIDAFD E VEAE D+VVDQVL EIGLD+G  M DAPT
Sbjct:    4 FGKPEKTPRERAKEAKRGIAQSQRELEREKMALERQEKQLIADIKKAAKEGNTGGTKILAKQLIQLRQQKDKMTMLKSNLGSIGLQTTSMAAQMTMVAAIEKTTKTMASTSKQMDMNRFQKVIMDFEKQSEMMGMREEMLDDTLIDAFDDEEVEAEGDAVVDQVLTEIGLDLGSLMADAPT 184
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BLAST of mRNA_H-paniculata_contig2298.6156.1 vs. uniprot
Match: A0A7S1BMU4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMU4_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.070e-33
Identity = 89/220 (40.45%), Postives = 137/220 (62.27%), Query Frame = 2 
Query:   53 MFPRKKVDP--KEAAKTAKREVRRGERDIEKELRNLERSEKSLISDIKKTAKGG----NQGATRTLAKQLVTLRHQKDQLYTARARIAGVGNQASSAATTAALAGVMGNVAGVMKKVNDNVSNEEMAKVMQQFAVENEKMGMTEEMMDDALIDAFDGEGVEAEADSVVDQVLAEIGLDVGGQMT--DAPTHAPAVARPSTADETKLDAKTEELLKQLEAL 688
            M P +K  P  KEAA+  KREVR  +R I++ELR LER E++L++DIKK AK G    N  A + L+KQLV  R QKD+L  ++++I  +  +A++ ++  A A  +G V   M   N  V  ++++  M +F  +NE M + E++ +DAL DAFDG+ VE EAD+V DQ+LAE+GL++ G+M   + P+ AP VA     ++  + +   +L  +L AL
Sbjct:    1 MLPWRKPKPTAKEAARETKREVRSAQRGIDRELRELERQERTLLADIKKRAKTGGITKNDSALKALSKQLVHTRGQKDRLQESKSQIGSMALKATAMSSQVAAAQAVGKVTQAMGNANQAVDIKKLSAQMGEFMRQNEMMDLKEDLFNDALADAFDGDEVEEEADAVTDQILAELGLELSGKMEGLNVPSAAPPVAEEEVVEDDGISSNIPDLQSRLNAL 220
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BLAST of mRNA_H-paniculata_contig2298.6156.1 vs. uniprot
Match: A0A067D5G0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D5G0_SAPPC)

HSP 1 Score: 135 bits (340), Expect = 1.120e-32
Identity = 87/187 (46.52%), Postives = 113/187 (60.43%), Query Frame = 2 
Query:   53 MFPRKKVDPK---EAAKTAKREVRRGERDIEKELRNLERSEKSLISDIKKTAKGGNQGATRTLAKQLVTLRHQKDQLYTARARIAGVGNQASSAATTAALAGVMGNVAGVMKKVNDNVSNEEMAKVMQQFAVENEKMGMTEEMMDDALIDAFDGEGVEAEADSVVDQVLAEIGLDVGGQMTDAPTHA 604
            MF   K  PK   E A+ AKRE+  G+RD+E+E   LER EK LI DIKK AK GNQ  T+ LAKQLV +R QK++L   +  + G+G QAS+ A    +   M      M   N  +    + K + +F  ++E M M +EMM+D LIDAFD +  E E D VVDQVLAEIGLD+  Q+ DAPT +
Sbjct:    1 MFGFGKAPPKTAREQAREAKREIAHGQRDLEREKMVLERQEKQLILDIKKAAKDGNQAGTKILAKQLVQVRAQKEKLMVMKVSLGGIGMQASAMAAQQTMVATMEKTTKTMVAANKQMDMSRIQKTLMEFEKQSELMSMGQEMMEDTLIDAFDDD--EVEEDLVVDQVLAEIGLDLHTQLADAPTQS 185
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BLAST of mRNA_H-paniculata_contig2298.6156.1 vs. uniprot
Match: A0A7S2EVL5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVL5_TRICV)

HSP 1 Score: 134 bits (338), Expect = 3.000e-32
Identity = 89/221 (40.27%), Postives = 135/221 (61.09%), Query Frame = 2 
Query:   56 FPRKKVDPKEAAKTAKR----EVRRGERDIEKELRNLERSEKSLISDIKKTAKG----GNQGATRTLAKQLVTLRHQKDQLYTARARIAGVGNQASSAATTAALAGVMGNVAGVMKKVNDNVSNEEMAKVMQQFAVENEKMGMTEEMMDDALIDAFDGEGVEAEADSVVDQVLAEIGLDVGGQMT--DAPTHAPAVARPSTADETKLDAKTEELLKQLEAL 688
