mRNA_H-paniculata_contig22916.6130.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22916.6130.1
Unique NamemRNA_H-paniculata_contig22916.6130.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22916.6130.1 vs. uniprot
Match: A0A6H5K4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W3_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 4.470e-31
Identity = 57/100 (57.00%), Postives = 72/100 (72.00%), Query Frame = -3 
Query:    5 SVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLVNANCRRSTKVVPCKSGDRSNVNSHLKSIHGLVGRVSVVKADKKSEVQQDIKESM 304
            +V AVD+FQ P+GFV+KG R+ SFMYSLGVYVE+      KFFCL   +CRR  KV+PC+ GDRSNVNSHLKS+HG+ G+  V K  ++   QQ I  S+
Sbjct:   87 TVAAVDNFQAPSGFVKKGCRQDSFMYSLGVYVEQIGGDQHKFFCLAGPDCRRKKKVIPCRRGDRSNVNSHLKSVHGMQGKGGVTKQARRQSTQQSIGRSL 186
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BLAST of mRNA_H-paniculata_contig22916.6130.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.700e-29
Identity = 56/95 (58.95%), Postives = 70/95 (73.68%), Query Frame = -3 
Query:   17 VKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLVNANCRRSTKVVPCKSGDRSNVNSHLKSIHGLVGRVSVVKADKKSEVQQDI 301
            VKAVDDF+ P G+VRKG+RE S+MYSLGVY+E       +F+CLV+  CRR  K++PCK GDRSNVNSHLK+ HGL G   VVK  KK   +++I
Sbjct:   83 VKAVDDFKVPEGYVRKGSREKSYMYSLGVYIEALKGDKHQFYCLVDGTCRRKNKMIPCKGGDRSNVNSHLKNAHGLQGVGGVVKEGKKKAAKENI 177
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BLAST of mRNA_H-paniculata_contig22916.6130.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.780e-24
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = -3 
Query:    5 AVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLVNANCRRSTKVVPCKSGDRSNVNSHLKSIHGLVGRVSVVKADKKSEVQQDIKESM 295
            AVD+F  P GFVRKG+R  SFMYSLGVYVEK  S +  +FCL ++ CR + K++PC  GDRSNVN+HLK  H + G   V K + K E Q  I+ ++
Sbjct:   82 AVDNFSVPAGFVRKGSRVDSFMYSLGVYVEKSGSTNHTYFCLASSKCRSNKKIIPCPKGDRSNVNTHLKRQHKMQGTEGVKKRNTKKETQTSIQSAL 178
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BLAST of mRNA_H-paniculata_contig22916.6130.1 vs. uniprot
Match: A0A6H5KQI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQI9_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 7.230e-23
Identity = 51/102 (50.00%), Postives = 65/102 (63.73%), Query Frame = -3 
Query:    5 EDSVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLVNANCRRSTKVVPCKSGDRSNVNSHLKSIHGLVGRVSVVKADKKSEVQQDIKESM 310
            +D   AVD F  PTGFVRKG+R  SFMYSLGVYVE+      K++CL +A CRR  K +PC  GD SNVN+HLK  HG+ G     K   ++E Q  I+ ++
Sbjct:  325 DDIAAAVDAFTVPTGFVRKGSRVDSFMYSLGVYVEQSAGAKHKYYCLASAECRRGRKEIPCPRGDCSNVNAHLKRKHGMQGTEGAKKDATRNEGQGTIRSAL 426
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BLAST of mRNA_H-paniculata_contig22916.6130.1 vs. uniprot
Match: A0A6H5KRC7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.760e-7
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = -3 
Query:  164 EDSVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEKQDSKDGKFFCLVN 310
            +D   AV+ F  PTGFVRKG+R  SFMYSLGVYVE+      K+ CL +
Sbjct:   79 DDVAAAVNAFTVPTGFVRKGSRVDSFMYSLGVYVEQSAGAKHKYCCLAS 127
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BLAST of mRNA_H-paniculata_contig22916.6130.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.190e-5
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = -3 
Query:  203 EDSVKAVDDFQTPTGFVRKGTREASFMYSLGVYVEK 310
            +D   AVD F  PTGFVRKG+R  SFMYSLGVYVE+
Sbjct:   79 DDIAAAVDTFTVPTGFVRKGSRVDSFMYSLGVYVEQ 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22916.6130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K4W3_9PHAE4.470e-3157.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYQ2_9PHAE2.700e-2958.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE1.780e-2452.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQI9_9PHAE7.230e-2350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRC7_9PHAE2.760e-755.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBM2_9PHAE4.190e-569.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22916contigH-paniculata_contig22916:2145..2675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size531
