mRNA_H-paniculata_contig22631.6025.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22631.6025.1
Unique NamemRNA_H-paniculata_contig22631.6025.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig22631.6025.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.410e-16
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:   21 YTGCAFKRDRAKGTLKMSQMAFADSEMERFEVTTMSELPLTPLVDLDPRHDDEDRGDWPFRAAMGCLL 224
            + GCA +RD   GTL++SQ A+ DS +ERF+V + S +P TP  DL P+ +DE+ G+WP R A+G ++
Sbjct:   48 FDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMM 115
[Close]
BLAST of mRNA_H-paniculata_contig22631.6025.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.260e-16
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:   21 YTGCAFKRDRAKGTLKMSQMAFADSEMERFEVTTMSELPLTPLVDLDPRHDDEDRGDWPFRAAMGCLL 224
            + GCA +RD   GTL++SQ A+ DS +ERF+V + S +P TP  DL P+ +DE+ G+WP R A+G ++
Sbjct:  112 FDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMM 179
[Close]
BLAST of mRNA_H-paniculata_contig22631.6025.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.660e-16
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:   21 YTGCAFKRDRAKGTLKMSQMAFADSEMERFEVTTMSELPLTPLVDLDPRHDDEDRGDWPFRAAMGCLL 224
            + GCA +RD   GTL++SQ A+ DS +ERF+V + S +P TP  DL P+ +DE+ G+WP R A+G ++
Sbjct:   48 FDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMM 115
[Close]
BLAST of mRNA_H-paniculata_contig22631.6025.1 vs. uniprot
Match: A0A6H5JQU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU4_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.410e-16
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:   21 YTGCAFKRDRAKGTLKMSQMAFADSEMERFEVTTMSELPLTPLVDLDPRHDDEDRGDWPFRAAMGCLL 224
            + GCA +RD   GTL++SQ A+ DS ++RF+V + S +P +P VDL P+ DDE RG+WP R A+G ++
Sbjct:  642 FDGCAIERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKRGEWPVREAIGSMM 709
[Close]
BLAST of mRNA_H-paniculata_contig22631.6025.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.390e-15
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:   21 YTGCAFKRDRAKGTLKMSQMAFADSEMERFEVTTMSELPLTPLVDLDPRHDDEDRGDWPFRAAMGCLL 224
            + GCA +RD   GTLK+SQ A+ DS +ERF+V +   +P +P VDL PR DDE  G+WP R A+G ++
Sbjct: 1444 FDGCAIERDIEAGTLKISQTAYIDSMVERFDVKSTLRIPASPGVDLGPRRDDEKGGEWPVREAIGSMM 1511
[Close]
BLAST of mRNA_H-paniculata_contig22631.6025.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.800e-15
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:   21 YTGCAFKRDRAKGTLKMSQMAFADSEMERFEVTTMSELPLTPLVDLDPRHDDEDRGDWPFRAAMGCLL 224
            + GCA +RD   GTL++SQ A+ DS +ERF+V + S +P TP  DL P+ +DE+ G+WP R A+G ++
Sbjct:  255 FDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMM 322
[Close]
BLAST of mRNA_H-paniculata_contig22631.6025.1 vs. uniprot
Match: A0A6H5K1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.870e-15
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:   21 YTGCAFKRDRAKGTLKMSQMAFADSEMERFEVTTMSELPLTPLVDLDPRHDDEDRGDWPFRAAMGCLL 224
            + GCA +RD   GTL++SQ A+ DS +ERF+V + S +P TP  DL P+ +DE+ G+WP R A+G ++
Sbjct:  508 FDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMM 575
[Close]
BLAST of mRNA_H-paniculata_contig22631.6025.1 vs. uniprot
Match: A0A6H5KYH9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.890e-15
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:   21 YTGCAFKRDRAKGTLKMSQMAFADSEMERFEVTTMSELPLTPLVDLDPRHDDEDRGDWPFRAAMGCLL 224
            + GCA +RD A GTL +SQ A+ DS ++RF+V + S +P +P VDL P+ DDE  G+WP R A+G ++
Sbjct:  681 FDGCAIERDVAAGTLTISQTAYVDSMVKRFDVQSASRIPASPGVDLGPKRDDEKGGEWPVREAIGSMM 748
[Close]
BLAST of mRNA_H-paniculata_contig22631.6025.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.900e-15
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:   21 YTGCAFKRDRAKGTLKMSQMAFADSEMERFEVTTMSELPLTPLVDLDPRHDDEDRGDWPFRAAMGCLL 224
            + GCA +RD   GTL++SQ A+ DS +ERF+V + S +P TP  DL P+ +DE+ G+WP R A+G ++
Sbjct:  968 FDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMM 1035
[Close]
