mRNA_H-paniculata_contig2278.6067.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2278.6067.1
Unique NamemRNA_H-paniculata_contig2278.6067.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2278.6067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2278contigH-paniculata_contig2278:5714..7781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size229
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2278.6067.1prot_H-paniculata_contig2278.6067.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2278 5737..7781 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.8661845-UTR-H-paniculata_contig2278:5713..57361622929633.8661845-UTR-H-paniculata_contig2278:5713..5736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2278 5714..5736 +
1691480944.5172315-UTR-H-paniculata_contig2278:5713..57361691480944.5172315-UTR-H-paniculata_contig2278:5713..5736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2278 5714..5736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.8756948-CDS-H-paniculata_contig2278:5736..57451622929633.8756948-CDS-H-paniculata_contig2278:5736..5745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2278 5737..5745 +
1691480944.5356631-CDS-H-paniculata_contig2278:5736..57451691480944.5356631-CDS-H-paniculata_contig2278:5736..5745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2278 5737..5745 +
1622929633.8855126-CDS-H-paniculata_contig2278:7586..77811622929633.8855126-CDS-H-paniculata_contig2278:7586..7781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2278 7587..7781 +
1691480944.546208-CDS-H-paniculata_contig2278:7586..77811691480944.546208-CDS-H-paniculata_contig2278:7586..7781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2278 7587..7781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2278.6067.1

>prot_H-paniculata_contig2278.6067.1 ID=prot_H-paniculata_contig2278.6067.1|Name=mRNA_H-paniculata_contig2278.6067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MDEAINITIKLVPMPEGPTSEGARQFAIEVADCAGREVYSEKQFVVASHP
RLELDGGSYGAVFVLHPI
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mRNA from alignment at H-paniculata_contig2278:5714..7781+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2278.6067.1 ID=mRNA_H-paniculata_contig2278.6067.1|Name=mRNA_H-paniculata_contig2278.6067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2068bp|location=Sequence derived from alignment at H-paniculata_contig2278:5714..7781+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAGGTGTTCACCTACACCTCCATGGATGAGGTATGCGCGGCGGGGCGA
TCCGGTTTGCCTGCCATGGGTTTGGTCCACTGGGCATCCCGACTAATCAA
ACGTGCACACTGAGCCGATCTATGGACATTTGAGCTTCGCACTCATGTAT
AGGTAACACCGCGCCATCACAGCGAGCACTTGCTTCGTGTGTGATACAAA
AACTCGAATGAAAAATCTACTCATGTTCGACAGGTGGATCGATGTTGATG
