mRNA_H-paniculata_contig2287.6109.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2287.6109.1
Unique NamemRNA_H-paniculata_contig2287.6109.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2287.6109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2287contigH-paniculata_contig2287:8047..14173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size782
Cds size780
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2287.6109.1prot_H-paniculata_contig2287.6109.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2287 8047..14172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.5952601-CDS-H-paniculata_contig2287:8046..81091622929637.5952601-CDS-H-paniculata_contig2287:8046..8109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2287 8047..8109 +
1691480946.2484524-CDS-H-paniculata_contig2287:8046..81091691480946.2484524-CDS-H-paniculata_contig2287:8046..8109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2287 8047..8109 +
1622929637.6178215-CDS-H-paniculata_contig2287:10771..114021622929637.6178215-CDS-H-paniculata_contig2287:10771..11402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2287 10772..11402 +
1691480946.264732-CDS-H-paniculata_contig2287:10771..114021691480946.264732-CDS-H-paniculata_contig2287:10771..11402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2287 10772..11402 +
1622929637.666213-CDS-H-paniculata_contig2287:14086..141721622929637.666213-CDS-H-paniculata_contig2287:14086..14172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2287 14087..14172 +
1691480946.2763112-CDS-H-paniculata_contig2287:14086..141721691480946.2763112-CDS-H-paniculata_contig2287:14086..14172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2287 14087..14172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2287.6109.1

>prot_H-paniculata_contig2287.6109.1 ID=prot_H-paniculata_contig2287.6109.1|Name=mRNA_H-paniculata_contig2287.6109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp
RGHSGRPRPSSATDGGVGGGQISYFPLLAADEDSDHRYYLRQRPHQPHHH
HYTYDISTAPRYTPKPSNNVSSSVSGATGYLYQGHSSSSRGGSAKSFRHP
VKVAATLTTNGSRPNGTMNNTSPSPGVVSAATTTSNAHFVTKPMMQKRER
GVGQPLRAHPTNATAASGGVIHSNGNNASSGGGSSSSTVLNGKIDPSAGG