BLAST of mRNA_H-paniculata_contig22631.6025.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.900e-15
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:   21 YTGCAFKRDRAKGTLKMSQMAFADSEMERFEVTTMSELPLTPLVDLDPRHDDEDRGDWPFRAAMGCLL 224
            + GCA +RD   GTL++SQ A+ DS +ERF+V + S +P TP  DL P+ +DE+ G+WP R A+G ++
Sbjct: 1077 FDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVRKAIGSMM 1144
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22631.6025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBH1_9PHAE1.410e-1647.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRS6_9PHAE2.260e-1647.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPT0_9PHAE4.660e-1647.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQU4_9PHAE5.410e-1648.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTI6_9PHAE1.390e-1550.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KTL3_9PHAE1.800e-1547.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1T2_9PHAE1.870e-1547.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYH9_9PHAE1.890e-1548.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.900e-1547.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE1.900e-1547.06Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22631contigH-paniculata_contig22631:3824..4047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size225
Cds size156
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.9324672-UTR-H-paniculata_contig22631:3823..38911622929628.9324672-UTR-H-paniculata_contig22631:3823..3891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22631 3824..3891 +
1691480942.434832-UTR-H-paniculata_contig22631:3823..38911691480942.434832-UTR-H-paniculata_contig22631:3823..3891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22631 3824..3891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.947964-CDS-H-paniculata_contig22631:3891..40471622929628.947964-CDS-H-paniculata_contig22631:3891..4047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22631 3892..4047 +
1691480942.4492826-CDS-H-paniculata_contig22631:3891..40471691480942.4492826-CDS-H-paniculata_contig22631:3891..4047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22631 3892..4047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22631.6025.1prot_H-paniculata_contig22631.6025.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22631 3892..4047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22631.6025.1

>prot_H-paniculata_contig22631.6025.1 ID=prot_H-paniculata_contig22631.6025.1|Name=mRNA_H-paniculata_contig22631.6025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MSQMAFADSEMERFEVTTMSELPLTPLVDLDPRHDDEDRGDWPFRAAMGC
LL
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mRNA from alignment at H-paniculata_contig22631:3824..4047+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22631.6025.1 ID=mRNA_H-paniculata_contig22631.6025.1|Name=mRNA_H-paniculata_contig22631.6025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=224bp|location=Sequence derived from alignment at H-paniculata_contig22631:3824..4047+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAGAGGTATTGACCTGATATACTGGATGTGCTTTTAAGCGAGATCGG
GCCAAGGGTACTTTAAAGATGAGCCAAATGGCTTTTGCTGACAGCGAGAT
GGAGCGGTTTGAAGTGACAACGATGTCTGAGCTCCCGCTCACCCCCCTTG
TTGACTTGGACCCAAGGCATGATGACGAAGACAGGGGAGACTGGCCTTTC
AGAGCCGCGATGGGGTGTCTCCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig22631:3824..4047+

>mRNA_H-paniculata_contig22631.6025.1 ID=mRNA_H-paniculata_contig22631.6025.1|Name=mRNA_H-paniculata_contig22631.6025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig22631:3824..4047+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCCAAATGGCTTTTGCTGACAGCGAGATGGAGCGGTTTGAAGTGAC
AACGATGTCTGAGCTCCCGCTCACCCCCCTTGTTGACTTGGACCCAAGGC
ATGATGACGAAGACAGGGGAGACTGGCCTTTCAGAGCCGCGATGGGGTGT
CTCCTGATGAGCCAAATGGCTTTTGCTGACAGCGAGATGGAGCGGTTTGA
AGTGACAACGATGTCTGAGCTCCCGCTCACCCCCCTTGTTGACTTGGACC
CAAGGCATGATGACGAAGACAGGGGAGACTGGCCTTTCAGAGCCGCGATG
GGGTGTCTCCTG
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