            F  KK    EAAK AKR    EVR  +RD+++E+R L+R+E  ++++IKK AK     GN  A   LAKQLV +R QK+++++ +A +  VG QA++ A+  A A  +GNV   M   N ++    + K+M +F  +NE MG+ EE+MDDAL DAFD + VE EA++V +QVLAE+G+++  +M   DAP   P     +  ++  L     +L  +L+AL
Sbjct:    3 FWEKKPTAAEAAKAAKRSTKREVRGAQRDMDREIRELDRTEAQVLAEIKKRAKAPGVSGNDRALSALAKQLVQIRKQKEKMFSTKANLGAVGMQATAMASQVAAASAVGNVTKAMGTANASIDAAAVGKIMTEFQRQNEIMGVREELMDDALTDAFDADEVEEEAEAVTNQVLAELGVELDSKMVGLDAPKQKPVGEEMNAEEKEALYDALPDLRARLDAL 223
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BLAST of mRNA_H-paniculata_contig2298.6156.1 vs. uniprot
Match: A0A1V9YGJ3_9STRA (SNF7 family protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGJ3_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.050e-30
Identity = 79/181 (43.65%), Postives = 112/181 (61.88%), Query Frame = 2 
Query:   56 FPRKKVDPKEAAKTAKREVRRGERDIEKELRNLERSEKSLISDIKKTAKGGNQGATRTLAKQLVTLRHQKDQLYTARARIAGVGNQASSAATTAALAGVMGNVAGVMKKVNDNVSNEEMAKVMQQFAVENEKMGMTEEMMDDALIDAFDGEGVEAEADSVVDQVLAEIGLDVGGQMTDAPT 598
            F + +  P+E A+ AKRE+  G+RD+E+E   LER EK+L+ DIK+ AK GN   T+ LAKQLV +R QKD+L   +A + G+  QAS+ A    +   M      M   N  +    + K + +F  ++E M M EEM+DD LIDAF+ +  + E + VVDQVLAEIGLD+  Q+ +APT
Sbjct:    4 FGKPQKTPREQAREAKREIAHGQRDLEREKAALERQEKTLVLDIKRAAKDGNAAGTKILAKQLVQVRQQKDKLSVMKANLGGIAMQASTMAAQHVVMATMEKTTKTMVAANKQMDMGRIQKTLMEFEKQSEMMNMKEEMLDDTLIDAFEDD--DEEENLVVDQVLAEIGLDLHTQLGEAPT 182
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BLAST of mRNA_H-paniculata_contig2298.6156.1 vs. uniprot
Match: A0A7S4E9U6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E9U6_9STRA)

HSP 1 Score: 128 bits (321), Expect = 7.710e-30
Identity = 92/229 (40.17%), Postives = 135/229 (58.95%), Query Frame = 2 
Query:   11 YSLLSYLPW*AAANMFP---RKKVDPKEAAKTAKREVRRGERDIEKELRNLERSEKSLISDIKKTAKGGNQGATRTLAKQLVTLRHQKDQLYTARARIAGVGNQASSAATTAALAGVMGNVAGVMKKVNDNVSNEEMAKVMQQFAVENEKMGMTEEMMDDALIDAFDGEGVEAEADSVVDQVLAEIGLDVGGQMTDAPTHAPAVARPSTADETKLDAKTEELLKQLEAL 688
            YS L    W    + F    +K+   KEAAK  K+EVR  +R++++ELR+++R E  LI+DIKK A+ G + + R LA+ LV LR  +++L  AR  +  +  QAS+ A +  +A  +   + VM K+N +V    M+  +  F  E E+M MTEE M D L +AFD +  E EAD+VVDQVLAE+GL+    + DAPT A      + AD+T      ++LL+QL AL
Sbjct:   14 YSYLLARNWQCTMSNFSNPFKKQPTAKEAAKGVKKEVRSSQRELDRELRDIDRREAQLIADIKKQARDGRETSVRVLARNLVQLRSSRERLLKARGTVGSMSAQASAMAASITVADSLQKTSKVMNKMNASVQKSAMS--VAAFQKEAERMNMTEEAMGDMLSEAFDDD--EDEADAVVDQVLAEVGLNTTKDLHDAPTAALPEPEAAEADDT------DQLLRQLNAL 232
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BLAST of mRNA_H-paniculata_contig2298.6156.1 vs. uniprot
Match: A0A2A2L5Q1_9BILA (Uncharacterized protein n=3 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2L5Q1_9BILA)

HSP 1 Score: 127 bits (318), Expect = 1.030e-29