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22916.6130.1prot_H-paniculata_contig22916.6130.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22916 2150..2479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929640.3707478-UTR-H-paniculata_contig22916:2144..21491622929640.3707478-UTR-H-paniculata_contig22916:2144..2149Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22916 2145..2149 +
1691480947.184315-UTR-H-paniculata_contig22916:2144..21491691480947.184315-UTR-H-paniculata_contig22916:2144..2149Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22916 2145..2149 +
1622929640.4019415-UTR-H-paniculata_contig22916:2479..26751622929640.4019415-UTR-H-paniculata_contig22916:2479..2675Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22916 2480..2675 +
1691480947.2039933-UTR-H-paniculata_contig22916:2479..26751691480947.2039933-UTR-H-paniculata_contig22916:2479..2675Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22916 2480..2675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929640.3843505-CDS-H-paniculata_contig22916:2149..24791622929640.3843505-CDS-H-paniculata_contig22916:2149..2479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22916 2150..2479 +
1691480947.1937454-CDS-H-paniculata_contig22916:2149..24791691480947.1937454-CDS-H-paniculata_contig22916:2149..2479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22916 2150..2479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22916.6130.1

>prot_H-paniculata_contig22916.6130.1 ID=prot_H-paniculata_contig22916.6130.1|Name=mRNA_H-paniculata_contig22916.6130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MLSLMSCCTSLFLSAFTTLTRPTSPCMLLRCELTLLRSPLLQGTTFVLRR
QFAFTKQKNLPSLLSCFSTYTPSEYMNDASRVPFLTKPVGVWKSSTALTL
SSNRCTPLT*
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mRNA from alignment at H-paniculata_contig22916:2145..2675+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22916.6130.1 ID=mRNA_H-paniculata_contig22916.6130.1|Name=mRNA_H-paniculata_contig22916.6130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=531bp|location=Sequence derived from alignment at H-paniculata_contig22916:2145..2675+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTCATGCTTTCCTTGATGTCCTGTTGCACTTCGCTCTTCTTGTCCGCC
TTTACGACACTAACCCGCCCCACCAGTCCGTGTATGCTCTTGAGATGCGA
GTTGACGTTGCTGCGGTCGCCGCTTTTGCAGGGGACTACCTTCGTACTCC
GGCGGCAGTTTGCGTTTACCAAGCAAAAGAACTTGCCGTCTTTACTGTCT
TGCTTCTCCACGTACACTCCCAGCGAGTACATGAACGATGCCTCGCGGGT
GCCTTTTCTCACAAAGCCAGTCGGTGTCTGGAAGTCATCCACTGCCTTGA
CGCTATCCTCCAACCGATGCACCCCCCTAACTTAGTGTAGACCGCCGGTT
TGACTAGCTGTACGCCTGCATCACTGCCTCCCGCGCCAAGTATCTCTACC
TCATTGTTTGCGTCTCCCTCTGCCTCCCCCGCGACTACCGGTGTTCTGTC
TTGAGGGTCTGCAGGGGTACCGCTCATGTTCGCTCACAAAACGGAAACAG
ATGCTCCTACTTGTAGCCCCAACTACCGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig22916:2145..2675+

>mRNA_H-paniculata_contig22916.6130.1 ID=mRNA_H-paniculata_contig22916.6130.1|Name=mRNA_H-paniculata_contig22916.6130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig22916:2145..2675+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTTCCTTGATGTCCTGTTGCACTTCGCTCTTCTTGTCCGCCTTTAC
GACACTAACCCGCCCCACCAGTCCGTGTATGCTCTTGAGATGCGAGTTGA
CGTTGCTGCGGTCGCCGCTTTTGCAGGGGACTACCTTCGTACTCCGGCGG
CAGTTTGCGTTTACCAAGCAAAAGAACTTGCCGTCTTTACTGTCTTGCTT
CTCCACGTACACTCCCAGCGAGTACATGAACGATGCCTCGCGGGTGCCTT
TTCTCACAAAGCCAGTCGGTGTCTGGAAGTCATCCACTGCCTTGACGCTA
TCCTCCAACCGATGCACCCCCCTAACTTAGATGCTTTCCTTGATGTCCTG
TTGCACTTCGCTCTTCTTGTCCGCCTTTACGACACTAACCCGCCCCACCA
GTCCGTGTATGCTCTTGAGATGCGAGTTGACGTTGCTGCGGTCGCCGCTT
TTGCAGGGGACTACCTTCGTACTCCGGCGGCAGTTTGCGTTTACCAAGCA
AAAGAACTTGCCGTCTTTACTGTCTTGCTTCTCCACGTACACTCCCAGCG
AGTACATGAACGATGCCTCGCGGGTGCCTTTTCTCACAAAGCCAGTCGGT
GTCTGGAAGTCATCCACTGCCTTGACGCTATCCTCCAACCGATGCACCCC
CCTAACTTAG
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