mRNA_H-paniculata_contig22789.6073.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22789.6073.1
Unique NamemRNA_H-paniculata_contig22789.6073.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22789.6073.1 vs. uniprot
Match: D8LJA7_ECTSI (PITH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA7_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 7.620e-36
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 1
Query:   31 LTATRVRCLNESVPGGALNCLKPWDRRRDPEPRLESEEDDPELIIFVPFTQAVKIKAISVIGGREGTAPSSMKV 252
            +  TRVRCLNES PG  LNCLKPWD+RRDP+PRLESEEDDPELII+VPFTQ VKI+AISV GG EG+APS+MKV
Sbjct:   47 IDTTRVRCLNESAPGSGLNCLKPWDKRRDPQPRLESEEDDPELIIYVPFTQVVKIRAISVTGGGEGSAPSAMKV 120          
BLAST of mRNA_H-paniculata_contig22789.6073.1 vs. uniprot
Match: A0A835ZD87_9STRA (Galactose-binding domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD87_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.120e-29
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   31 LTATRVRCLNESVPGGALNCLKPWDRRRDPEPRLESEEDDPELIIFVPFTQAVKIKAISVIGGREGTAPSSMKV 252
            +  TRVRCLNES  G  L CLKPWD+RR+PEP LES + DPEL+I VPFT+ VKIKAIS++GGR+G APS MKV
Sbjct:   43 IDTTRVRCLNESAVGQVLQCLKPWDKRREPEPFLESNDGDPELLIHVPFTEVVKIKAISLLGGRDGAAPSKMKV 116          
BLAST of mRNA_H-paniculata_contig22789.6073.1 vs. uniprot
Match: W7UAE5_9STRA (PITH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAE5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.420e-21
Identity = 41/79 (51.90%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   22 FVPLTATRVRCLNESVPGGALNCLKPWDRRRDPEPRLESEEDDPELIIFVPFTQAVKIKAISVIGGR--EGTAPSSMKV 252
            F  +  ++VRCLNE+  G  L+  K +++RR+PEPRL+S +DDPEL++FVPFT+ VK+K+I++IGG   EGTAP+ +K+
Sbjct:   36 FAAIDTSKVRCLNENEIGACLHPFKLYNKRREPEPRLDSHDDDPELLLFVPFTRIVKLKSINIIGGHAGEGTAPTKIKL 114          
BLAST of mRNA_H-paniculata_contig22789.6073.1 vs. uniprot
Match: A0A7S0QYR0_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QYR0_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 4.470e-19
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   31 LTATRVRCLNESVPGGALNCLKPWDRR--RDPEPRLESEEDDPELIIFVPFTQAVKIKAISVIGGREGTAPSSMKV 252
            +  T+V  LN S P    N  +PWD+R  RD EP L S+EDDPEL+IF+PFT  VKI++I VIGG +GT+PSSMKV
Sbjct:   27 IDTTKVTVLNASNPDSLKNVFRPWDQRLARDVEP-LNSDEDDPELLIFIPFTSDVKIRSIMVIGGPDGTSPSSMKV 101          
BLAST of mRNA_H-paniculata_contig22789.6073.1 vs. uniprot
Match: A0A388L2G9_CHABU (PITH domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L2G9_CHABU)

HSP 1 Score: 85.5 bits (210), Expect = 9.250e-19
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   43 RVRCLNESVPGGALNCLKPWDRRRDPEPRLESEEDDPELIIFVPFTQAVKIKAISVIGGREGTAPSSMKV 252
            RVR LNE+V G A   +K W+RR D    +ESE DDPELIIF+PFT  VKIK+IS+IGG +GT+PS M+V
Sbjct:   34 RVRALNEAVDGSAKTVIKTWERRLDFSTYVESE-DDPELIIFIPFTADVKIKSISIIGGVDGTSPSKMRV 102          
BLAST of mRNA_H-paniculata_contig22789.6073.1 vs. uniprot
Match: A0A1E5V9K3_9POAL (PITH domain-containing protein 1 (Fragment) n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5V9K3_9POAL)