Identity = 83/208 (39.90%), Postives = 118/208 (56.73%), Query Frame = 2 
Query:   65 KKVDPKEAAKTAKREVRRGERDIEKELRNLERSEKSLISDIKKTAKGGNQGATRTLAKQLVTLRHQKDQLYTARARIAGVGNQASSAATTAALAGVMGNVAGVMKKVNDNVSNEEMAKVMQQFAVENEKMGMTEEMMDDALIDAFDGEGVEAEADSVVDQVLAEIGLDVGGQMTDAPTHAPAVARPSTADETKLDAKTEELLKQLEAL 688
            KK D KE  +   +E+R+  R+++ + R +ER EK L ++IKK AK G   A R+LA+QLV LR+QK +     ARI+G+G Q S+  +   +A  MG   GVMK +   +  +++AK M+ F ++ EK G+TEEMM+DAL    D  G EAE D +V QVL EIG++   Q+   P      A P           T +L  QLE L
Sbjct:    6 KKPDAKEMMRANNKEIRKTNRELDSDRRGMERREKELEAEIKKLAKQGQNDAARSLARQLVQLRNQKAKSVAMGARISGIGAQQSNMYSMGKMADAMGKTVGVMKTMEKQMPVDKLAKNMRDFQMQQEKFGLTEEMMNDALDSILDEPGDEAEQDRIVAQVLDEIGIETNSQLAKLP------AMPKNVGAESSSISTSDLESQLERL 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2298.6156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ70_ECTSI4.090e-9277.00Similar to chromatin modifying protein 2B n=2 Tax=... [more]
A0A835YLS1_9STRA9.260e-6561.06Chromatin modifying protein-like protein 2B n=1 Ta... [more]
A0A4D9D707_9STRA3.060e-4046.53Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A024UK03_9STRA9.150e-3646.41Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7S1BMU4_9STRA3.070e-3340.45Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A067D5G0_SAPPC1.120e-3246.52Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7S2EVL5_TRICV3.000e-3240.27Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1V9YGJ3_9STRA2.050e-3043.65SNF7 family protein n=1 Tax=Achlya hypogyna TaxID=... [more]
A0A7S4E9U6_9STRA7.710e-3040.17Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A2A2L5Q1_9BILA1.030e-2939.90Uncharacterized protein n=3 Tax=Diploscapter pachy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2298contigH-paniculata_contig2298:6822..14406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.7
Seed ortholog evalue4.2e-78
Seed eggNOG ortholog2880.D8LJ70
Preferred nameCHMP2B
KEGG koko:K12192
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000815,GO:0000819,GO:0000920,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0006810,GO:0006914,GO:0006996,GO:0006997,GO:0007032,GO:0007034,GO:0007041,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0019725,GO:0019904,GO:0022402,GO:0022411,GO:0022607,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032509,GO:0032510,GO:0032886,GO:0032984,GO:0032991,GO:0033043,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040012,GO:0040017,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044248,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0046605,GO:0046755,GO:0046907,GO:0048284,GO:0048285,GO:0048518,GO:0048524,GO:0050000,GO:0050789,GO:0050792,GO:0050794,GO:0050877,GO:0050890,GO:0051128,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060249,GO:0061024,GO:0061025,GO:0061763,GO:0061919,GO:0065007,GO:0065008,GO:0070050,GO:0070507,GO:0070925,GO:0071840,GO:0071985,GO:0090169,GO:0090174,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:1901673,GO:1902115,GO:1902186,GO:1902188,GO:1903047,GO:1903900,GO:1903902,GO:1904896,GO:1904903
