mRNA_H-paniculata_contig22812.6089.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22812.6089.1
Unique NamemRNA_H-paniculata_contig22812.6089.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22812.6089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22812contigH-paniculata_contig22812:1294..2220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size915
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22812.6089.1prot_H-paniculata_contig22812.6089.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22812 1530..2087 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.8643515-UTR-H-paniculata_contig22812:1293..15291622929635.8643515-UTR-H-paniculata_contig22812:1293..1529Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22812 1294..1529 +
1691480945.5312912-UTR-H-paniculata_contig22812:1293..15291691480945.5312912-UTR-H-paniculata_contig22812:1293..1529Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22812 1294..1529 +
1622929635.9132423-UTR-H-paniculata_contig22812:2087..22201622929635.9132423-UTR-H-paniculata_contig22812:2087..2220Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22812 2088..2220 +
1691480945.562078-UTR-H-paniculata_contig22812:2087..22201691480945.562078-UTR-H-paniculata_contig22812:2087..2220Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22812 2088..2220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.8810372-CDS-H-paniculata_contig22812:1529..16631622929635.8810372-CDS-H-paniculata_contig22812:1529..1663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22812 1530..1663 +
1691480945.5410855-CDS-H-paniculata_contig22812:1529..16631691480945.5410855-CDS-H-paniculata_contig22812:1529..1663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22812 1530..1663 +
1622929635.8973432-CDS-H-paniculata_contig22812:1675..20871622929635.8973432-CDS-H-paniculata_contig22812:1675..2087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22812 1676..2087 +
1691480945.550496-CDS-H-paniculata_contig22812:1675..20871691480945.550496-CDS-H-paniculata_contig22812:1675..2087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22812 1676..2087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22812.6089.1

>prot_H-paniculata_contig22812.6089.1 ID=prot_H-paniculata_contig22812.6089.1|Name=mRNA_H-paniculata_contig22812.6089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp
MVRIPATTSCMTSSLYPSGQRPTRSALTDPPPSGITTPVRLVSTGFYSTS
DTLLSTYNSPFNLGMGVCSLRTLIHRGRHGRRRTSLACLTIGPNHPRDFP
FQTTPTVDLRLRSRSLGDVPLAVALSMLPSRRYVHSKFTLKDPELSRWSL
KNQPETQRSTLVTEYNYQAFCDICQCTRAIR*
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mRNA from alignment at H-paniculata_contig22812:1294..2220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22812.6089.1 ID=mRNA_H-paniculata_contig22812.6089.1|Name=mRNA_H-paniculata_contig22812.6089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=927bp|location=Sequence derived from alignment at H-paniculata_contig22812:1294..2220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTCTTCCGGGGCCACCCCGTGCGCCGTGGATAGTTTGCTCCCCCTCGT
GACCTTTGCCTACCGCAAAAGCCACATTTTTTGCGGACCTCGACCATTAT
CGCTATCCATAATCGGGCTCGAGATACCTCGGCCCTGGTGCACTGCTGCT
CTCTGTTGAACCGTACGGCGTTGTACGATGACCTATTCCCTACCTTGTTC
CTCGATGATATCTCGCACAGCGAGGGTGTGCTTGAAATGGTGCGCATCCC
CGCCACGACCAGTTGCATGACATCTTCTTTGTACCCTAGCGGCCAAAGGC
CCACCAGGAGCGCGCTCACCGACCCGCCTCCATCCGGCATCACAACACCC
GTCAGGTTAGTTTCGACCGGGTAAAACCAAAGGTTTTACTCCACGTCGGA
CACTCTGCTCTCTACCTACAACTCTCCCTTCAACCTTGGTATGGGGGTAT
GTTCTTTGCGAACACTCATTCATCGAGGGCGCCACGGTCGCCGACGAACT
TCACTAGCCTGCCTTACAATAGGGCCAAATCACCCACGTGACTTCCCCTT
CCAAACAACACCAACCGTGGACTTGCGGCTCCGCAGTCGCTCCCTCGGGG
ACGTTCCTCTTGCAGTGGCCTTAAGTATGTTGCCCAGTAGGCGTTATGTT
CATTCAAAATTCACACTAAAAGACCCAGAACTCTCCAGATGGTCATTGAA
AAACCAACCAGAAACACAACGTAGCACATTGGTTACAGAGTACAACTACC
AGGCCTTCTGTGACATATGCCAGTGTACCCGTGCTATACGGTGATGTTGC
GGTCATTCCGTGGTTACTTTGAGGTTATGATGTGGTCATCAGAGGTCCAG
GAGCTATATTAGGAGTTGGGGTTTCATCTTTGCCGTGGAACGCCCCGAGC
ACTGTCATCCGCTACTGCGCCGTTATC
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Coding sequence (CDS) from alignment at H-paniculata_contig22812:1294..2220+

>mRNA_H-paniculata_contig22812.6089.1 ID=mRNA_H-paniculata_contig22812.6089.1|Name=mRNA_H-paniculata_contig22812.6089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at H-paniculata_contig22812:1294..2220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCGCATCCCCGCCACGACCAGTTGCATGACATCTTCTTTGTACCC
TAGCGGCCAAAGGCCCACCAGGAGCGCGCTCACCGACCCGCCTCCATCCG
GCATCACAACACCCGTCAGGTTAGTTTCGACCGGATGGTGCGCATCCCCG
CCACGACCAGTTGCATGACATCTTCTTTGTACCCTAGCGGCCAAAGGCCC
ACCAGGAGCGCGCTCACCGACCCGCCTCCATCCGGCATCACAACACCCGT
CAGGTTAGTTTCGACCGGGTTTTACTCCACGTCGGACACTCTGCTCTCTA
CCTACAACTCTCCCTTCAACCTTGGTATGGGGGTATGTTCTTTGCGAACA
CTCATTCATCGAGGGCGCCACGGTCGCCGACGAACTTCACTAGCCTGCCT
TACAATAGGGCCAAATCACCCACGTGACTTCCCCTTCCAAACAACACCAA
CCGTGGACTTGCGGCTCCGCAGTCGCTCCCTCGGGGACGTTCCTCTTGCA
GTGGCCTTAAGTATGTTGCCCAGTAGGCGTTATGTTCATTCAAAATTCAC
ACTAAAAGACCCAGAACTCTCCAGATGGTCATTGAAAAACCAACCAGAAA
CACAACGTAGCACATTGGTTACAGAGTACAACTACCAGGCCTTCTGTGAC
ATATGCCAGTGTACCCGTGCTATACGGTGAGTTTTACTCCACGTCGGACA
CTCTGCTCTCTACCTACAACTCTCCCTTCAACCTTGGTATGGGGGTATGT
TCTTTGCGAACACTCATTCATCGAGGGCGCCACGGTCGCCGACGAACTTC
ACTAGCCTGCCTTACAATAGGGCCAAATCACCCACGTGACTTCCCCTTCC
AAACAACACCAACCGTGGACTTGCGGCTCCGCAGTCGCTCCCTCGGGGAC
GTTCCTCTTGCAGTGGCCTTAAGTATGTTGCCCAGTAGGCGTTATGTTCA
TTCAAAATTCACACTAAAAGACCCAGAACTCTCCAGATGGTCATTGAAAA
ACCAACCAGAAACACAACGTAGCACATTGGTTACAGAGTACAACTACCAG
GCCTTCTGTGACATATGCCAGTGTACCCGTGCTATACGGTGA
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