TACAAGAAAGGTCAAACGGCATTTTTCACTCAAATTTCGAAAATTCACGG
GCACATATATTTTGTCTCAATCAACGTTTACCGAGTCAACACACGGGCGC
CCAAAACACGTTGTTCACTCTTCACAGGGACGAAAGTCGCAAGTTCCCTT
ACGGCTAGACTTGCGGCTATCACAGGAGCACTCTTACAATAATGATGTGC
CTCTAAATCGTTGTCTGCGTGATTTTCACACGTGTCTTGACTGAATTTTT
TTATCTCCAACCCCAAAATTCTGGTAGATGGAGCGATACGGGGCTGTCTT
CGTCGAAGATCGTGTTCGATAAGGCACAAGAATTTTTTGTGCGGTTGGAC
TAATCAAGTGCCGCCATCAGAAGATTTGAATTCAAATGGCGGCGTAATTG
TTTTTGGCGGTCCTCATGCATGGCAGTAATCATGCAATTGCCTGATTGTG
AAAAGTCAATGAAGATGGCCCTCTCTTCATATAACTGGTTGTAACAGTCA
GTCACTAGTATAAACACTACCCAGGGTTTATTAAATACGATTGTACTATT
CTGGAAATACCGAGTATAGCACAGACAATCAGCAATCTGACAGATTGTCA
AGTCAGAACACACGCAAGTTTACATTACGTACAGACAGCAGTACAGGTAG
CATGGTCTGTGGATATTGTAGACGATAAGACAGTCGGCGTAGTCCATTGG
AAGTCATGATGGCGCCGCTCACCACCGGCGTTTACTGCGTGAAGCAGACG
GGCACATTCCCGAGAAGCACAGAGTAAAACCACGAGGTAAAACAAGATAT
ACTTGGATTTTTGTAGGCACACAAACAACAAGGTAATACCGAGCAAAAAA
TTAGCGCTGGCACACTGGCCATCACACTCGAAACAAGTTAATAAAAACAG
GGCGAAAAAAATACGCCACAACACAGGACGCAGCATGATGATGGCGGCAG
AGCGTGTCGCAGTGGTGCCGCCAGATGTCCTATCATCTGGGCAGAGGGGA
TCGATCTGTACCTCACTCAACCGATACTGCACGGTTTTCAAAATAGCACG
CACCTCCGCCAGCTTTTTGAGACTCCGGAGGGACACGTGGGTAACATGTG
CATTCCCATTACCATAAAATTTACCTCCGAATAGTTATGTTGATGTGGCT
ACTTTTTTTTAATGTGCACATTCGAAAGGCTAGTGAAAGATAAGTTGCAT
ACACCCATAGTGGTAACCACCTCCGGCGGAATGCAAAACCGAAACGGACC
AAACACGAGATTAGAATCACAGCGGAACTCTTGATCGCAAATTAAACACT
AGGAATTCGCTCTTCAAAAACATAAACCCAAAAAACACAGCCCCGCACAC
CGGATGCACGCGTATACGCTGGTAGTGCCCGTAACTTGAGACGAGCTTGG
AGGTGTCATTTTCTATCAAGACACGAAGGAAGAAGGTGCGAATGTAATGT
GTTCGCATTCGATGAAGAGAGGGTGAGATCCCGGAGAAAGGCAGCAGCTA
CAACGTACCAGTAGGCACAGAACCGTAATGAAATGAATTGTCATCGAATG
TCAATACCTGATGATGACTTGTGCTGCCGTTCCATGTCCGATGGTAAACT
GTAAATGTTGAAATTTCTCGCAGGCCATCAACATCACAATCAAGCTGGTG
CCGATGCCCGAGGGGCCGACGTCTGAGGGTGCACGACAGTTTGCCATCGA
GGTGGCGGACTGCGCAGGGAGAGAAGTCTACTCCGAAAAGCAATTTGTGG
TGGCTTCACACCCAAGGCTAGAGCTGGACGGCGGATCCTACGGTGCTGTA
TTCGTTTTGCACCCGATC
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Coding sequence (CDS) from alignment at H-paniculata_contig2278:5714..7781+

>mRNA_H-paniculata_contig2278.6067.1 ID=mRNA_H-paniculata_contig2278.6067.1|Name=mRNA_H-paniculata_contig2278.6067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig2278:5714..7781+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAGATGGATGAGGCCATCAACATCACAATCAAGCTGGTGCCGAT
GCCCGAGGGGCCGACGTCTGAGGGTGCACGACAGTTTGCCATCGAGGTGG
CGGACTGCGCAGGGAGAGAAGTCTACTCCGAAAAGCAATTTGTGGTGGCT
TCACACCCAAGGCTAGAGCTGGACGGCGGATCCTACGGTGCTGTATTCGT
TTTGCACCCGATCGCCATCAACATCACAATCAAGCTGGTGCCGATGCCCG
AGGGGCCGACGTCTGAGGGTGCACGACAGTTTGCCATCGAGGTGGCGGAC
TGCGCAGGGAGAGAAGTCTACTCCGAAAAGCAATTTGTGGTGGCTTCACA
CCCAAGGCTAGAGCTGGACGGCGGATCCTACGGTGCTGTATTCGTTTTGC
ACCCGATC
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