EggNOG free text desc.vacuolar transport
EggNOG OGsCOG5491@1,KOG3231@2759
Ec32 ortholog descriptionSnf7 family protein
Ec32 orthologEc-02_004980.1
COG Functional cat.N
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Exons5
Model size2104
Cds size639
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.1634088-UTR-H-paniculata_contig2298:6821..82341622929643.1634088-UTR-H-paniculata_contig2298:6821..8234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2298 6822..8234 -
1691480948.2510595-UTR-H-paniculata_contig2298:6821..82341691480948.2510595-UTR-H-paniculata_contig2298:6821..8234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2298 6822..8234 -
1622929643.2506115-UTR-H-paniculata_contig2298:14354..144061622929643.2506115-UTR-H-paniculata_contig2298:14354..14406Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2298 14355..14406 -
1691480948.324019-UTR-H-paniculata_contig2298:14354..144061691480948.324019-UTR-H-paniculata_contig2298:14354..14406Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2298 14355..14406 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.1867208-CDS-H-paniculata_contig2298:8234..84291622929643.1867208-CDS-H-paniculata_contig2298:8234..8429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2298 8235..8429 -
1691480948.272568-CDS-H-paniculata_contig2298:8234..84291691480948.272568-CDS-H-paniculata_contig2298:8234..8429Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2298 8235..8429 -
1622929643.2004163-CDS-H-paniculata_contig2298:11178..113401622929643.2004163-CDS-H-paniculata_contig2298:11178..11340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2298 11179..11340 -
1691480948.2819443-CDS-H-paniculata_contig2298:11178..113401691480948.2819443-CDS-H-paniculata_contig2298:11178..11340Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2298 11179..11340 -
1622929643.2126777-CDS-H-paniculata_contig2298:12000..121201622929643.2126777-CDS-H-paniculata_contig2298:12000..12120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2298 12001..12120 -
1691480948.291654-CDS-H-paniculata_contig2298:12000..121201691480948.291654-CDS-H-paniculata_contig2298:12000..12120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2298 12001..12120 -
1622929643.22321-CDS-H-paniculata_contig2298:13428..135591622929643.22321-CDS-H-paniculata_contig2298:13428..13559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2298 13429..13559 -
