prot_H-paniculata_contig2270.6044.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig2270.6044.1
Unique Name	prot_H-paniculata_contig2270.6044.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	245

Homology

[Close]

BLAST of mRNA_H-paniculata_contig2270.6044.1 vs. uniprot
Match: D8LCR7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR7_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 8.310e-115
Identity = 187/246 (76.02%), Postives = 199/246 (80.89%), Query Frame = 0

Query:    1 MKVLSTVSAMTACASCATAFVTPS-FSQNALRMQQQAVSQSRAATP-LRMAEGPPAEVAEEVAEDPEPTPVVPKVEMSASIPFLTRPKNLDGMVGDIGFDPLGLATIFPVKFMREAEIKHGRVAMLAVVGWLVSEVVHLPGPAYMSENPVDAMAAVGPSPMLQIFCFCGFLEWRFHKGKMTMDNMHEDGAEPGAFGFDPLKLDNKDAAVREKYQLQEIKNGRLAMSAIGGLIHQSLLLHGGVPFHA 244
            MKV+STV A  ACASCA+AFV PS FS+         +S S AA+  LRMAE   AE   E A +PEP P  P   MSASIPFL +PKNL+GMVGDIGFDP G ATIFPVKFMREAE+KHGRVAMLAVVGWLVSEVVH+PG AYMSENPVDAMAAVGP PMLQIF FCGFLEW+FH GKMTMDNMHEDG EPG FGFDP+ L  K A VREKYQLQEIKNGRLAMSAIGGLIHQSLLL GGVPFHA
Sbjct:    1 MKVISTVGAGLACASCASAFVAPSSFSR--------VISSSPAASKALRMAEEVAAEP--EAAVEPEPVPAGPA--MSASIPFLEQPKNLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGNEPGDFGFDPMMLAKKPADVREKYQLQEIKNGRLAMSAIGGLIHQSLLLGGGVPFHA 234

[Close]

BLAST of mRNA_H-paniculata_contig2270.6044.1 vs. uniprot
Match: A0A835Z4D2_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D2_9STRA)

HSP 1 Score: 223 bits (569), Expect = 6.130e-71
Identity = 107/169 (63.31%), Postives = 131/169 (77.51%), Query Frame = 0

Query:   75 MSASIPFLTRPKNLDGMVGDIGFDPLGLATIFPVKFMREAEIKHGRVAMLAVVGWLVSEVVHLPGPAYMSENPVDAMAAVGPSPMLQIFCFCGFLEWRFHKGKMTMDNMHEDGAEPGAFGFDPLKLDNKDAAVREKYQLQEIKNGRLAMSAIGGLIHQSLLLHGGVPFH 243
            MS S+PFL +PK LDG VG+  FDP  L+ + P+ F+RE+E+KHGR+AMLAVVG++VSE++H+PG AY + NPVDA+  VG  PMLQIF FCGFLE  FHKGKMTM +MH DG  PG FGFDPL + +KD A   +YQL EIKNGRLAM AI GLIHQS++   GVPF+
Sbjct:    1 MSKSLPFLVKPKQLDGWVGNAEFDPFSLSELLPMAFVRESELKHGRIAMLAVVGFVVSELIHIPGEAYQASNPVDAVNMVGAQPMLQIFAFCGFLESVFHKGKMTMMDMHADGQTPGDFGFDPLNV-SKDPAKLAQYQLSEIKNGRLAMMAISGLIHQSIITGHGVPFN 168

[Close]

BLAST of mRNA_H-paniculata_contig2270.6044.1 vs. uniprot
Match: A0A6V1U3D5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U3D5_HETAK)

HSP 1 Score: 201 bits (512), Expect = 2.370e-62
Identity = 99/162 (61.11%), Postives = 122/162 (75.31%), Query Frame = 0