HSP 1 Score: 86.7 bits (213), Expect = 1.520e-18
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   16 APFVPLTATRVRCLNESVPGGALNCLKPWDRRRDPEPR-LESEEDDPELIIFVPFTQAVKIKAISVIGGREGTAPSSMK 249
            AP  P    +V  LNESVPG   +  KPW++R D     LES E DPEL+IF+PFT  VKIK+ISV+GG +GT+PS M+
Sbjct:   95 APANPFPCAQVVALNESVPGSVKSVFKPWEQRLDTSGGFLESNEGDPELLIFIPFTSDVKIKSISVVGGTDGTSPSRMR 173          
BLAST of mRNA_H-paniculata_contig22789.6073.1 vs. uniprot
Match: A0A250XL51_9CHLO (PITH domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XL51_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 1.840e-18
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   43 RVRCLNESVPGGALNCLKPWDRRRDPEPR-LESEEDDPELIIFVPFTQAVKIKAISVIGGREGTAPSSMKV 252
            RV CLNE+  G  +N  KPWD+R  P  R L S EDDPEL+I VPF  AVK+KAI+V+GG EG+AP+ +KV
Sbjct:   34 RVSCLNEAEAGTVVNIFKPWDQRLQPTVRPLCSNEDDPELLIHVPFDGAVKLKAIAVVGGLEGSAPAHLKV 104          
BLAST of mRNA_H-paniculata_contig22789.6073.1 vs. uniprot
Match: A0A5N5MDD8_9ROSI (PITH domain-containing protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5MDD8_9ROSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.890e-18
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   43 RVRCLNESVPGGALNCLKPWDRR-RDPEPRLESEEDDPELIIFVPFTQAVKIKAISVIGGREGTAPSSMK 249
            +V  LNE+VPG A +  KPW+ R    E  LES E DPEL++++PFT  VKIK+I++IGG +GT+PS M+
Sbjct:   28 KVSALNEAVPGSAKSVFKPWEHRLNSSEEHLESNEGDPELLVYIPFTSDVKIKSIAIIGGTDGTSPSKMR 97          
BLAST of mRNA_H-paniculata_contig22789.6073.1 vs. uniprot
Match: A0A7S4HIT9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HIT9_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 3.150e-18
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   46 VRCLNESVPGGALNCLKPWDRRRDPEPRLESEEDDPELIIFVPFTQAVKIKAISVIGGREGTAPSSMKV 252
            V CLNESVPG   NC KP+  R   +  LES EDD +LI+++PFT AVKI  I V+GG  G++PS +KV
Sbjct:   45 VTCLNESVPGSVKNCFKPYSERASTDKYLESNEDDEQLILYIPFTGAVKITNICVVGGSNGSSPSKLKV 113          
BLAST of mRNA_H-paniculata_contig22789.6073.1 vs. uniprot
Match: S8C4H6_9LAMI (PITH domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C4H6_9LAMI)

HSP 1 Score: 81.3 bits (199), Expect = 3.780e-18
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   43 RVRCLNESVPGGALNCLKPWDRR-RDPEPRLESEEDDPELIIFVPFTQAVKIKAISVIGGREGTAPSSMK 249
            +V  LNESVPG   +  + W+RR    E  LES E DPELI+F+PFT  VKIK+ISV+GG +GT+P+ M+
Sbjct:    1 KVSALNESVPGNVKSVFRSWERRLNSAEAYLESNEGDPELIVFIPFTSDVKIKSISVVGGSDGTSPAKMR 70          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22789.6073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA7_ECTSI7.620e-3679.73PITH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZD87_9STRA4.120e-2968.92Galactose-binding domain-like protein n=1 Tax=Trib... [more]
W7UAE5_9STRA5.420e-2151.90PITH domain-containing protein n=2 Tax=Monodopsida... [more]
A0A7S0QYR0_9CHLO4.470e-1957.89Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A388L2G9_CHABU9.250e-1961.43PITH domain-containing protein n=1 Tax=Chara braun... [more]
A0A1E5V9K3_9POAL1.520e-1854.43PITH domain-containing protein 1 (Fragment) n=1 Ta... [more]
A0A250XL51_9CHLO1.840e-1859.15PITH domain-containing protein n=1 Tax=Chlamydomon... [more]
A0A5N5MDD8_9ROSI1.890e-1852.86PITH domain-containing protein n=1 Tax=Salix brach... [more]
A0A7S4HIT9_9EUKA3.150e-1855.07Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
S8C4H6_9LAMI3.780e-1854.29PITH domain-containing protein (Fragment) n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22789contigH-paniculata_contig22789:2780..3856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue2.7e-28
Seed eggNOG ortholog2880.D8LJA7
Preferred namePITHD1
KEGG koko:K02906,ko:K15218
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0033554,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050896,GO:0051716
EggNOG free text desc.cellular response to DNA damage stimulus
EggNOG OGsKOG1730@1,KOG1730@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021
Exons2
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.2544212-CDS-H-paniculata_contig22789:2779..28511622929634.2544212-CDS-H-paniculata_contig22789:2779..2851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22789 2780..2851 -
1691480944.753957-CDS-H-paniculata_contig22789:2779..28511691480944.753957-CDS-H-paniculata_contig22789:2779..2851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22789 2780..2851 -
1622929634.2664561-CDS-H-paniculata_contig22789:3673..38561622929634.2664561-CDS-H-paniculata_contig22789:3673..3856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22789 3674..3856 -
1691480944.7670398-CDS-H-paniculata_contig22789:3673..38561691480944.7670398-CDS-H-paniculata_contig22789:3673..3856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22789 3674..3856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22789.6073.1prot_H-paniculata_contig22789.6073.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22789 2780..3856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22789.6073.1