1691480948.3038096-CDS-H-paniculata_contig2298:13428..135591691480948.3038096-CDS-H-paniculata_contig2298:13428..13559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2298 13429..13559 -
1622929643.235285-CDS-H-paniculata_contig2298:14323..143541622929643.235285-CDS-H-paniculata_contig2298:14323..14354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2298 14324..14354 -
1691480948.3153641-CDS-H-paniculata_contig2298:14323..143541691480948.3153641-CDS-H-paniculata_contig2298:14323..14354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2298 14324..14354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2298.6156.1prot_H-paniculata_contig2298.6156.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2298 8235..14354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2298.6156.1

>prot_H-paniculata_contig2298.6156.1 ID=prot_H-paniculata_contig2298.6156.1|Name=mRNA_H-paniculata_contig2298.6156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
MFPRKKVDPKEAAKTAKREVRRGERDIEKELRNLERSEKSLISDIKKTAK
GGNQGATRTLAKQLVTLRHQKDQLYTARARIAGVGNQASSAATTAALAGV
MGNVAGVMKKVNDNVSNEEMAKVMQQFAVENEKMGMTEEMMDDALIDAFD
GEGVEAEADSVVDQVLAEIGLDVGGQMTDAPTHAPAVARPSTADETKLDA
KTEELLKQLEAL*
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mRNA from alignment at H-paniculata_contig2298:6822..14406-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2298.6156.1 ID=mRNA_H-paniculata_contig2298.6156.1|Name=mRNA_H-paniculata_contig2298.6156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7585bp|location=Sequence derived from alignment at H-paniculata_contig2298:6822..14406- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAACACTCTACTCTCTTCTCAGCTATCTTCCGTGGTAGGCAGCAGCAA
ACATGTTTCCCCGAAAAAAGGTCGACCCTAAAGGTAAACTCTCCCGCAAT
TGCTCGTTGCCTTGGCACCCGGATGTTTAGTGCAAAAATACAAATTATTG
GTGTGCGTCGTAGCCCACAGAGAAATTCCGAATTTCCATGTTCTGTCTCT
GTGTTTGCAAGACAACCCGACGGAATTGGCATCTGCGTGCTGCGCGTTCG
CCTGTTACGTTACTACTGCCCATGTGGTGGCTGCGTGCTGTCGGGGAAGT
GGGTTGAAAGCCGTGAAGGAGGAAATTGTAAACCACATGTTTAGTTATGT
GTGTGCGAATACATAGTAAGTCTAATTAACTTCTGGTGTGGAGTAGGGGA
TTGACAGGACTACAGTATAATTCGAACCCGGCTGTTTTTGCGGAGTATTA
GGTGATACGTTCCCGATCACCGGACATCTGGACACACCTGTCCTCCCTCG
AACAACAGTCTACACTGCTGAACCGCCCCTGTTCAACTTTACTGTTGGCT
GACCGTTAGCTCTGTCAATATTCCTCTGTCGCCGCGTCGACCTCCCATTT
TTGTTGGATTGTTCAATTCTTCGGTGTGAATGAAACCTGAAATTGCCATG
AACTGGCATATCGTTTTACAAGCGGTTCATGTACACGGTTAACAACCAGC
GATAAGCGTCAAAGTTTTCAGGTCCCGCTTGTGTCCCGTGCACAACAAAT
GGGCAGCGTGCCCTAATTATGGCCTCTATCGTGCACTCTTGTGCCCTCAT
GCCCCTTATCTGCCTAACTCTTGCAATAAATGAATTAAAAAAAACAGAGG
CAGCGAAGACTGCCAAGAGGGAGGTACGGAGAGGAGAACGCGATATAGAG
AAGGAATTAAGAAACTTGGAACGATCCGAGAAGTCTTTGATTTCAGATAT
CAAGAAGACTGCTAAGGGCGGCAATCAGGTCAGCTCGCAAGGCAAATGGA
CTATTCGTGGTGCAGAGTCAAGTGAACAATTAACTCTATGCTAGGATGCT
GCGTGCATAGCGGTATCGGTATGTACTTTTTCTATACATGTTTTTCACGT
GTGGAGTACGTCGCGTGGTCGGCGTCGTGTCTTGAGTCTTTACCACGTCC
AATAACCGATAACTATCCTTTGACCCGCGCGCATCTCTCGAATGACTTTA
TGATGAAATAGTGGACATCTACTGTGGGGTCGATAGAAGAAGTGAAGACC
GCGATATAGGCGCTGGACGTTTGGGGTTAGTAGGATGGATTTCACAAATC
GCGGTGGTATGTGAACAGCTGAGGTCCCACAGAAATTTCTGATCATTTTC
CTAGGTTCCCAAACCCTTCAGAGATTATGTTCGTGTTTTGTAAGGGGTGG
TCACGATCCACGTTCTGGATCTCTGCATTTATCCTCCTCATTTTCGTTCT
CCATGTCGCAATCAGCCAAACTTGTGGATGTATCGCTATATAACGCCTCT
TAACTGCCTGGGCATGTTTACCCCGCCAGTCTGTTTGCGGTTTTGCGGGT
AACATAACATAGATCTCTCTACAATTAACGCGGAACATGCATGTCTCACA
TCACGGAATACTTGGCTAAGGGTAGAGCACTATTAAGGTCTCCTTCTTTC
GGCGTTGCGTCGTCATGTCTGTTGTATTCGAGGAAGGTGCTGCGACATTG
TTGTGCAGCCTTGTACCGTGAGCCATGTCATGAGTCGTAAATGATTCACA
CTGCAACTTTATTTCTGCTATCTAAAATTACATTTGTCTTGTCTTTTTCT
AGTGGTCTACGCCAAGATGGAGTAGATTCTTGGTGCCGGACTGAGTCAAT
TAGATCTGCATACCGAATTGAAATGATGCAATCATGGTGGATCTTTCCCC
TGACTCAAATCCCTCTCCGGCCCTTCATTCCGAACCCTCCGCCCCCCCCT
TTTTAGCTTCTCTTTTTTTCACCATTTCAGGCGTTATTCTCAATTTCAAT
TGTGTGTGTGATCCCTTGGGTTTTGGTATCCTTCCTTCCGTTGTTCGGCG
TCTGATTTTGCGATGCTGCAGCGGTGTGGTCGTGCGTACGTAGACCACAG
AATAAGGTATATACAGGCAATATTCGAAGTGCTGTTCGAAATGGTGCCGC
TTGCTGCGGACATGTTCTTTGACCAGCCCATTGGCAGGTGCAGTTTGACA
AGTTGGATGTGGTTGGAGACAGAATGGTACTCGATCTGCATCAACAAATA
ACGCCTCCAGCGACCCCCGCCCTTCCTTACCTGCAGGGCGCCACACGAAC
ACTCGCGAAGCAATTGGTTACCCTTCGGCATCAAAAAGATCAACTCTACA
CGGCTAGAGCTAGAATAGCGGGGGTTGGAAACCAAGCATCATCTGCAGCA
ACAACTGTGAGTACCCCGCAGACCCACCCGCTCCTACCCGTGCGTTCTTC
TCGTTCTTGGAGCTGCTCGTGCCGCATAGTCCTATCTCGGTAAAAGCGCA
ACCAATACAAATGTATGGTTAGGGCCAGGGCTGTAACAATGGGTGAAATG
CTGCACTGCTGTCGTTTTTCTGTCAAAATTAGCGGTATGGCTGGTTTGGG
GTGCGCTGTACTGTGCCGATCAAGGATACCGCATACTTTTTACTTTGCTG
GTTTGAGCCGACCAAATGTACCCATGACATCGTTCGGCGAGTACTGGCGG
GCTCACGATGTCTGTCTACCTGTCTTGCTGAGCGCCCGGTTCACTCTTCT
CAAGGTTTTTCGGTCGCATCTAGACTATGACCCCCTCCACGATTTAGTCA
CCAACACAATCCGAGCTTCTCTTGCAGCACTAGAATACCCAACAATGGCA
TTCGTTCGTGTCCCTTCGCACGGTGCGGGGTTCTCGTGCAGCTGGTGAGA
TGGCGTGGTCTAAACCCCCCGTGTTGGTTTATGTTCTCCTGATGCCATCC
ATCGCTGAGCGCCGTGTTGCTGTTTTGGACCGCCTACCGTTGTACTGTCG
GCCGCTGTTTTACGATGTGTTCTCCGAAACGGGTCTTTGCTTTGGGTTGT
CAACTCCGGCGAGCAGGCTGCCCTTGCTGGCGTGATGGGAAATGTTGCTG
GCGTGATGAAAAAGGTGAACGACAATGTTAGCAACGAAGAGATGGCCAAG
GTCATGCAGCAGTTCGCCGTTGAAAACGAGAAGATGGGTATGACTGAAGA
AATGATGGACGACGCCCTCATCGATGCGGTAAGTCTTATGCTATCGTCGC
GTTTTTCGTATCCTCAGTAACACGTAGGGACACCGCAACAAGTTCACATC
TGACTCGAGTTGTCAGCATATACCAGCTACATGTGTTACGGCCCTTGCAG
TTGCTTATTTAGTTGGTTCATTTGGGTAGGGTGGTGCCGACCTCAGTGAT
CAGCCAGCAAGAAGCCATCCCCGACAAGCCGTAGCGCAGGTACTGTTATA
TTCGTCAGATCTGTACTCTATGTCGGATATGGCGCATAACCTGTGTGCTA
AATACAGGGGACAAGATATTCGCTACTGACCAGTGATCTAAGGCGCCGCA
TAGTGGGTAACATTTTTCGAGGCAGTGAAAGGGAAATCCCTGGCGTAGAT
CATGTGGCTCTGTGGTTGGTCGGATTGACGTTTGAGAAGGCGGTGTGTAG
AAGGGTGAGCACAATTATGGCTCAGCGAGAGGACTGGCCAGGCTGCCGCT
GGGAAGGAAGGTGTTGTTGCTACTAAGGGGAGACATGCCTTGCGAAGAAG
GAAGTACGTCGGGGTTGCAGTGCCAAGTTCTATAAGACAGCAGGAAGGTG
GGCGCTGGAGTGCGGGATGTAAGGCGTGCGAAAGTCACGGGTGGCGCCAA