Query:   75 MSASIPFLTRPKNLDGMVGDIGFDPLGLATIFPVKFMREAEIKHGRVAMLAVVGWLVSEVVHLPGPAYMSENPVDAMAAVGPSPMLQIFCFCGFLEWRFHKGKMTMDNMHEDGA-EPGAFGFDPLKLDNKDAAVREKYQLQEIKNGRLAMSAIGGLIHQSLL 235
            MS S+PFL  PKN  GM+GD GFDP G +  F +K+MREAE+KHGRV+MLAVVG+LVS+ VHLPGPAY S NP+DA++ VGP P+ QIF FCGFLE+  +KGKMTM +M ED   +PG  GFDP+ L        E+ QL+E++NGRLAM AIGGL+H  LL
Sbjct:    1 MSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIDALSMVGPQPLAQIFLFCGFLEFTMNKGKMTMLDMFEDKERKPGFLGFDPMNLGK--GGPSEEMQLKELENGRLAMCAIGGLVHHFLL 160

[Close]

BLAST of mRNA_H-paniculata_contig2270.6044.1 vs. uniprot
Match: W7TJ16_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ16_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.790e-58
Identity = 98/166 (59.04%), Postives = 121/166 (72.89%), Query Frame = 0

Query:   71 PKVEMSASIPFLTRPKNLDGMVGDIGFDPLGLATIFPVKFMREAEIKHGRVAMLAVVGWLVSEVVHLPGPAYMSENPVDAMAAVGPSPMLQIFCFCGFLEWRFHKGKMTMDNMHEDGA-EPGAFGFDPLKLDNKDAAVREKYQLQEIKNGRLAMSAIGGLIHQSLL 235
            P+   S S+PFL +PKNLDGMVGD+GFDPLGLA    ++++REAE+K+GRVAMLA +G++V E + LPG  Y   N V A   VGP P++QIF FCGFLE+  HKGKMT  +M  DG  EPG FGFDPL    KD + RE+  L E+KNGRLAM AIGGLIH +L+
Sbjct:  123 PQPVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGF-GKDPSKRERLALAELKNGRLAMIAIGGLIHHALV 287

[Close]

BLAST of mRNA_H-paniculata_contig2270.6044.1 vs. uniprot
Match: A0A7S0T6N2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6N2_9RHOD)

HSP 1 Score: 175 bits (444), Expect = 1.950e-51
Identity = 94/173 (54.34%), Postives = 116/173 (67.05%), Query Frame = 0

Query:   69 VVPKVEMSASIPFLTRPKNLD-GMVGDIGFDPLGLATIFPVKFMREAEIKHGRVAMLAVVGWLVSEVVHLPGPAYMSENPVDAMAAVGPSPMLQIFCFCGFLEWRFHKGKMTMDNMHEDGAEPGAFGFDPLKLDNKDAAVREKYQLQEIKNGRLAMSAIGGLIHQSLLLHGGV 240
            VV   E SAS+PFL++P N+D  MVG  GFDPLGL+T    +F++E+EIKHGR+ MLAVVG+LV EVVHLPG  + ++   +A + V    + QIF  CG  E+  HKGKMT  ++  D   PGA GFDPL L  KD    +K+QL EIKNGRLAM AIGG IHQ  L   GV
Sbjct:   27 VVMMAEKSASVPFLSKPANIDESMVGYTGFDPLGLSTYLSARFLQESEIKHGRICMLAVVGFLVQEVVHLPGEVFSAKLATEAFSKVPTGGLWQIFIACGVAEYIGHKGKMTYMDISADKGTPGAMGFDPLNL-GKDPEKFKKFQLNEIKNGRLAMIAIGGFIHQMWLTKQGV 198

[Close]

BLAST of mRNA_H-paniculata_contig2270.6044.1 vs. uniprot
Match: A0A7S4DC05_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC05_HETAK)

HSP 1 Score: 172 bits (436), Expect = 1.170e-50
Identity = 81/129 (62.79%), Postives = 101/129 (78.29%), Query Frame = 0

Query:   73 VEMSASIPFLTRPKNLDGMVGDIGFDPLGLATIFPVKFMREAEIKHGRVAMLAVVGWLVSEVVHLPGPAYMSENPVDAMAAVGPSPMLQIFCFCGFLEWRFHKGKMTMDNMHEDGA-EPGAFGFDPLKL 200
            +EMS S+PFL  PKN  GM+GD GFDP G +  F +K+MREAE+KHGRV+MLAVVG+LVS+ VHLPGPAY S NP++A++ VGP P+ QIF FCGFLE+  +KGKMTM +M ED   +PG  GFDP+ L
Sbjct:   43 MEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDTFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIEALSMVGPQPLAQIFLFCGFLEFTQNKGKMTMLDMFEDKERKPGFLGFDPMNL 171