SSPTPNGTLVDGSGGRTLGVGTKMAGAGEGSGAAASPFVMGGRKPFAPRC
LALATDAGTR
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mRNA from alignment at H-paniculata_contig2287:8047..14173+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2287.6109.1 ID=mRNA_H-paniculata_contig2287.6109.1|Name=mRNA_H-paniculata_contig2287.6109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6127bp|location=Sequence derived from alignment at H-paniculata_contig2287:8047..14173+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGGACATAGTGGCCGGCCACGGCCGTCGAGTGCGACGGATGGCGGTGT
CGGGGGGGGACAGGTAAAGTGGCTGCAGCCGTACAGTTCAAGCGTGGTGG
GCTTGCTCAATATCTAAGGTTCTGCAAGGACCCAGCCAACGTGGTTGGAT
TCGTTGGAAAGCTCTGCCAAGGAGATTTCTAGTGGTGGTCTCCGCTTTTC
TCCGCCATGGGGACTTTCTCTAATGACCCTTTGAAGCATGCGACGGAAGT
TCTAATTTTGACTGTTTTCGCGACTGCTGAAGTCAAACACTGTGAGGAGA
AAAACAGTAACGACATCTCCAACGTCCTTGTAGAACCTGAGACATAAAGC
AAGATGTTGCGGCTCTTACTATTCTGAGTTGAAGTAATCATTTTTATAAA
GAGTAACTGTGTTTTAGAGTCAGCGTAATTGCGCTGCTTTTTGTTTATTG
TGCTGCTGTGGCACGCAGCACAACTGATACTACTGTACAACTGAAAGCGA
CTCCGAATTTGAAAAAAATATCTAAGAATATCCAATTTGGCAAGAGGTGT
TTGTTTTTTTTGGACTTCCCCAATTCGCCCATCATAAATTATGACTGCCT
AGAATACTTCAGCTGTTCGACTGCCGCCACTTTACCTGCAAAAAGGCTTT
CGGAGAGTAGTCATCTGTGCTATTTTGCTGCCTGTTAATGTATTCCGCCT
ATAGAAATAGCCAGTGAAATTGATAAGGTGGGAAACGGTTTGCTTTCGAA
TAATGTGCAGCTATTTAATATTCGCTTAAATCTGGCGATAGAATTTCGAA
GCGATGCCCGGAGGGTGGTATCGGAATGTTGCAGTGTCAGCCCCCTCGTA
AGAAACATGTCTGAATAAAAAAAAAGCCTGAGAGATTCTGCTTGTTCAAA
GAAAATTTGACTCAAGAAATCGAGCTCAAATGGAAGCCCCATACTATTTT
CTATCTAATAAGACAAGAAAGAGTGCTTTCCTGCGTCTTCACTGGGTCAG
TGGGGCATGCCGCTTCCGGTTCGATTATTGGTTTTCTTAATTTGACAAAA
ATATCTAAATTACTTTCTTTTTGTACCGTAAGCCTCATTCTAGGAGTACT
GTAAGTCTGATTTTAGGGGATTCAACTCTTGACGAGAGCTGCACCCAGTA
CCACAATACTATACTTTCTGGCAAAAGGTTTGCGACTACGAAGTATATTT
TGGGCCAAATGGCTTTTTTTTTTCGTTTGCTGGCATCCGTTAAAGATATC
TACCTTGGCATCAATACGAGTCTCTACACAAGATCTCCCCCCGAAAGTTG
GTCATCGTTGTGTGTATAAGTCATCACTTACGGTTAGTTCTCTAGTTGTG
TATTTTCTGCTTTTATTGTATATAAAATCCAGCTTCCAAACCACGTTCCC
GTGTTGTGGATGCTATCTACCCTGGTGAATTATCTCCTTGGCAGTTGGCG
CACGCGTTTTGTCATCGCTATGGTGCAGCTAATGTGTAAAATCCCATTCC
GCCTCTCCATCCCGCGCGCGTCCTTGGATTTGTCCGTGGACATACGTGCC
GACGTGGTAGGACTTACTATTGGAAAAGTTCCATGAGGATAGTCGTTTTC
GCACCTCTTTAAAACGTTACTCTAGCGTAGATCCATATCACTGCCTTGTA
AGGGAGACCATTAGACGAGAAAAAACGTCGGTAATTGAACCAAAAGATGC
TCCCTATTAAATATTCGCATTTTGATGTTGATACCGGTGAGTATTGGCGT
AATACATGTGTACAGTTCTAAGGTAATGATAATGGGTGCTGGCCGTCCTA
GAGCGGCGCGCACCCACCGTCACACCAGCTAATCGTTACTGGTATCAACA
TGCGGTCAAGAAGAATATTTGGGGTCGAATACCAGGGGTGGCAATATCAA
TTGACCTCCCTTGGAAAACATCGAAGGTAGCATTGCGGTACAGGGTTTTG
TCTTGCATTAAAAGCACTGCGCCAGCAGAATCAGGAGAAACTCCCGGGTG
TAGAGAGTGGGGTGTGTCGCCGATTTTCGCGTTAGTATCGCCTTCGTCGA
TGAGAATTTAGTACAGTTAGCTGAAAAAACGGCCTGTACGCGTGCTTCTC
TCGTAGGTTGGTCGTTGCGATGAAAACGTAATCGCAGTCTGATGAAGCAG
TAATCTTACGTTTATCAGTTCCTCGTTAGAGTACAACAGGGTTTGTGTTG
TGCGAAGGGAAGTAATTGGAAGAGGACATAATCATACCTAGGTACGCGCG
GCCAAGAAGAAGCCGAAGCCCCCGGTGCTGTTCAATATTCATAGCAACAC
TAATCGGTCGTGATTCACAGCTATCTAACGTCTGTCTAATATGAAGGACT
TGAGGATTGCGACAAGAGGAAACTTCACCTTGTTGCGCACATTCGACAGT
ACAAAACCAGATCGTGCTTTGTTTCTTATAGATCTCTATTCTGCTCTCTT
TTTCGCAAGCGCCTTGGCCATTATTTGATGTTCTGACAAACGCTTTGGGA
AAGTCGTTCTACCCCATAGAGGCAACTAACACACCTATCGCAAGGACGTT
CTGCTTTTTACCAGCACTTTTTTTTCACCCAGTACAGCGTTTTGCTACAC
ATGCTGCTTCACACAATCGACAGCTGGTTAGATACCTTAATATCGTAATC
AAGTATCCTCTCTAAGCCATTAGGTTTGTTCGTGATGCCCCATGATCAAT
CACAACTACTATCGGAACGGGACAGATATCCTACTTCCCGCTCCTTGCCG
CCGACGAGGACAGCGACCATCGTTACTACCTTCGCCAACGACCGCACCAA
CCCCATCACCACCACTACACCTACGACATTTCAACAGCTCCCAGATACAC
TCCCAAGCCCTCAAACAACGTCTCCAGTAGCGTCAGCGGCGCTACCGGCT
ACTTATATCAAGGCCACAGCAGTAGTAGCAGGGGTGGATCCGCGAAATCA
TTCCGCCACCCGGTGAAAGTAGCAGCAACTCTCACCACTAACGGTTCTCG
CCCCAACGGTACTATGAACAACACCTCTCCTTCTCCCGGGGTCGTTTCAG
CGGCTACTACAACGAGCAACGCTCATTTCGTGACGAAGCCGATGATGCAA
AAGCGAGAGCGAGGAGTTGGGCAGCCGTTGCGCGCACATCCCACTAATGC
CACTGCGGCATCTGGTGGAGTGATCCATTCCAACGGCAACAATGCCAGCA
GCGGTGGTGGCAGTAGTTCTTCCACCGTTCTCAACGGAAAAATAGACCCT
AGCGCCGGCGGAAGCAGTCCTACTCCCAATGGGACTCTTGTTGATGGTTC
GGGCGGGAGGACCCTGGGCGTTGGGACGAAAATGGCAGGAGCTGGTGAGG
GGTCAGGTGAGCTGTCAATGAAGCGGGTGTCTTCAATGTTAATATTTTTC
CCTTCTGCATGGGCGTCGAAGGCATTCTTGAAGGCGATCACATGAATGCC
ATAATCCAATTCACTCGTGATAAATCCGAACTTGCCGCTTAGAGCTAGTT
CTAGAGACAGCGTTTTGGCAGAAATGATAGAACCGGGAAATCTGGGAATT
TCGGTTGAAACGTGAAAATAACCGAAATTCCCGGAGTCCGAAGTTCCTGA
CGGGGCTGAATGGAGTATTCCACACATGCGACGTTGCAGTTTTTGACCTA
TCCGATGCGCATCATTGCACGGATCATTTCTAGTGATGCATAAATGTCGT
TACGATGCGTACATGCTTGTCCGTTGCTGATGCACACGCTACGAATCATC
AGCACAACTGATCCTTACAACCCCTCTGATGCATACGTGTTTGTCCACTA
GCGATGCGTAGCCTACGCATCATTAGTACATTGTTGCTCACGGGTTATAC
GTATGCCAAATTGTTCCGTAAGCATGGGAAGAGCCGGAGCCATACGCCGT
AATGTTCTTCATGTGTGGGAAGAGCCTGGGGTCATAGCCGGCATTTTTCC
GTATGTGTGGGAAGAGCCTCCACCGTACGACCTGCATTTCTGTTTCGGAG
TGAAAGTTGAATCTGACACATGACAAACGTCGAGTCCCGTAGTTGTTGTG
CGCAGAGTCATGAATTCCTGTTCGTGCTGCATGTATTGAGTTGGGTGTCT
GAATGGCAGTAGCTCCCTATCCCTCTGATGACGCCAAACGCGCTGATCCC
GTTTGTTCAGGCGGGAATCAGGTGGGCACACGCGAGGCTTAATACGCCTT
GTGCTCTCTCTCTTATCTACGTGGCATGTAGAGTAATACTTCTTGTACCA
TCTATCCATGATGCGTGCGTGACGTAGTATTCGTACACGTTTGTGGAAAC
GAGGCCGTTTGCACAACTAGTACGACCCGTACATGAATTGACGATCCATG
CATATTTGCCTACTGATGATCCGTACACGCTCTAAGATGCGTACATGTTT
GCCACTCCATAGATGGTCGATTTTGGGAAATAGCCATTAGAATTTTCCCC
ACCACGGAACGCGGCACCTACTATAGCGGCGATAAAGCGGCGAAAGAATT
CGATTCTTACGAATTGCACAGGCGATTGATGAGGGCTCGTGGATCCTCAG
CGATCGGGATAACGATTACTCATTCCACATGTTGTTCGGCATGTCGAGCG
AAGGTGCTTCCGATCACACATCGTTAGTCTTCCATAGCTGCCTGGCCTCA
GAACAGCTGTTTTTTTTATTCACACAACCAAAGCATTACTGTTCTGTTGG
TCGTGAAGTTCGAATAGCATGCAATACACGCAAAAGGCGTCTCTGCGGCG
GACCGTAAAACCTGTCCGATATATTTTGCTGCTGTACGCTGGTACGGTCT
CCTCCAAGTCTGTGTAGTCGTAGGTGTACCCTGGATTTTCAGATGATTCT
TGTTTATCATTTTTGTTGCTCTCCTGAGCCCTCTTCTTTGGTATCCTTCT
TTCTTGGTTTCTCTGCTGAACTCACTGTGTGGATCCTTGGCTAGGTAGAT
CAGGATGGAAGATGGAAATTGAAGTGAGTTAGTGGGGGGGGGCAGTCCCT
CTCCCATGAAATCGATCCAAAGTTCGAATATCCTAGCTCCTGCTATTCCA
GAAGCTGTATCTAGAACCGGGAACGTTCCCTCGAAATTCAGGGCCGTTCC
TTCTGGAACATATCGGCTACGGTGTTCCTATTATACACCGGAATACATGA
CAACTACAGTGACAAATGACTTGAACTGACCAGTGGAGCACATAACTCCA
TCAATCCGTCGTATTTTGTGAATACAAATGAACAGCACAGTTAGACCCTC
TGTTATCACATCGGAGTGCAAACGTGTTTCACACGCGGCTGTCTCGAGAA
CGGAGACCTTCCGCCGGTCGAAAGAGCCCATTAATCGACAATTAGATCTC
TTGAACATCTTTCCAATGATGCACACCTCCCGTTGGCAGTAGCTCTAGAC
GCAGTGGTCGAGATAATCGCGTTTGTAAATCCTTTGTACCTCCTTGCGGT
CTCACAGAGTTTACAATATTAAGGTCCGATGTAAGCGTTAGCATAGTAGT
TGTCACAGTCTACCCAGCTTTACGAGTCATTATCTAATATGATTGTTTGG
GGAACCTCGCCTACTTCGTGGTGCCTATCATTGTATTCGCTGTGCCTTGA
TTTTTACAATTTCAGATGCGATCCGGCAACAAGAAACCAGTCAAAGAGAA
ATGGAGTTTCCCAGTTTTGAAATTCCCAACAACTTCCCCTGAGAAATTTG
TGTTTACCTGGCGCCCCCACACTAATTCCTGTACATTCAATTTAAGAAAC
TCGCATTTCGGGCGAGGCTATATTGCTAGGTTTCGAACCTTATCTCAAAA
TAGGAGTCCGTTATCAACGGGCGGTACCTGTAAACACGGAGTCCTAAATA
TAACATACATGCTCTTTCCCAATTCGATTGCTTGGGGGCCTCGCTTATTT
TCACGCCTTTAAACTGCGGTGTCAAAAAAAGGGGAAAAAATGAGCAAATG
TTTGATGCGTACTGTATGGGGCAATATGTCGCCGCATGTCACTTTCCAAT
CTAATCAGAGAGTCTATGAATACATGTCGTTGTCCAACAGGTGCTGCAGC
ATCACCCTTTGTCATGGGAGGACGTAAGCCATTCGCACCTCGCTGCCTTG
CTCTAGCAACAGACGCCGGGACCCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2287:8047..14173+

>mRNA_H-paniculata_contig2287.6109.1 ID=mRNA_H-paniculata_contig2287.6109.1|Name=mRNA_H-paniculata_contig2287.6109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at H-paniculata_contig2287:8047..14173+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGGACATAGTGGCCGGCCACGGCCGTCGAGTGCGACGGATGGCGGTGT
CGGGGGGGGACAGAGAGGACATAGTGGCCGGCCACGGCCGTCGAGTGCGA
CGGATGGCGGTGTCGGGGGGGGACAGATATCCTACTTCCCGCTCCTTGCC
GCCGACGAGGACAGCGACCATCGTTACTACCTTCGCCAACGACCGCACCA
ACCCCATCACCACCACTACACCTACGACATTTCAACAGCTCCCAGATACA
CTCCCAAGCCCTCAAACAACGTCTCCAGTAGCGTCAGCGGCGCTACCGGC
TACTTATATCAAGGCCACAGCAGTAGTAGCAGGGGTGGATCCGCGAAATC
ATTCCGCCACCCGGTGAAAGTAGCAGCAACTCTCACCACTAACGGTTCTC
GCCCCAACGGTACTATGAACAACACCTCTCCTTCTCCCGGGGTCGTTTCA
GCGGCTACTACAACGAGCAACGCTCATTTCGTGACGAAGCCGATGATGCA
AAAGCGAGAGCGAGGAGTTGGGCAGCCGTTGCGCGCACATCCCACTAATG
CCACTGCGGCATCTGGTGGAGTGATCCATTCCAACGGCAACAATGCCAGC
AGCGGTGGTGGCAGTAGTTCTTCCACCGTTCTCAACGGAAAAATAGACCC
TAGCGCCGGCGGAAGCAGTCCTACTCCCAATGGGACTCTTGTTGATGGTT
CGGGCGGGAGGACCCTGGGCGTTGGGACGAAAATGGCAGGAGCTGGTGAG
GGGTCAGATATCCTACTTCCCGCTCCTTGCCGCCGACGAGGACAGCGACC
ATCGTTACTACCTTCGCCAACGACCGCACCAACCCCATCACCACCACTAC
ACCTACGACATTTCAACAGCTCCCAGATACACTCCCAAGCCCTCAAACAA
CGTCTCCAGTAGCGTCAGCGGCGCTACCGGCTACTTATATCAAGGCCACA
GCAGTAGTAGCAGGGGTGGATCCGCGAAATCATTCCGCCACCCGGTGAAA
GTAGCAGCAACTCTCACCACTAACGGTTCTCGCCCCAACGGTACTATGAA
CAACACCTCTCCTTCTCCCGGGGTCGTTTCAGCGGCTACTACAACGAGCA
ACGCTCATTTCGTGACGAAGCCGATGATGCAAAAGCGAGAGCGAGGAGTT
GGGCAGCCGTTGCGCGCACATCCCACTAATGCCACTGCGGCATCTGGTGG
AGTGATCCATTCCAACGGCAACAATGCCAGCAGCGGTGGTGGCAGTAGTT
CTTCCACCGTTCTCAACGGAAAAATAGACCCTAGCGCCGGCGGAAGCAGT
CCTACTCCCAATGGGACTCTTGTTGATGGTTCGGGCGGGAGGACCCTGGG
CGTTGGGACGAAAATGGCAGGAGCTGGTGAGGGGTCAGGTGCTGCAGCAT
CACCCTTTGTCATGGGAGGACGTAAGCCATTCGCACCTCGCTGCCTTGCT
CTAGCAACAGACGCCGGGACCCGAGTGCTGCAGCATCACCCTTTGTCATG
GGAGGACGTAAGCCATTCGCACCTCGCTGCCTTGCTCTAGCAACAGACGC
CGGGACCCGA
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