ATGCCTCCCCCGTCTTCACAAATTGGGCTTTAAAATGTCTGCAGCAAGTA
CACGGATGAGGTTAAGATCTCAAATTGTAGTAGCAGTGCTGAAGTGGCTG
CACCCATGCGACCGCTTTTTTCTCATTTCATTCAGCGATCGATCGCGACA
ACCTTTTTAGGAGGAATGCAAATGACCAAGACTCTCTTGTTTGACAAGCT
GCGTACGTTTGTGAGCGATAAAGGTTCGAGTGCCAAAGACCTGGTTGGTC
GAGGGATTGGCGGGATAACCCGCTGTCCCCGTCGAAGAGATGATGGTGTC
GCAGCAAGTGGGCTCGAGTATGCTACGGCTAGTGTTGCGTCAGCTCATGC
ATTCACGCCACCGGAGCCGAGCGGCCCACATGACACCAGCGAGCACATAG
TTACGTAGTCTTGTAGATCACGGGGGCGACAGGGTGATGTGGAGGCCGAA
CAGATTGACGGCTGCGATGAACCACATGTGGCACCACTGGATCGTCATCT
CTACGACCCCGTGGAGCTGTTGGGAGGTGTCGTAGGGCCGATGACGTCCA
TATATTGCTGAAGTCTGGGTATGGAGCGACGTCGTTGTCTGTGGCCATAT
ACCACCGCCTTCGGCAGCATTGGACCGGGTTGCAGTCAACACAGCTCAAG
ATCAGTGGCATAAAGGCATAGGTCGTTGATTGGCGCTTGGTTGTTCTAGG
GCAGAAGACGTTACCGTTGCATTCAAACGATTGTGCCTGGTTGGAGCTAT
TTGCGCAAACTGATGTGTGTTTGTCTGCAATGACAAGTCGTTGAGGGAGA
CTTTGGATATGGGTAGAAAAAATGGCAAAGCGGCTCGGGGGCGACGGCGC
GGCTGAGGCCGGGTCGGTGGATGCGCGGGTGAACATGCGGGAGCGAGGTC
TTGGTAAGGCCTGCGCGTGGGGGTGAAAGTGAACCCTGCAGCGGGAGGCG
TGCGGTGTGGTTGTCTGCGGTGGAGATACACAAGAAGTGGCGATCTCTAC
ACTGTGGACAGGAAATTATATAATCATGCCGGAGAAGGTTGAAATGAAAG
AGCGGATCGCGGTGCTAGAACAAGTTGTGGCGGAGACGGCCGCCGAGGGC
TTGCCGCCGAAAAATTCGAGGAATTGCAGGAATTGGTGCTGGCCACCTAC
GCCAAGGCTTATAAGTGCTCGCTGAGTGGTGATTCACTGGCGGTATAGAG
CCGCTGTGGGGATGTTCACGCGACGGCAGGCAAGCGGCTTGGGCATGGCC
GCGTCTGATAGAGCGCGGCAAGGCGGCATGACTGGAGAATCACTTGACAA
AGGTGGTTCCAAAAGCAAGATTTGGCAGAATCGCTGCGGCCGTGCCGAAG
AATACCACTTGTTACATAGTCACCAACTACTGTAGTGAACAACTTGATCA
TCTCCAGAGCAATGCGATGCCGAATTGGCAGGAAATCGGGCGGCGCATGG
CTGGGGCCAGCGTGTTCTGCACGTTGTCTGCTGTAAGAGTACTGGCGGCT
GCCGTTGGGCCGGGAGGCTCACGAAATCGCCACGATGGTGGCAGATTAAT
GGCTGTTCACGCCCACTCGTGTTCCATAGCGAGTGTTGAAAGTGAGTAGT
ACGTTCCTGGGCACGATGGGAGAGGTTTTGGATTGACTGCTGGAGGAGAT
CTGCGGATTCTGGAGGGAGGAATTGAGCATATGGGCCAGGAATTGGCACG
AACTGACGCGGAGTGTTTTTTGGCGAAAATACCAAAGTGACCTAGGGCAG
AATAGGACTCATGTAATTAGAATGTTTTGACCACAACATCACAGCTTTCT
CAGGCGTTACAGTATACTAGCAAGCGTGTTTTTCATGTGTGCTGCGCTGT
AAGAAGTTCACGCTCAGAGTTAACACAGGCTTGAGGGTTTCAGTTGCACA
CCCTACGCCTACAAGTGACCCGAGTGTACACTGAAACGTGATGTATGGAT
AGCCGTATATCTCTCTTCGTGGAACCAGCTGAACTTCCCGTTTCAGTGAC
TCTTGTCCAACAACTTGCGAACACCACCTTTTCCCCGACTCTCAATTCTC
CGATCTCCGTGCCCTCACCTGCTACCGCTGCACTCCATCCCTATCTCCCT
CCATTTTTCGTTACGTCCGTCCATTAGTTTGACGGCGAAGGGGTAGAGGC
AGAGGCGGATTCCGTTGTTGACCAAGTACTGGCGGAAATCGGACTAGATG
TCGGCGGGCAGATGACGGACGCGCCGACGCACGCCCCGGCCGTAGCGAGG
CCATCTACTGCGGATGAGACGAAATTGGACGCGAAGACAGAAGAGCTTTT
GAAACAGCTAGAGGCTCTCTGACATATATTTTTCTTGTGTTGTATTTGGG
GATAAGTCAATCTGACGATTCCTATTTGGTCGGGGGGGCTCATCAACGCC
CCGATTTTACTGTGGCACCGTGTCACATTGAACGGTGTGTGTCTATTTTC
TTTGCAGATCAGCCATCACGACTATTGTACATTACTCGTGTTGCATCCCA
TGAGTAGGCTCCGGTAACTTGTTATCGTATTCGCTGGTTGTACCGTTCGG
ACAGTCACGTGTAGGATCACTAGACCACATACGGTATTGTGCGACCTTAT
GGTCAACGCTTACTGACTCTGATGATATTCGTATGCTTCTTGAACGCGTT