[Close]

BLAST of mRNA_H-paniculata_contig2270.6044.1 vs. uniprot
Match: M2VTV2_GALSU (Light-harvesting complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTV2_GALSU)

HSP 1 Score: 173 bits (438), Expect = 2.610e-50
Identity = 87/167 (52.10%), Postives = 116/167 (69.46%), Query Frame = 0

Query:   76 SASIPFLTRPKNLDGMV-GDIGFDPLGLATIFPVKFMREAEIKHGRVAMLAVVGWLVSEVVHLPGPAYMSENPVDAMAAVGPSPMLQIFCFCGFLEWRFHKGKMT-MDNMHEDGAEPGAFGFDPLKLDNKDAAVREKYQLQEIKNGRLAMSAIGGLIHQSLLLHGGV 240
            S S+PFL RPKNLDG   GD+GFDPL ++ +  ++++RE+EIKHGR+ MLA VG++V E VHLPG  + ++  +DA+  V    + QIF F G LE+  +KGKMT +D   +   +PG FGFDPL L  KD   R++Y++ EIKNGRLAM A+GG IH  LL H GV
Sbjct:   49 SLSVPFLERPKNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRICMLAAVGFIVQEFVHLPGEVFSNKVAIDALFQVPSGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGL-GKDPQARKRYEVAEIKNGRLAMLAVGGFIHHMLLTHQGV 214

[Close]

BLAST of mRNA_H-paniculata_contig2270.6044.1 vs. uniprot
Match: Q9FDZ6_GALSU (Light-harvesting protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FDZ6_GALSU)

HSP 1 Score: 170 bits (431), Expect = 3.140e-49
Identity = 87/167 (52.10%), Postives = 114/167 (68.26%), Query Frame = 0

Query:   76 SASIPFLTRPKNLDGMV-GDIGFDPLGLATIFPVKFMREAEIKHGRVAMLAVVGWLVSEVVHLPGPAYMSENPVDAMAAVGPSPMLQIFCFCGFLEWRFHKGKMT-MDNMHEDGAEPGAFGFDPLKLDNKDAAVREKYQLQEIKNGRLAMSAIGGLIHQSLLLHGGV 240
            S S+PFL RP+NLDG   GD+GFDPL ++ +  ++++RE+EIKHGR+AMLA +G++V E VHLPG  + ++  VDA   V    + QIF F G LE+  +KGKMT +D   +   +PG FGFDPL L  KD   R +YQ+ EIKNGRLAM A+GG IH   L H GV
Sbjct:   48 SPSVPFLERPQNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRIAMLAALGFIVQEFVHLPGQVFSNKVAVDAFFQVPRGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGL-GKDPQTRRRYQVAEIKNGRLAMLAVGGFIHHMFLTHQGV 213

[Close]

BLAST of mRNA_H-paniculata_contig2270.6044.1 vs. uniprot
Match: B7FUM6_PHATC (Protein fucoxanthin chlorophyll a/c protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FUM6_PHATC)

HSP 1 Score: 163 bits (412), Expect = 9.570e-47
Identity = 87/162 (53.70%), Postives = 113/162 (69.75%), Query Frame = 0

Query:   74 EMSASIPFLTRPKNLDGMVGDIGFDPLGLATIFPVKFMREAEIKHGRVAMLAVVGWLVSEVVHLPGPAYMSENPVDAMAAVGPSPMLQIFCFCGFLEWRFHKGKMTMDNMHEDGA-EPGAFGFDPLKLD-NKDAAVREKYQLQEIKNGRLAMSAIGGLIHQS 233
            EMS S+PFLT PKN  G VGD+GFDPLG +  F +K++RE+EIKHGR AMLA VG+++ +   LPG  ++ ++ + A  A G SPMLQI    G LEW  +KGK+TM++M  D + EPG  GFDP+ +  NK     E  QL+EIKNGRLAM AIGG+IH +
Sbjct:   32 EMSKSMPFLTAPKNTGGYVGDVGFDPLGFSDNFDMKWLRESEIKHGRAAMLATVGFVMQQFWTLPGMVHVDDSNL-APGAAGISPMLQIVFGMGALEWWTNKGKVTMEDMFSDSSREPGNLGFDPMGMSKNKSKEEAEAMQLKEIKNGRLAMLAIGGMIHHN 192

