prot_H-paniculata_contig2292.6131.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2292.6131.1
Unique Nameprot_H-paniculata_contig2292.6131.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length710
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2292.6131.1 vs. uniprot
Match: D7G5K5_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K5_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 1.050e-62
Identity = 132/219 (60.27%), Postives = 155/219 (70.78%), Query Frame = 0 
Query:  422 AGVEILTPEFLDDLLACWDFLHMMGMGQTKDYHGPIPSMIPGQPPLLEP---EGERVTLGGRLRAGPSPLGPNLAAGKPPSLSQLYAAIVCPE-RGWLDALQVCLVDMIQAE-VASLDKRDAGVTVRPNALTWPEVARQAVSALLLQWAEQDAIYGDPSGA-------LGKGKGTKPGGKGPKQQPTERSAACLWLDAQHDARSGMAFLQSITGNADPP 628
            A VE L PEFL+DLLACWDFL +M + +T+ Y+GPIPSM+PGQPPL E    +G     G  LR  PSPLGP     K P+L QLY+A+  PE RGWLDALQV LVDM+Q + V+SLD+R+A VT RPN+LTWPE ARQAVSALLL WAEQDAI+GD SGA        G+    K G  G K +P   S AC+WLDAQHDAR G  F++SITGNAD P
Sbjct:   57 AAVEALEPEFLEDLLACWDFLQLMSVAETEAYNGPIPSMVPGQPPLPEQTDGKGGXXXXGVFLRPVPSPLGPK--GFKAPTLPQLYSAVSSPEQRGWLDALQVRLVDMVQDQMVSSLDEREAAVTTRPNSLTWPEFARQAVSALLLNWAEQDAIFGDTSGAPSQSQAAQGRAARKKLGKGGGKIEPHHLSPACVWLDAQHDARHGARFIESITGNADNP 273
[Close]
BLAST of mRNA_H-paniculata_contig2292.6131.1 vs. uniprot
Match: A0A6H5J6B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6B9_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 3.740e-42
Identity = 107/217 (49.31%), Postives = 130/217 (59.91%), Query Frame = 0 
Query:  427 LTPEFLDDLLACWDFLHMMGMGQTKDYHGPIPSMIPGQPPLLEP---EGERVTLGGRLRAGPSPLGPNLAAGKPPSLSQLYAAIVCPE-RGWLDALQVCLVDMIQAE-VASLDKRDAGVTVRPNALTWPEVARQAVSALLLQWAEQDAIYGDPSGALGKGKGTKPGGKGPKQQPTERSAACLWLDAQHDARSGMAFLQSITGNAD--PPTKPQKKPP 636
            L PEFL+DLLACWDFL +M + +T+ Y+GPIPSM+PGQPPL E    +G     G  LR  PSPLGP     K P+L QLYAA+  PE RGWLDALQV LVDM+Q + V+SLD+R+A  T RPN+      AR+                      LGKG G        K +P   S AC+WLDAQHDA  G  +++SITGNAD  PP K + K P
Sbjct:  266 LEPEFLEDLLACWDFLQLMSVAETEAYNGPIPSMVPGQPPLPEQTDGKGGXXXXGVFLRPVPSPLGPK--GFKAPTLPQLYAAVSSPEQRGWLDALQVRLVDMVQDQMVSSLDEREAAATTRPNSAAQGRAARKK---------------------LGKGGG--------KIEPHHLSPACVWLDAQHDATHGARYIESITGNADNPPPAKKEVKSP 451
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2292.6131.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5K5_ECTSI1.050e-6260.27Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J6B9_9PHAE3.740e-4249.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 25..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 33..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..710

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2292contigH-paniculata_contig2292:2999..13670 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2292.6131.1mRNA_H-paniculata_contig2292.6131.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2292 2674..13670 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2292.6131.1 ID=prot_H-paniculata_contig2292.6131.1|Name=mRNA_H-paniculata_contig2292.6131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=710bp
MSSRSRTSSAPAPARRGRGRGRPPAAAAAAAAQSSAERRASSSGRKSQRG
RGSPAVRGRAGSRGRGIRGRGAGGASTKNASSESDASQEDSSAADDGDGQ
REVEELATEMEGGEEEEEESGSDESSEEEEGSDDEDRDADANGQETDDGS
SNSSSSNNNSNTDNSSSSGGSSSNSDSESEKEEEEVILDNKRKTPPTFTT
ASKNKSRGGSSRAARGKRPAAAGRGRSPGRRGRGGRGGRGGGRPRKVVTP
PSSSDNDDSSGSSAAESASESSSSSPCESSSSEFTPAVGRRRRPPQKQKP
AAVSAAATSSSKRSRRRVSPSTPTATPAATPAAAAAGSSRRKGSSTPASK
RKISAANKKGKSKALNHTVELEPPPSPKVPKIPPPPLPTATPLGHHVAAG
AAGFVLGAGRMRAGPRGSAQSAGVEILTPEFLDDLLACWDFLHMMGMGQT
KDYHGPIPSMIPGQPPLLEPEGERVTLGGRLRAGPSPLGPNLAAGKPPSL
SQLYAAIVCPERGWLDALQVCLVDMIQAEVASLDKRDAGVTVRPNALTWP
EVARQAVSALLLQWAEQDAIYGDPSGALGKGKGTKPGGKGPKQQPTERSA
ACLWLDAQHDARSGMAFLQSITGNADPPTKPQKKPPYVKTGKPPGRRARD
SITEGAEDGEEQEMAFGNDQDKGDMAVAAAGAAAGTSAKNHLSELAARGV
SPRVAGCVGG
back to top