CACCGTTGGATGCTGATCATCTTGGGTAGCACACATACAAATTACGCACC
TTTGAGCAAAGAGACGCCAAGGTCAATAGAGAAACGCTTTATGAAAACGA
AAATGTTCAAGCTGCATCACAACAACCGATGGTGAGTAGTCCATTAGAGT
GAACTCTAGTAGCCCCGACTTGCTCCCCACGATATTCGGTACATCATCTT
CTCCATCCATAGACATGCGTTTTCGGTGTCGCCAGGTTAATTGATCATTT
TCCTTCTACGATCGTATTCGGCACTAGGGTGCTGTGCCCCGTTCATCCAT
ATGCCGGGTGGCGTTAGTGGATGTGCTTGTGTAGATGCTTAATAGGTGAT
ATGTATGAGCACTCCCCCTTCCCTTCGAGTCACTCAGGTTTATGTGCGAT
GCATCTCCTCGCATTATACTGTACCTCGCTACCTACGTATGCATAACGTT
TGTGCTGCTTTCCAAGACAGTCGACAGGATTTGCAACAACTTCTCCAGCG
AGATTTGTGCAGGGGCTGAGCGTACTGTGCGTATCGGGTCTTGAACACGG
CTATGCGGATCCTTGGGTGGCCCATGCGCGCGACTTCAAGAGATGCGGCC
AACTTCCCCCCACATGTCCTGCCATTTTTGCACAGCTAGTTAGCCTTTTC
GCAAGAGGGAAAAAAGTTCGATTTCGAACCGATTCGCCTCGTGACAGCTT
GAAGTGATAAATTTTTCGAATCGAAAGTTCTTAGTTACATTAAAACCCCG
AGTCTTTTGCTGTCACAAGGTGAATCAGTCTTTTTTCGACCTGCGAGAAG
TTAAACTGTGCTAAAATGGTAGTACACGGGGTGGGGTACATTGTTCTGAT
TGACGAGGGTGCAGGTTATTAATGGATACTACTCGGTACTATGAGGAAGG
AAAAATATACCCGCAAATTTGGCATACCCTAAACTCTGCAACATGCAGAG
TTTCCCCTGGGCCATAATCTTGGGCGCTATCGAAGCGCATTTTATCACAA
GGCACAGCCCATACTGGGTCACTAGCGCGATGCCTTATAGAAAATGACTA
AGCTGTACTAGGTGATACCAATGCGGCACACTCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2298:6822..14406-

>mRNA_H-paniculata_contig2298.6156.1 ID=mRNA_H-paniculata_contig2298.6156.1|Name=mRNA_H-paniculata_contig2298.6156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig2298:6822..14406- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCCCCGAAAAAAGGTCGACCCTAAAGATGTTTCCCCGAAAAAAGG
TCGACCCTAAAGAGGCAGCGAAGACTGCCAAGAGGGAGGTACGGAGAGGA
GAACGCGATATAGAGAAGGAATTAAGAAACTTGGAACGATCCGAGAAGTC
TTTGATTTCAGATATCAAGAAGACTGCTAAGGGCGGCAATCAGAGGCAGC
GAAGACTGCCAAGAGGGAGGTACGGAGAGGAGAACGCGATATAGAGAAGG
AATTAAGAAACTTGGAACGATCCGAGAAGTCTTTGATTTCAGATATCAAG
AAGACTGCTAAGGGCGGCAATCAGGGCGCCACACGAACACTCGCGAAGCA
ATTGGTTACCCTTCGGCATCAAAAAGATCAACTCTACACGGCTAGAGCTA
GAATAGCGGGGGTTGGAAACCAAGCATCATCTGCAGCAACAACTGGCGCC
ACACGAACACTCGCGAAGCAATTGGTTACCCTTCGGCATCAAAAAGATCA
ACTCTACACGGCTAGAGCTAGAATAGCGGGGGTTGGAAACCAAGCATCAT
CTGCAGCAACAACTGCTGCCCTTGCTGGCGTGATGGGAAATGTTGCTGGC
GTGATGAAAAAGGTGAACGACAATGTTAGCAACGAAGAGATGGCCAAGGT
CATGCAGCAGTTCGCCGTTGAAAACGAGAAGATGGGTATGACTGAAGAAA
TGATGGACGACGCCCTCATCGATGCGGCTGCCCTTGCTGGCGTGATGGGA
AATGTTGCTGGCGTGATGAAAAAGGTGAACGACAATGTTAGCAACGAAGA
GATGGCCAAGGTCATGCAGCAGTTCGCCGTTGAAAACGAGAAGATGGGTA
TGACTGAAGAAATGATGGACGACGCCCTCATCGATGCGTTTGACGGCGAA
GGGGTAGAGGCAGAGGCGGATTCCGTTGTTGACCAAGTACTGGCGGAAAT
CGGACTAGATGTCGGCGGGCAGATGACGGACGCGCCGACGCACGCCCCGG
CCGTAGCGAGGCCATCTACTGCGGATGAGACGAAATTGGACGCGAAGACA
GAAGAGCTTTTGAAACAGCTAGAGGCTCTCTGATTTGACGGCGAAGGGGT
AGAGGCAGAGGCGGATTCCGTTGTTGACCAAGTACTGGCGGAAATCGGAC
TAGATGTCGGCGGGCAGATGACGGACGCGCCGACGCACGCCCCGGCCGTA
GCGAGGCCATCTACTGCGGATGAGACGAAATTGGACGCGAAGACAGAAGA
GCTTTTGAAACAGCTAGAGGCTCTCTGA
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