[Close]

BLAST of mRNA_H-paniculata_contig2270.6044.1 vs. uniprot
Match: A0A1X6NTR2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTR2_PORUM)

HSP 1 Score: 163 bits (412), Expect = 1.500e-46
Identity = 81/163 (49.69%), Postives = 107/163 (65.64%), Query Frame = 0

Query:   76 SASIPFLTRPKNLDG-MVGDIGFDPLGLATIFPVKFMREAEIKHGRVAMLAVVGWLVSEVVHLPGPAYMSENPVDAMAAVGPSPMLQIFCFCGFLEWRFHKGKMTMDNMHEDGAEPGAFGFDPLKLDNKDAAVREKYQLQEIKNGRLAMSAIGGLIHQSLLLH 237
            SAS+PFL +P   DG M GD+GFDPL L+    +K++RE E+K+GRVAMLA +G LV E VHLP P + +    DA   V    + Q+F  CG  E+  H+GK++ D+M EDG  PG FGFDPL L     A ++K +L E+KNGRLAM  IGG+IH + + H
Sbjct:   35 SASVPFLPQPAACDGSMAGDVGFDPLNLSGFIDIKWLREGELKNGRVAMLAFLGVLVQEFVHLPSPLFANPVATDAFFQVPAGGLWQVFLACGLCEFVSHRGKLSYDDMFEDGRIPGNFGFDPLGLYKGTPAQKKKLELAEVKNGRLAMIGIGGVIHSNFIYH 197

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig2270.6044.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig2270.6044.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LCR7_ECTSI	8.310e-115	76.02	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A835Z4D2_9STRA	6.130e-71	63.31	Chlorophyll a/b-binding protein domain-containing ...	[more]
A0A6V1U3D5_HETAK	2.370e-62	61.11	Hypothetical protein n=3 Tax=Heterosigma akashiwo ...	[more]
W7TJ16_9STRA	1.790e-58	59.04	Light-harvesting protein n=1 Tax=Nannochloropsis g...	[more]
A0A7S0T6N2_9RHOD	1.950e-51	54.34	Hypothetical protein n=1 Tax=Erythrolobus madagasc...	[more]
A0A7S4DC05_HETAK	1.170e-50	62.79	Hypothetical protein (Fragment) n=3 Tax=Heterosigm...	[more]
M2VTV2_GALSU	2.610e-50	52.10	Light-harvesting complex protein n=1 Tax=Galdieria...	[more]
Q9FDZ6_GALSU	3.140e-49	52.10	Light-harvesting protein n=1 Tax=Galdieria sulphur...	[more]
B7FUM6_PHATC	9.570e-47	53.70	Protein fucoxanthin chlorophyll a/c protein n=3 Ta...	[more]
A0A1X6NTR2_PORUM	1.500e-46	49.69	Uncharacterized protein n=1 Tax=Porphyra umbilical...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 79..244 e-value: 6.6E-39 score: 135.6
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 85..233 e-value: 1.2E-41 score: 143.0
None	No IPR available	PANTHER	PTHR21649:SF7	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 10..242
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..244
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.451
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 70..238
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 10..242

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig2270	contig	H-paniculata_contig2270:6101..9277 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig2270.6044.1	mRNA_H-paniculata_contig2270.6044.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig2270 5987..10363 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig2270.6044.1 ID=prot_H-paniculata_contig2270.6044.1|Name=mRNA_H-paniculata_contig2270.6044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=245bp
MKVLSTVSAMTACASCATAFVTPSFSQNALRMQQQAVSQSRAATPLRMAE
GPPAEVAEEVAEDPEPTPVVPKVEMSASIPFLTRPKNLDGMVGDIGFDPL
GLATIFPVKFMREAEIKHGRVAMLAVVGWLVSEVVHLPGPAYMSENPVDA
MAAVGPSPMLQIFCFCGFLEWRFHKGKMTMDNMHEDGAEPGAFGFDPLKL
DNKDAAVREKYQLQEIKNGRLAMSAIGGLIHQSLLLHGGVPFHA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln