mRNA_H-paniculata_contig2258.6012.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: D7FLZ6_ECTSI (Eukaryotic translation initiation factor 4C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ6_ECTSI) HSP 1 Score: 261 bits (668), Expect = 3.050e-88 Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = 1
Query: 1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 405
GKGGKNRRRGKNENEETKRELEFKEAGQEYAQV+RMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDK +IIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFD+I
Sbjct: 6 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVVRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDEI 140
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: A0A7S2UW94_9STRA (Eukaryotic translation initiation factor 4C n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2UW94_9STRA) HSP 1 Score: 253 bits (646), Expect = 6.900e-85 Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 1
Query: 1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 405
GKGGKNRRRGKNENEETKRELEFKE GQEYAQVIRMLGNGR EC+CYDG+TRLGHIRGKMRKKVWVSAGDIVLVG RDYQDDK +IIHRYNADEARNLKQYGELPEHARINETAVD+AMEGDGA+DDIGIDFDDI
Sbjct: 6 GKGGKNRRRGKNENEETKRELEFKEDGQEYAQVIRMLGNGRCECFCYDGITRLGHIRGKMRKKVWVSAGDIVLVGLRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDIAMEGDGADDDIGIDFDDI 140
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: A0A7S2WRV7_9STRA (Eukaryotic translation initiation factor 4C n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2WRV7_9STRA) HSP 1 Score: 226 bits (576), Expect = 3.250e-74 Identity = 113/135 (83.70%), Postives = 124/135 (91.85%), Query Frame = 1
Query: 1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 405
GKGGKNRRRGKN+NEE+KR+LEFKE GQEY+QV+RMLGNGR ECYC+DG TRLGHIRGKMRKKVWVSAGDIVLVG R++QDDK +IIH+YNADEARNLK YGELPE ARINETAVDLAMEG DDIGIDFD+I
Sbjct: 6 GKGGKNRRRGKNDNEESKRQLEFKEPGQEYSQVVRMLGNGRCECYCFDGQTRLGHIRGKMRKKVWVSAGDIVLVGLREFQDDKVDIIHKYNADEARNLKTYGELPETARINETAVDLAMEGGDEVDDIGIDFDEI 140
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: B7FP79_PHATC (Eukaryotic translation initiation factor 4C (Fragment) n=6 Tax=Bacillariophycidae TaxID=33850 RepID=B7FP79_PHATC) HSP 1 Score: 224 bits (570), Expect = 2.260e-73 Identity = 109/135 (80.74%), Postives = 125/135 (92.59%), Query Frame = 1
Query: 1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 405
GKGGKNRRRGK + EE+KRELEFKE GQEYAQV++MLGNGR EC+C+DGVTRLGHIRGKMRKKVW++AGDIVLV KRD+QD+K +I+H+Y+ADEARNLKQYGELPE ARINETAVD+AM GD +DDIGIDFDDI
Sbjct: 1 GKGGKNRRRGKGDGEESKRELEFKEDGQEYAQVVKMLGNGRCECFCFDGVTRLGHIRGKMRKKVWITAGDIVLVAKRDFQDEKVDIVHKYSADEARNLKQYGELPETARINETAVDMAMAGDENDDDIGIDFDDI 135
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: A0A7S2A929_TRICV (Eukaryotic translation initiation factor 4C n=10 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S2A929_TRICV) HSP 1 Score: 224 bits (571), Expect = 3.770e-73 Identity = 111/135 (82.22%), Postives = 123/135 (91.11%), Query Frame = 1
Query: 1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 405
GKGGKNRRRGK + EE KRELEFKE GQEYAQV++MLGNGR EC+C+DGVTRLGHIRGKMRKKVWV+AGDIVLVGKRD+QD+K +I+H+Y ADEARNLKQYGELPE ARINETAVDLAM + EDDIGIDFDDI
Sbjct: 27 GKGGKNRRRGKGDGEEAKRELEFKEEGQEYAQVVKMLGNGRCECFCFDGVTRLGHIRGKMRKKVWVTAGDIVLVGKRDFQDEKVDILHKYTADEARNLKQYGELPETARINETAVDLAMTTEDGEDDIGIDFDDI 161
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: B5YN42_THAPS (Eukaryotic translation initiation factor 4C n=2 Tax=Thalassiosira TaxID=35127 RepID=B5YN42_THAPS) HSP 1 Score: 218 bits (555), Expect = 5.150e-71 Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 1
Query: 1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 405
G+GGKNRR EE+KRELEFKE GQEYAQV+RMLGNGR EC+CYDGVTRLGHIRGKMRKKVW++AGDIVLVGKRD+QD+K +I+H+Y+ADEARNLKQYGELPE ARINETAVD AM G+G +DDIGIDFDDI
