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Homology
BLAST of mRNA_H-paniculata_contig228.6082.1 vs. uniprot
Match: A0A6H5JSK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK8_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 3.740e-21 Identity = 41/81 (50.62%), Postives = 62/81 (76.54%), Query Frame = 2
Query: 152 VAMREKKQECRVNQCNHLLPLEAQNCINECISPVCYRKTYAEPLEDGEINADLANSFTNCARRELRMANSVKKASGRKAVT 394
+++ ++K+EC C HL+PLEA+NC++EC+SP CYRKTYAEPLEDGEIN L+ +F CA+R+++ + K+ S R+A +
Sbjct: 32 ISVYDRKRECETETCGHLVPLEAKNCVHECVSPDCYRKTYAEPLEDGEINLQLSKNFMACAQRDIKNSMVAKRRSDRQAAS 112
BLAST of mRNA_H-paniculata_contig228.6082.1 vs. uniprot
Match: A0A482RSH6_9ARCH (DUF4787 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSH6_9ARCH) HSP 1 Score: 71.6 bits (174), Expect = 1.390e-11 Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 2
Query: 140 PQVNVAMREKKQECRVNQCNHLLPLEAQNCINECISPVCYRKTYAE-PLEDGEINADLANSFTNCARRELRM 352
P + A R KK +C C+HL+P EA NC+N+C S CY + Y E PLEDGEI+ +F +C R E+R+
Sbjct: 21 PNKDKAWRLKKVKCEKEDCSHLVPEEAYNCVNKCTSEKCYNEVYKESPLEDGEIDNARNRAFLSCLREEVRL 92
BLAST of mRNA_H-paniculata_contig228.6082.1 vs. uniprot
Match: A0A7S1VMC4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VMC4_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 2.120e-8 Identity = 27/68 (39.71%), Postives = 42/68 (61.76%), Query Frame = 2
Query: 143 QVNVAMREKKQECRVNQCNHLLPLEAQNCINECISPVCYRKTYAE-PLEDGEINADLANSFTNCARRE 343
++++ ++ + C C H++P EA NCIN+C+S C+ + YA PLEDGEI+ A F CA+ E
Sbjct: 34 RIDMEVKARTVFCEREDCAHIIPEEAMNCINKCVSEQCFTEIYAAIPLEDGEIDLRRAREFDKCAKYE 101
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1311 |
| Cds size | 366 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig228.6082.1 >prot_H-paniculata_contig228.6082.1 ID=prot_H-paniculata_contig228.6082.1|Name=mRNA_H-paniculata_contig228.6082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MPQVNVAMREKKQECRVNQCNHLLPLEAQNCINECISPVCYRKTYAEPLE DGEINADLANSFTNCARRELRMANSVKKASGRKAVTSNKPVDAAVFVESN GESQPTFGVSLSEGSAREGTG* back to topmRNA from alignment at H-paniculata_contig228:28422..35077- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig228.6082.1 ID=mRNA_H-paniculata_contig228.6082.1|Name=mRNA_H-paniculata_contig228.6082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6656bp|location=Sequence derived from alignment at H-paniculata_contig228:28422..35077- (Halopteris paniculata Hal_grac_a_UBK monoicous) TAACGCTTCTATTGATCACGAACCTGACAATAGTGGAGTCTAAGAGGAAA
GCCAAAAAACAGGTGAAGTGTAAGCTTTACCTTAATTTCGTTTGACTATA
TCTATAGGTCCATAGATCTGTAGACCTGTACTGTCTGCTTCGGACTTGTA
GTTTAGCGTACGTCATCTCTTCCTCCAATGACAATGGATATGGGAACAAA
TACAACCATATATTTTCGCCTAGCCAGCGATCTCGGGCGCAATCACACAC
ACCTACAGGGCCGATAAGCCAGGAGAAAAACTCCTGTAAGTACAGTTCGC
GTTGTTTCGGAACAAAATACGCTTTGACAGTCCCGCCTCGAAAAAAATGC
AGTCTTCTGTATTCTGTACGGCTAAAGACGTACGTAAGTTCTAACGAACA
GCGAGCAAGTCGTGAATATAGTATCACTACCGTAGATGCTCGCGAATACG
CGAGGAGAAGGTACCGCAACCAGCAGAGACAGGCTTCCTCGCCTTCAACC
TGTGGCGATGAGCGTTGTCAGTTGCAGTCATTGATATGGATCGATCGAGC
TTCCCATTCACCCTACTCTTATCGAAGAAAGGGTGGAATCAGGATGCGAC
AAGCGAGAGATGTTATCTCCAGTGATGTTTGGATTTCTCCGCAGGGGATA
GCAACGACCGAATGAACAGAATCCAACTTCGAGCCAGCCTGTGTAAGTAA
ATATTTGGTGTCAGAAGCACGGGGTGCGTCTCGCGTTTTTAGGCTAGAAT
TCATTTTTGCTGCCTTTTTGGTCTACTTCGCATTCAAGACTATCTCGAGC
CACAACAATCGTCGTTTAAAGTGAAACTAGTGTACAGAGGCATGTTGTTT
CGGAACGAAAAATGCACCTGACAGCTCCCCTGTGAAACAAGGTCGCATTT
GTAAGGGGGGGGTATCTTTTGGCTGGTGGCACTGGGAAATCAAGATTTTT
ACAATGGTGGTACACGTTCTGGCCAATTGCAAACGTTTTGTAAATCAATC
CCCACCGGCGCTAAGGTCATGCCTTATAAAACTCAACGAATGAATCTCAG
GAAACGATTTTGTTTCAGGACCTGTATTAAGTCTTGATAAATCCCCATCA
CATCCCGCTACGCTTTGACCATACAAGGAAAGTGATTGTATTATCTGAAA
AGCGATTTTACCCTGAATCGATTCTCTAGGAAAACAATAATGCTGACCGA
AGGCGGGAATTTGTAAAGGAACGCAGATCTGCAATCGTTACTGTAAAGCG
CTTCACTGCACCTGTTACAACAAAACATGGCTCGGGCTGTGACCCTTGAT
CAGCTGAGCACCGTGTACTTTGGTTCGGATAGAATCCGTCCCGAAATGAA
GGGAAGCAGATTGTTGTACTGAGCATCCACCATGTCATTGGCCGTAGGCT
ACAAGCATGGTTTTCTTGCATAGCAATGGCCCCATGAGGACGTGATTCCT
TTGGTTTTGTGCCCGGTGTGCGACTTTGTTTGTCGTGCATGGTGCTGAAT
AGCACATGACTCAGGGTGCCCTTTGTGCTTTGCGCTTAGGGTCGCATTTG
CAGTCAGGCGTTGTTCCTGGAACCATGCAACTCCCATATTTGTTGTCTGT
GCTATTTGCGGCTTTTTACACAGCAGCAGCTCCCTATACCTGCAGATGAT
GTGCGATAAATCTTGTCTCAGCATAAATTCTAACCTGTTTACCCCCCTCT