>prot_H-paniculata_contig22789.6073.1 ID=prot_H-paniculata_contig22789.6073.1|Name=mRNA_H-paniculata_contig22789.6073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MIPPRAPFVPLTATRVRCLNESVPGGALNCLKPWDRRRDPEPRLESEEDD
PELIIFVPFTQAVKIKAISVIGGREGTAPSSMKV*
back to top

mRNA from alignment at H-paniculata_contig22789:2780..3856-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22789.6073.1 ID=mRNA_H-paniculata_contig22789.6073.1|Name=mRNA_H-paniculata_contig22789.6073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1077bp|location=Sequence derived from alignment at H-paniculata_contig22789:2780..3856- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCCCCCGCGCGCGCCGTTCGTCCCTCTGACCGCGACAAGGGTACG GTGCTTGAATGAGAGCGTGCCAGGCGGAGCTTTGAACTGTCTCAAGCCAT GGGACAGGAGACGAGATCCAGAGCCTAGACTGGAGAGCGAGGAAGATGAT CCCGAACTCATAATTTTCGTGCCCTTCACACAGGTTAATTACGCGATCAA GCAAGGGGGGACGGGGGATGTAGGCAGTAGCTCGGGGAGAATACCGGCAT AGCCTAGAGTGTGCGGTGTAAGCGATGCCGCCGTCCTAGCGTAATTGCCC TTGCACGCGAGTGTTAGGTTTGTCTCGTTGACGAATGGTGAATAAGGGAG AGAGGACTCAACGGACCAAGAGCCGCTCTCTCACATGAAGCAAGTCTACG GCTCAATACAAAAAAACTGTGGAAATGCATTTTCTTTCCACTGTAGACCC TCCCGGGCAGGCTTTTCCATTCTGTTTTTGTTTCTACCAATCTGGGGAAG AAAAAAAAGACATTGCAAATAGACCGAAAAAAGTCCAAACCCGCCGTTCG GGTTACCCGGCCCGATCATCTTTCTGGCATATCCCTCTTAGCATGAAATT GTCACATATGTACCATCTACGCTCGCGGGATCATATTTCTTCCCCGACGA AAATCGACGATCGATGATGGTGGACACACAACGAATTTGTTCCCAAGCTA GCGGGGCACGTCTAGGTGTAGGAGTACAACCGCACAGTGTGGTTGATTCA GCACAAAGGTGTTGCTAAAAAGTACAAGGAGAGGGATGCATGTTCGTTTG TGACCCCCTCCAATCGATGCACCCGTTTTAGTAAAAGTGTGGAATAACAA CCAGGTGCAGGGATTGTTGGGTCGGAGATATTTCCCTCTCTCAGGCGTAG CAAGCAGCCTTCCTTTTGCTTCCGCCTCGTACCGTTTTGCGTTTTCTTTC GTTTTCCATTTACTCACTCTGTCTCTTCGCGCGTGTGTGTGGCCATAAAA GTCAGGCGGTAAAAATCAAGGCGATCAGCGTAATCGGCGGAAGAGAGGGG ACTGCTCCATCTAGCATGAAAGTGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22789:2780..3856-

>mRNA_H-paniculata_contig22789.6073.1 ID=mRNA_H-paniculata_contig22789.6073.1|Name=mRNA_H-paniculata_contig22789.6073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig22789:2780..3856- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCCCCCGCGCGCGCCGTTCGTCCCTCTGACCGCGACAAGGGTACG
GTGCTTGAATGAGAGCGTGCCAGGCGGAGCTTTGAACTGTCTCAAGCCAT
GGGACAGGAGACGAGATCCAGAGCCTAGACTGGAGAGCGAGGAAGATGAT
CCCGAACTCATAATTTTCGTGCCCTTCACACAGATGATCCCCCCGCGCGC
GCCGTTCGTCCCTCTGACCGCGACAAGGGTACGGTGCTTGAATGAGAGCG
TGCCAGGCGGAGCTTTGAACTGTCTCAAGCCATGGGACAGGAGACGAGAT
CCAGAGCCTAGACTGGAGAGCGAGGAAGATGATCCCGAACTCATAATTTT
CGTGCCCTTCACACAGGCGGTAAAAATCAAGGCGATCAGCGTAATCGGCG
GAAGAGAGGGGACTGCTCCATCTAGCATGAAAGTGTGAGCGGTAAAAATC
AAGGCGATCAGCGTAATCGGCGGAAGAGAGGGGACTGCTCCATCTAGCAT
GAAAGTGTGA
back to top