mRNA_H-paniculata_contig2290.6122.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2290.6122.1
Unique NamemRNA_H-paniculata_contig2290.6122.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2290.6122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2290contigH-paniculata_contig2290:7991..8587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929639.1734514-CDS-H-paniculata_contig2290:7990..80681622929639.1734514-CDS-H-paniculata_contig2290:7990..8068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2290 7991..8068 +
1691480946.8715322-CDS-H-paniculata_contig2290:7990..80681691480946.8715322-CDS-H-paniculata_contig2290:7990..8068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2290 7991..8068 +
1622929639.2023497-CDS-H-paniculata_contig2290:8436..85861622929639.2023497-CDS-H-paniculata_contig2290:8436..8586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2290 8437..8586 +
1691480946.8836105-CDS-H-paniculata_contig2290:8436..85861691480946.8836105-CDS-H-paniculata_contig2290:8436..8586Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2290 8437..8586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2290.6122.1prot_H-paniculata_contig2290.6122.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2290 7991..8586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2290.6122.1

>prot_H-paniculata_contig2290.6122.1 ID=prot_H-paniculata_contig2290.6122.1|Name=mRNA_H-paniculata_contig2290.6122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
EVPIEAPFGSFVPIPDVINRSQHEDVVVINVFLYPTKFPGANGFCANPTT
TVDELKGQIKKMSGIERRRQTLWGPN
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mRNA from alignment at H-paniculata_contig2290:7991..8587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2290.6122.1 ID=mRNA_H-paniculata_contig2290.6122.1|Name=mRNA_H-paniculata_contig2290.6122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=597bp|location=Sequence derived from alignment at H-paniculata_contig2290:7991..8587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTGCCGATTGAAGCCCCGTTCGGATCTTTCGTCCCGATCCCCGATGT
CATAAATCGATCACAACATGAAGATGTGGTGAGTACATTTCCCCCGTTCG
TATCTTTTTGAGACAATCGAATGACTTTTGTTATTTTGCAGGACCTCGGT
TTTAAAAATCGTGGCCAGCAAAAAATACAAGCAAAAACCAGCTGTCGCGG
GCTGATTTCTGGCTGCGTTTAATTAAAAAAAAATTTCCCAGGTAACTTGA
GCGACGAGCATTGTGCCGTGCATTTTTTTTTAACTCGGCTGTTTCTGCTA
CTGAAGTGTACCTACCAGTGGGGCTTCGTCCCGAAAGGCGACATGCGAGG
ATTTAATTAACGCCATGCGTCACTGCAAGCGTTGTGTACTTACCCGTTCT
GCACCTTCTGCTTGGTGCCGTATCTTCTGCTGGGTCAACGTGGTAGGTGG
TGATCAACGTATTCCTTTACCCGACCAAATTTCCGGGGGCGAATGGCTTT
TGCGCGAACCCCACCACAACGGTCGATGAGCTGAAGGGCCAAATAAAAAA
AATGAGCGGCATAGAGCGCCGGAGGCAGACTCTTTGGGGGCCAAACT
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Coding sequence (CDS) from alignment at H-paniculata_contig2290:7991..8587+

>mRNA_H-paniculata_contig2290.6122.1 ID=mRNA_H-paniculata_contig2290.6122.1|Name=mRNA_H-paniculata_contig2290.6122.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig2290:7991..8587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTGCCGATTGAAGCCCCGTTCGGATCTTTCGTCCCGATCCCCGATGT
CATAAATCGATCACAACATGAAGATGTGGAAGTGCCGATTGAAGCCCCGT
TCGGATCTTTCGTCCCGATCCCCGATGTCATAAATCGATCACAACATGAA
GATGTGGTGGTGATCAACGTATTCCTTTACCCGACCAAATTTCCGGGGGC
GAATGGCTTTTGCGCGAACCCCACCACAACGGTCGATGAGCTGAAGGGCC
AAATAAAAAAAATGAGCGGCATAGAGCGCCGGAGGCAGACTCTTTGGGGG
CCAAACGTGGTGATCAACGTATTCCTTTACCCGACCAAATTTCCGGGGGC
GAATGGCTTTTGCGCGAACCCCACCACAACGGTCGATGAGCTGAAGGGCC
AAATAAAAAAAATGAGCGGCATAGAGCGCCGGAGGCAGACTCTTTGGGGG
CCAAAC
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