CGTTTCAGGTAAAGATAAGATGGGGATTAGATGAGGACCGGCGTCGAAAG
GGTGAACTTTTTGTTCATGTATTCTTTGGTAAATGCCGCAGGTGAACGTT
GCCATGAGGGAGAAGAAGCAGGAGTGTCGGGTCAACCAATGCAATCACCT
GCTTCCTCTTGAGGCCCAGAACTGCATAAACGAGTGCATATCGCCAGTGT
GCTACCGGAAAACGTACGCAGAGCCGGTAAGACGAAGCAAGAGAGAGAAA
AATAGTGATAGTCTTGATACAGAAATAGAGTTGGCCGCCCTTTGTTTTTG
GATGGATGCTGTCGATTCAAACAAAGCTGCAGGCGAAGAACCAAGGCGTT
ACACCACAACCCGAACTGGTGTCAGCCGAGGAATTCTGAGTCAACTAGCT
GTGTCATTGCAGGAACACGTGCATGGAGATTAATAATATAATCAATCAAC
AAGTTTTTCATGTTACTCTGATCGCATTTGAGGGTGTTCATAGCGCGCGC
GATTCTTCTGAAATTTCGTCGTTGGTTTCACTGTCTTGAAGCATCCCCAT
ATTTGCGGGAAGTAGTCATGAAACATAACATGTATGGGATTGGCTTCAAT
GAATTCGGCGACATACATTTAGACTACATCGTTGTGAACAAGATTGATTT
GTAAACTAGGACAGTACAGGCCACCAACTCAACACGCAAGAGCACTATAG
GGTATGGTTGGTGGTCAATTGCCCGTAGTTCACTGCGTGAAGGTCTTCAC
CTCGCACGAGCAGACGCAGATGTTTGAATGTGTAGACGGTGCCCAAAATT
CACGTTATGATTCGATTTTGCGGGGGATGTTGAAAAATATGTCATAATCA
AGCAGAAAACGACCTGCGCGACACTGAAGGGCATCAAAACAAGTCCTGGG
TGTGTGCTCTATGGGACATGAGTGATGGTCCTTTGTCGGTGATTCAGGCC
TGAGAAACCGTTCAACGCTCTCGCGACAGCATGGAAAAGAGACATATGAT
GCCCAATATATTTGCTCTTGTAACGGTTGCACTCAGTTCCGTTGACTTTT
ATCTATATACTTATATAACACGAAACTGAGTGTGTGCAGACTGTTGGTCC
TCCGCGTGTTTCGTTCGAAAAATCTAGTATATATGACGAAAAAATTTCGC
CATGTTCAAGTCGATCCCATGTGACAAATTGATTACAGCAGCTGGAGATA
CGTTGGTGAGGCTGGTTGGGTTTGATCAGCATGTCGAAGAAGTGGAATAC
TTTTGGTTTGATGCGATTCATAGTATACTAATTGGTCTTAACATTGTCCG
TCTTTCAAGTCTGGTGGCGAAATACAACATCGGAACCGAATGCACTTGAG
CCAGGGTGACACTATCACTCTCACAAATAATTGGCTCCCACTGTCGGTGG
CATGCGTATTGTCTGCGCCACCTGGTGTGGGTTGTGATCTCGGGCGGTGT
TTACTAGTGCTATCGAGTATCTGGTACTTGGGAACGGCCGTACTACGTCG
ATAGCACTACATTTCGTTCGCTCTGTGAAGCTAAGCGATGTTGGGCCAGG
TTAGTACCACGGTGGGGGACCACGTGGGAAGTCCTGGTGCTATTTCTTCT
TCAGTTTCTCTTTTACTCTTCGCCTTTTCGTTGATCCACTTTTCCCGATG
ATGCTCCTTGACATGGCTTTTTCCACGATGCTGCTGCGTGTGCCCTATGA
TGAACGCCTCAAACACAACTCTGAACGAGACATGTTTCGTGCCCCATGTA
ACTTTGTGCGTGACAATACTTGCGTTGTTGTTTTTCACCTACCGAGTTGT
GTACGCACTGTTGCGGACATGAACAAGTGGAATTTTCCCCATGAAAAATG
CCAAGACGTCCATATAAAAAATGTATCTGCGCGATCAAGGTTACAATGGG
CTAGCTGGTATCGCGATGCCAATATCGCACGTGACTGTAGGGTTTGGGCG
CCAAAAAATGTCTAAACGGGTGTGTGTTTAAGAGTGGCCGCTGGCTGCGC