Sbjct: 6 GQGGKNRRXXXXXXEESKRELEFKEEGQEYAQVVRMLGNGRCECFCYDGVTRLGHIRGKMRKKVWITAGDIVLVGKRDFQDEKVDILHKYSADEARNLKQYGELPETARINETAVDQAMAGEGDDDDIGIDFDDI 140
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: K3WDU9_GLOUD (Eukaryotic translation initiation factor 4C n=28 Tax=Oomycota TaxID=4762 RepID=K3WDU9_GLOUD) HSP 1 Score: 215 bits (547), Expect = 7.990e-70 Identity = 108/135 (80.00%), Postives = 121/135 (89.63%), Query Frame = 1
Query: 1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 405
GKGGKNRRRGKN+NEE KRELEFKE GQEYAQV+RMLGNGR E YC+DGVTRLGHIRGKMRKKVWV AGDI+LV R+YQD K +IIH+YNADEAR+LK YGELP++ARINET VD+AMEGD +DDIG +FDDI
Sbjct: 6 GKGGKNRRRGKNDNEENKRELEFKEDGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETTVDMAMEGD--DDDIGFEFDDI 138
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: W7TWV5_9STRA (Eukaryotic translation initiation factor 4C n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWV5_9STRA) HSP 1 Score: 209 bits (531), Expect = 2.420e-67 Identity = 105/136 (77.21%), Postives = 120/136 (88.24%), Query Frame = 1
Query: 1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDG-AEDDIGIDFDDI 405
GKGGKNRRRGKNENEETKR+L FKE GQEY QVI+MLGNGR E YC+DG RL HIRGKMRKKVWVSAGDIVL+G RDYQ+DK +IIH+YNADEARNLK +GELPE A+INETA+DL +EG +ED+IG+DFD+I
Sbjct: 6 GKGGKNRRRGKNENEETKRDLLFKEEGQEYGQVIKMLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: W4GJ99_9STRA (Eukaryotic translation initiation factor 4C n=8 Tax=Saprolegniaceae TaxID=4764 RepID=W4GJ99_9STRA) HSP 1 Score: 202 bits (514), Expect = 9.410e-65 Identity = 104/135 (77.04%), Postives = 116/135 (85.93%), Query Frame = 1
Query: 1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDDI 405
GKGGKNRRRGK + EE KRELEFKE GQEYAQV+RMLGNGR E YCYDGVTRLGHIRGKMRKKVWV GDIVLV R+YQD K +IIH+YNADEAR+LK YGELP++ARINET+VD M+G G +DD G +FDDI
Sbjct: 9 GKGGKNRRRGKGDVEENKRELEFKEDGQEYAQVLRMLGNGRLEAYCYDGVTRLGHIRGKMRKKVWVGVGDIVLVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETSVD--MDGAGDDDDCGFEFDDI 141
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Match: A0A0P1AHC5_PLAHL (Eukaryotic translation initiation factor 4C n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AHC5_PLAHL) HSP 1 Score: 204 bits (519), Expect = 1.290e-63 Identity = 99/122 (81.15%), Postives = 112/122 (91.80%), Query Frame = 1
Query: 1 GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKANIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGD 366
GKGGKNRRRGKN+NEE KR+LEFKE GQEYAQV+RMLGNGR E YC+DGVTRLGHIRGKMRKKVWV AGDI+LV R+YQD K ++IH+YNADEAR+LK YGELP++ARINETAVD+AMEGD
Sbjct: 6 GKGGKNRRRGKNDNEENKRDLEFKEDGQEYAQVVRMLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDVIHKYNADEARSLKAYGELPDNARINETAVDMAMEGD 127 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2258.6012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2258.6012.1 >prot_H-paniculata_contig2258.6012.1 ID=prot_H-paniculata_contig2258.6012.1|Name=mRNA_H-paniculata_contig2258.6012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp GKGGKNRRRGKNENEETKRELEFKEAGQEYAQVIRMLGNGRAECYCYDGVback to top mRNA from alignment at H-paniculata_contig2258:9405..10865- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2258.6012.1 ID=mRNA_H-paniculata_contig2258.6012.1|Name=mRNA_H-paniculata_contig2258.6012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1461bp|location=Sequence derived from alignment at H-paniculata_contig2258:9405..10865- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2258:9405..10865- >mRNA_H-paniculata_contig2258.6012.1 ID=mRNA_H-paniculata_contig2258.6012.1|Name=mRNA_H-paniculata_contig2258.6012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig2258:9405..10865- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |