mRNA_H-paniculata_contig22733.6058.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22733.6058.1
Unique NamemRNA_H-paniculata_contig22733.6058.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: D8LU34_ECTSI (U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU34_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-11
Identity = 30/42 (71.43%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAK 126
            R+TIVQHLLNDS DPFNR+ L+EDM++PQ ELR+RI++FLA+
Sbjct:  913 RSTIVQHLLNDSMDPFNRQPLTEDMVEPQTELRERIEEFLAR 954
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BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: A0A835Z369_9STRA (Ubiquitin elongating factor core-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z369_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.010e-11
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKG 129
            RATI+QHLLND  DPFNRK LS DMLQPQ EL+ RID +LAK 
Sbjct:  822 RATIMQHLLNDETDPFNRKPLSVDMLQPQVELKARIDAYLAKA 864
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BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: A0A1B6KM91_9HEMI (U-box domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6KM91_9HEMI)

HSP 1 Score: 57.8 bits (138), Expect = 1.770e-9
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS 147
            R TI++HLLN S DPF+R+ LSEDMLQP PEL++RI  +  +  +K SS
Sbjct:   63 RDTIIRHLLNSSTDPFSRQPLSEDMLQPAPELKERIQVWKREKLKKQSS 111
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BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: A0A7S0V9M9_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V9M9_9CRYP)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS 147
            R T+V+HLL+D  DPFNR+ L+ DML+PQ EL+QRI +F+AK K  +S+
Sbjct:  500 RTTVVRHLLSDETDPFNRQRLTIDMLEPQVELKQRIQEFVAKRKLDAST 548
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BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: A0A6U2CMW7_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2CMW7_HEMAN)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS 147
            R T+V+HLL+D  DPFNR+ L+ DML+PQ EL+QRI +F+AK K  +S+
Sbjct:  926 RTTVVRHLLSDETDPFNRQRLTIDMLEPQVELKQRIQEFVAKRKLDAST 974
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BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: A0A6F9DWR3_9ASCI (Ubiquitin conjugation factor E4 B n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DWR3_9ASCI)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-8
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS 147
            R  I++HLLN S DPFNR+ L EDMLQP PELRQ+I D++ + + K S+
Sbjct:  998 RNIIMRHLLNSSTDPFNRQELKEDMLQPVPELRQKITDWIEEKESKISN 1046
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BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: UPI0006B07812 (ubiquitin conjugation factor E4 A-like isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B07812)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSS 144
            R+TI +HLL+D +DPFNR  LS DM+ P PEL+Q+I ++L K +R SS
Sbjct: 1030 RSTIARHLLSDQSDPFNRSPLSMDMVIPDPELKQKIQEWLEKQRRVSS 1077
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BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: UPI0020076995 (ubiquitin elongating factor core-domain-containing protein n=1 Tax=Epithele typhae TaxID=378194 RepID=UPI0020076995)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS 147
            RATI  HLL+DS DPFNR  LS D ++P  EL+QRID FLA+ + K+++
Sbjct: 1037 RATIKSHLLSDSKDPFNRTPLSLDQVEPNVELKQRIDAFLAERRNKNTA 1085
[Close]
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: UPI00193DDA46 (ubiquitin conjugation factor E4 B isoform X1 n=2 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193DDA46)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS 147
            R+ IV+HLLN S DPF+R+ LSEDML+P PEL+QRI+ +  +  +KS S
Sbjct: 1104 RSVIVRHLLNSSTDPFSRQPLSEDMLKPAPELKQRIEAWKQEKCKKSDS 1152
[Close]
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Match: A0A0G4III8_PLABS (U-box domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4III8_PLABS)

HSP 1 Score: 57.4 bits (137), Expect = 2.670e-8
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSS 144
            R TI +HLLN+  DPFNR+ LS + L P PEL+QRIDD++ + KRK S
Sbjct:  864 RPTIERHLLNNPTDPFNRQPLSVEELIPNPELKQRIDDWMQERKRKPS 911
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22733.6058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU34_ECTSI1.070e-1171.43U-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z369_9STRA2.010e-1174.42Ubiquitin elongating factor core-domain-containing... [more]
A0A1B6KM91_9HEMI1.770e-957.14U-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S0V9M9_9CRYP2.180e-957.14Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A6U2CMW7_HEMAN2.180e-957.14Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A6F9DWR3_9ASCI1.040e-857.14Ubiquitin conjugation factor E4 B n=1 Tax=Phallusi... [more]
UPI0006B078121.950e-856.25ubiquitin conjugation factor E4 A-like isoform X1 ... [more]
UPI00200769951.950e-857.14ubiquitin elongating factor core-domain-containing... [more]
UPI00193DDA461.950e-857.14ubiquitin conjugation factor E4 B isoform X1 n=2 T... [more]
A0A0G4III8_PLABS2.670e-858.33U-box domain-containing protein n=1 Tax=Plasmodiop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22733contigH-paniculata_contig22733:3441..3590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue5.7e-10
Seed eggNOG ortholog2880.D8LU34
Preferred nameUBE4B
KEGG koko:K10596,ko:K10597
KEGG Pathwayko04120,ko04141,map04120,map04141
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000166,GO:0000209,GO:0003007,GO:0003205,GO:0003206,GO:0003208,GO:0003222,GO:0003229,GO:0003231,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0006915,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007507,GO:0007517,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008626,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0012501,GO:0014706,GO:0016043,GO:0016567,GO:0016740,GO:0017076,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030163,GO:0030182,GO:0030433,GO:0030554,GO:0031175,GO:0031323,GO:0031325,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031625,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034450,GO:0034976,GO:0035639,GO:0035690,GO:0036094,GO:0036211,GO:0036503,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045471,GO:0046677,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048644,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048738,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051087,GO:0051117,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051603,GO:0051716,GO:0051865,GO:0055008,GO:0055010,GO:0060255,GO:0060415,GO:0060537,GO:0061061,GO:0061383,GO:0061384,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0070887,GO:0071236,GO:0071310,GO:0071361,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0097159,GO:0097190,GO:0097237,GO:0097305,GO:0097306,GO:0097367,GO:0120036,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901701,GO:1902494,GO:1903320,GO:1903322,GO:1990234
EggNOG free text desc.peptidyl-tyrosine sulfation
EggNOG OGsCOG5113@1,KOG2042@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.5545616-CDS-H-paniculata_contig22733:3440..35901622929632.5545616-CDS-H-paniculata_contig22733:3440..3590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22733 3441..3590 -
1691480944.1487806-CDS-H-paniculata_contig22733:3440..35901691480944.1487806-CDS-H-paniculata_contig22733:3440..3590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22733 3441..3590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22733.6058.1prot_H-paniculata_contig22733.6058.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22733 3441..3590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22733.6058.1

>prot_H-paniculata_contig22733.6058.1 ID=prot_H-paniculata_contig22733.6058.1|Name=mRNA_H-paniculata_contig22733.6058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
RATIVQHLLNDSNDPFNRKALSEDMLQPQPELRQRIDDFLAKGKRKSSS*
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mRNA from alignment at H-paniculata_contig22733:3441..3590-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22733.6058.1 ID=mRNA_H-paniculata_contig22733.6058.1|Name=mRNA_H-paniculata_contig22733.6058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig22733:3441..3590- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCAACCATTGTGCAGCATCTATTGAACGACAGCAATGACCCGTTTAA
TAGGAAAGCTCTGTCAGAAGACATGCTCCAGCCACAACCCGAGTTGCGCC
AGCGAATCGACGACTTCCTGGCTAAGGGCAAGAGGAAAAGCAGCAGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22733:3441..3590-

>mRNA_H-paniculata_contig22733.6058.1 ID=mRNA_H-paniculata_contig22733.6058.1|Name=mRNA_H-paniculata_contig22733.6058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig22733:3441..3590- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCAACCATTGTGCAGCATCTATTGAACGACAGCAATGACCCGTTTAA
TAGGAAAGCTCTGTCAGAAGACATGCTCCAGCCACAACCCGAGTTGCGCC
AGCGAATCGACGACTTCCTGGCTAAGGGCAAGAGGAAAAGCAGCAGCTGA
AGGGCAACCATTGTGCAGCATCTATTGAACGACAGCAATGACCCGTTTAA
TAGGAAAGCTCTGTCAGAAGACATGCTCCAGCCACAACCCGAGTTGCGCC
AGCGAATCGACGACTTCCTGGCTAAGGGCAAGAGGAAAAGCAGCAGCTGA
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