TTCGGAGCCCTCGATCGTTTTGATTCGAATACAATCTACGGTCAACGAAC
TACGCTTCTCTCCCTCTTGTTGATATCAGTTATGTGCCACAATTGTTCGT
AGCGAGGGCAAAGGGTTGTGAAGCAGCGGGGTAAAATCGCGCGAAGTGAA
CAACGGTCATAACACTTCGATAGCATCATGTCGCGTCCGCTCTGAGAAAG
TAAGCGCCTGGTTAGCACTACGGTGTGGGACTATGTAGGAAACCCTGGTG
TTGGTCTTTCTCTTTCTCTCTTTTACTCTTCCCCTTTTCGTTGATCCACC
TTACCTGATGAGGTTCCTTGATAGAAAAGACGTGATTAGGCTTTGCGCGT
GCAAATGCAGCTTTATTGGGAGATCTGGCGTAGTTTTCGAAGCTCTCACG
AGCACGTGCAACAGTTATACCGGACCCGTTTTTTTTAAGTTGCCACTAGG
GCGGGTAATTCTGATGAACGCATCCAACAATATAAAATTATTGAGCCGAC
TCTGTAGCTGTCCGGCTGTCCGGCGGTCTTGGAAAGCCACACAAGACCAG
TGAATAGTACAACTTACCGTCGAATACTGTAGTGCTTGGGTTGGTGGGGT
GCTATTGGCTCGACCTAATCGAATATCAATGCGTGCTTGTCTTCATGTGC
TGACCTGTGTTTTGGAAACAGATTTGCTGCAGGAAAAATTGTTTCAGGAT
CTTCCCACCTACAGTCAGTACCGACAAGATTCATGGAGTAAGAGTAGTCT
CTTGTGTGTATTCAGTCCAAATGGTTCGCTGCACGTTGTATCGGATCAGA
ATCATCGTATACGAAAAGTACCGTCATCCCACATCCCGTGTATATGTCCT
GAGCATGACGTATGTAAGGGCTCGTCAGGAATAATCAGGTTCAGTTTTCT
CGCGACTTGTGCATTTCCTGCGCATTCCTTTTTGCTCATCAGCCAAAAGC
GCGCCCTTTTGCGGTTGTCAGATTTCGATGATACGCGTGGGATGCAATGC
AGGTGTGGTTGTCGACACGCACTATTGTATACGGTCGTAAATATCCTTGA
TCCGAGAGCGCATAGGACTACTGTCGGTTTCACGTAGCTAGTCTCTCATA
TTGGCTTGTGGGCGCTGTCGTGTGTTTAGCTTCAATTATCTTCATGAGTG
TCTTCCAGCGTCGAGTGTATGTACTGCACAGCCTCTCGTGTCGTCGAATG
TGGTTGCTGTTATAGCTCCACCAGTATGGACGAACACGAAGGACAAGGCT
TCCATTGTTCAGGAGAGAAAAGCGGCCAAAACACACACATTCGCTTTGGC
ATGTTTACTGTGCTTCCTTTCCTGCTCGCCCTCGGACACAGCTCGAGGAT
GGAGAGATCAACGCTGACCTAGCTAATAGCTTTACAAACTGCGCCCGGAG
AGAACTACGTATGGCAAACTCTGTCAAGGTAAGATTGCGTACAACGGACG
TATGCATACATGCAATGGAGGCACCCCTGCGTTGTCTTCGTTTTTACGAC
TTCTGGTTTTGAGATTGATGTGTTTCTTTCCAATATGACCGTTGCAGTTG
CGTTTAGTTTCGCCACTTTACACGCTGTGGTGCCTGCTTCCCTGAAAAAT
GGTTGTGCTGTGTTTAATAGCCAAGACTGATATTGATTGCTAATTTACGC
GCAATTGATATGTCGGCGTCCGGGCACTGTGTGCTTAAAATTTACCCCCT
ATCGTTAAGTTTGTTCATGGTTATCGGCCGGCCGGTACTAGCAGTGTTTC
GTGTTTCATCACGGTCGTAGACCAAGTAAAGAACGTTCCATGTGCCCAGG
GCGGTGTCCGTTCCCTCAGATGCGGTTCTTGTTCCAGTGGAACGCTGTTT
TATCGGTTTCACTTCTTGCACTATTTCTCTGTCCGCCACTCCCTGCCGAA
CGTAATGATACCGCCTCTCCACGCAACCTGACACCAGCTCTCTTGGTGTC
TACCTGCGTGCTTTTGTTCGGATGCGGTTGATTTCTCTCTCGGGGTGGCT
GTTTGACAATAGAAGGCATCCGGTCGAAAGGCCGTCACCAGCAACAAACC
CGTGGATGCAGCGGTCTTCGTGGAGAGTAATGGCGAATCGCAACCGACCT
TCGGGGTGTCACTTTCCGAGGGTAGCGCGCGGGAGGGCACGGGGTAAGAA
AATTAAGAAAAAGGGGGGCAGGAGGGTGATGAGCTGTATGATGATGACGA
TGATCGGGAGGAAGAGGAAGAATACGAAGAGGAGGACAATGTTATGAAGG
GCAGGGACGTGGAGGCGATGCAATAGCAGTGGTTAGCCCTGGGGGGGCGG
TGGCGAAGCTTGTTCACATCCGCGTATTTTACCTCACTGGAATGGTTCCA
TTGCCTTGTTGTGTTTGTGTTTAGATGAGGTTACACGTAGCGATGAGCCC
GACGAGGCTCTAACTTCTGTTGTGTTTTTGGTTTGCTCATTGCTGGATTA
AGTAGGGATGTCGGCTGACACCAGCTGGCGGGTGGCTATATGCTCTCTCG
TTGGTTCTCGTCATGTGCTTACTTTTGTCGAACAATATGGCTCATTACCA
TTCGTTCTTGGTTGTGCATTTTACAGGAGGGCTTGTGGATTTCGGCACGA
AATTCGCACAACATTCGGGCTTGCGTCCCTTGTCTGCAGTCTGTACTGCC
GCCGCCGACGTCAGCAAATTTAGCCTGTTGTTCCCTTGTTTTTAGTCTGT
TTGCGTTTGTGAAAACGGCGGGCGTGCCACTATTTTTATCCAATATGGTG
TAACTTCCTCTCACACCTCACGCTTTTGGCTTGTGCAGCAAAGCACTTTG
TGCGAAAAATAGTCCCATGCCTGCAGTATAATATGTTTGTTTTCGGGTCG
TGATGAGTAAGGCGTGTATCGGGAGCGACAATGTCTACCCCATGGAATCC
CGGTTCTACACGAATATATTGATCGGCGACCCGATCAAGAAGGAGTAACA
TTGTAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig228:28422..35077- >mRNA_H-paniculata_contig228.6082.1 ID=mRNA_H-paniculata_contig228.6082.1|Name=mRNA_H-paniculata_contig228.6082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig228:28422..35077- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGCCGCAGGTGAACGTTGCCATGAGGGAGAAGAAGCAGGAGTGTCGGGT CAACCAATGCAATCACCTGCTTCCTCTTGAGGCCCAGAACTGCATAAACG AGTGCATATCGCCAGTGTGCTACCGGAAAACGTACGCAGAGCCGATGCCG CAGGTGAACGTTGCCATGAGGGAGAAGAAGCAGGAGTGTCGGGTCAACCA ATGCAATCACCTGCTTCCTCTTGAGGCCCAGAACTGCATAAACGAGTGCA TATCGCCAGTGTGCTACCGGAAAACGTACGCAGAGCCGCTCGAGGATGGA GAGATCAACGCTGACCTAGCTAATAGCTTTACAAACTGCGCCCGGAGAGA ACTACGTATGGCAAACTCTGTCAAGCTCGAGGATGGAGAGATCAACGCTG ACCTAGCTAATAGCTTTACAAACTGCGCCCGGAGAGAACTACGTATGGCA AACTCTGTCAAGAAGGCATCCGGTCGAAAGGCCGTCACCAGCAACAAACC CGTGGATGCAGCGGTCTTCGTGGAGAGTAATGGCGAATCGCAACCGACCT TCGGGGTGTCACTTTCCGAGGGTAGCGCGCGGGAGGGCACGGGGTAAAAG GCATCCGGTCGAAAGGCCGTCACCAGCAACAAACCCGTGGATGCAGCGGT CTTCGTGGAGAGTAATGGCGAATCGCAACCGACCTTCGGGGTGTCACTTT CCGAGGGTAGCGCGCGGGAGGGCACGGGGTAA back to top
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