mRNA_H-paniculata_contig2257.6010.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2257.6010.1
Unique NamemRNA_H-paniculata_contig2257.6010.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: D8LB47_ECTSI (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB47_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.200e-60
Identity = 121/214 (56.54%), Postives = 154/214 (71.96%), Query Frame = 1 
Query:   28 HPSSGLPQGTTLLVTPTREEAIAWSELLGASSCGLSVLSYIMPLRERRRLTARQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRS-CRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHGVWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLRVPAEIALVEAAGCLFYSNRPSHVAP 666
            H  +GLP G TL++ PT+E A  WS+ L + S GLSVL+Y+MPLRERRRL+A+QVA+FDVVVTTYD+LKAKEVPR VE  A    SPRS     + +WR+R     GQ +T   +A++K  + VSLLHGVWW RVVADGA+IL   RSARA AA  L+G ARWC+VD E++  +E++S+RM  L  FLRVPA + LVE A  L + +RP H+AP
Sbjct: 1158 HTGTGLPCGPTLILAPTKEAAWRWSDRLESGSGGLSVLNYVMPLRERRRLSAKQVAAFDVVVTTYDVLKAKEVPRGVE--AKEATSPRSWALPGSTQWRTRNAKEGGQKRT---SASSKTDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALALMGTARWCLVDCESMSIVEDASERMRCLAAFLRVPAAVPLVEVAESLLFRSRPRHIAP 1366
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BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: A0A6H5KIY1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY1_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 7.370e-58
Identity = 123/228 (53.95%), Postives = 154/228 (67.54%), Query Frame = 1 
Query:   28 HPSSGLPQGTTLLVTPTREEAIAWSELLGASSCGLSVLSYIMPLRERRRLTARQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRS-CRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHGVWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRM--W------------SLVRFLRVPAEIALVEAAGCLFYSNRPSHVAP 666
            H  +GLP G+TL++ PT+E A  WS+ L + S GLSVLSY+MPLRERRRL+A+QVA+FDVVVTTYD+LKAKEVPR VE  A    SPRS     + +WR+R     GQ ++   A+ T   + VSLLHGVWW RVVADGA+IL   RSARA AA  L G ARWC+VD E++  +E++SDRM  W             L  FLRVPA + LV+ A  LF+ +RP H+AP
Sbjct: 1156 HNGTGLPCGSTLILAPTKEAAWRWSDRLESGSGGLSVLSYVMPLRERRRLSAKQVAAFDVVVTTYDVLKAKEVPRGVE--AKEATSPRSWALPGSTQWRTRNGKEAGQKRSSSSASMT--DHMVSLLHGVWWDRVVADGAQILATQRSARAVAALTLAGTARWCLVDCESMSIVEDASDRMRAWIGREKEDNFLEECLAAFLRVPAAVPLVDVAESLFFRSRPRHIAP 1379
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BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: A0A2N9I951_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I951_FAGSY)

HSP 1 Score: 64.7 bits (156), Expect = 2.170e-7
Identity = 54/184 (29.35%), Postives = 86/184 (46.74%), Query Frame = 1 
Query:   40 GLPQGTTLLVTPTREEAIAWSELLGASSCGLSVLSYIMPLRERRRLTARQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHGVWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLR 591
            G P   TL+V PT      W+E L +     + LS ++     R   A ++AS+DVV+TTY I+  +   + +  E    K        + + R    + +  +K +K      + +A   L  V W RVV D A+ + N R+  A A  GL  + RWC+    +   I+N+ D ++S  RFLR
Sbjct:  835 GRPSAGTLIVCPT-SVLRQWAEELNSKVTSKAKLSVLVYHGSNRTKDAYELASYDVVLTTYSIVSMEVPKQSLGDEDDEEKGKPEDDTFSSKKRKYPNSEKKCSKNKKGLDCALLESAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCL----SGTPIQNAIDDLYSYFRFLR 1013
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BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: A0A1R1YAY0_9FUNG (DNA repair protein RAD5 n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAY0_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 1.150e-6
Identity = 59/213 (27.70%), Postives = 98/213 (46.01%), Query Frame = 1 
Query:   40 GLPQGTTLLVTPTREEAIAWSELLGASSCGLSVLSYIMPLRERRRLTARQVASFDVVVTTYDIL---KAKEVPRVVEPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHGVWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLRV-PAEI--ALVEAAGCLFYSNRPSHV 660
            G+    TL+V P       W + + A +   S+ +YI    +R R +A+ ++SFDVV+TTY+I+    AKEV ++   + TS   P                                   VS L  ++W RVV D A I+ + ++ ++ A+  L  R+RWC+        I+N  D ++SLV+FL   P ++    V+  G  F+SN   ++
Sbjct:  719 GVIYAGTLIVCPL-STVYNWEDQIKAHTARGSLSTYIYHGSDRTR-SAKFLSSFDVVITTYNIIFNEYAKEVRQLKPQDDTSFSIPDR-------------------------------PYVSPLQHLFWDRVVLDEAHIIKDRKTWQSRASCSLTARSRWCLTGTP----IQNRIDDLYSLVKFLHFSPLDLWYTWVKYIGAPFHSNLSENI 894
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BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: A0A1R1XY58_9FUNG (DNA repair protein RAD5 n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XY58_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 1.160e-6
Identity = 59/213 (27.70%), Postives = 98/213 (46.01%), Query Frame = 1 
Query:   40 GLPQGTTLLVTPTREEAIAWSELLGASSCGLSVLSYIMPLRERRRLTARQVASFDVVVTTYDIL---KAKEVPRVVEPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHGVWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLRV-PAEI--ALVEAAGCLFYSNRPSHV 660
            G+    TL+V P       W + + A +   S+ +YI    +R R +A+ ++SFDVV+TTY+I+    AKEV ++   + TS   P                                   VS L  ++W RVV D A I+ + ++ ++ A+  L  R+RWC+        I+N  D ++SLV+FL   P ++    V+  G  F+SN   ++
Sbjct:  754 GVIYAGTLIVCPL-STVYNWEDQIKAHTARGSLSTYIYHGSDRTR-SAKFLSSFDVVITTYNIIFNEYAKEVRQLKPQDDTSFSIPDR-------------------------------PYVSPLQHLFWDRVVLDEAHIIKDRKTWQSRASCSLTARSRWCLTGTP----IQNRIDDLFSLVKFLHFSPLDLWYTWVKYVGAPFHSNLSENI 929
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BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: A0A1D6PUW7_MAIZE (Putative SNF2-domain/RING finger domain/helicase domain protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6PUW7_MAIZE)

HSP 1 Score: 59.3 bits (142), Expect = 9.080e-6
Identity = 62/189 (32.80%), Postives = 87/189 (46.03%), Query Frame = 1 
Query:   46 PQGTTLLVTPTREEAIAWSELLG---ASSCGLSVLSYIMPLRERRRLTARQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHG----VWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLR 591
            P   TL+V P       WS  L    + S  LSVL Y    R +     R++A +DVVVTTY I+ A EVP+ +  +    K+             R  +   Q K +K+    K SN   L  G    V W RVV D A+ + N R+  A A  GL  + RWC+    +   I+N+ D ++S  RFL+
Sbjct:  160 PAAGTLVVCPA-SVLKQWSNELTDKVSESAKLSVLVYHGGARTK---DPRELAKYDVVVTTYTIV-ANEVPKQMADDDADQKNSEE----PSASNKRKPSANMQNKAKKKKKKLKDSN-FDLDSGPIARVRWFRVVLDEAQTIKNFRTVVARACCGLRAKRRWCL----SGTPIQNAIDDLFSYFRFLK 334
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BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: K7TWQ7_MAIZE (Putative SNF2-domain/RING finger domain/helicase domain protein n=3 Tax=Zea mays TaxID=4577 RepID=K7TWQ7_MAIZE)

HSP 1 Score: 59.3 bits (142), Expect = 9.170e-6
Identity = 62/189 (32.80%), Postives = 87/189 (46.03%), Query Frame = 1 
Query:   46 PQGTTLLVTPTREEAIAWSELLG---ASSCGLSVLSYIMPLRERRRLTARQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHG----VWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLR 591
            P   TL+V P       WS  L    + S  LSVL Y    R +     R++A +DVVVTTY I+ A EVP+ +  +    K+             R  +   Q K +K+    K SN   L  G    V W RVV D A+ + N R+  A A  GL  + RWC+    +   I+N+ D ++S  RFL+
Sbjct:  428 PAAGTLVVCPA-SVLKQWSNELTDKVSESAKLSVLVYHGGARTK---DPRELAKYDVVVTTYTIV-ANEVPKQMADDDADQKNSEE----PSASNKRKPSANMQNKAKKKKKKLKDSN-FDLDSGPIARVRWFRVVLDEAQTIKNFRTVVARACCGLRAKRRWCL----SGTPIQNAIDDLFSYFRFLK 602
[Close]
BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: K7UB18_MAIZE (Putative SNF2-domain/RING finger domain/helicase domain protein n=11 Tax=Zea mays TaxID=4577 RepID=K7UB18_MAIZE)

HSP 1 Score: 59.3 bits (142), Expect = 9.990e-6
Identity = 62/189 (32.80%), Postives = 87/189 (46.03%), Query Frame = 1 
Query:   46 PQGTTLLVTPTREEAIAWSELLG---ASSCGLSVLSYIMPLRERRRLTARQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHG----VWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLR 591
            P   TL+V P       WS  L    + S  LSVL Y    R +     R++A +DVVVTTY I+ A EVP+ +  +    K+             R  +   Q K +K+    K SN   L  G    V W RVV D A+ + N R+  A A  GL  + RWC+    +   I+N+ D ++S  RFL+
Sbjct:  428 PAAGTLVVCPA-SVLKQWSNELTDKVSESAKLSVLVYHGGARTK---DPRELAKYDVVVTTYTIV-ANEVPKQMADDDADQKNSEE----PSASNKRKPSANMQNKAKKKKKKLKDSN-FDLDSGPIARVRWFRVVLDEAQTIKNFRTVVARACCGLRAKRRWCL----SGTPIQNAIDDLFSYFRFLK 602
[Close]
BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: A0A6A3BWL5_HIBSY (Glucose-induced degradation protein 8-like protein isoform X1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BWL5_HIBSY)

HSP 1 Score: 58.5 bits (140), Expect = 1.560e-5
Identity = 63/215 (29.30%), Postives = 98/215 (45.58%), Query Frame = 1 
Query:    1 VLFRAGFPYHPSSGLPQGTTLLVTPTREEAIAWSELLG---ASSCGLSVLSYIMPLRERRRLTARQVASFDVVVTTYDILKAKEVPRVV--------------EPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSL-LHGVWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLR 591
            V     FP   + G P   TL+V PT      W+E L    +S   LSVL Y    R +      ++A++DVV+TTY I+ + EVP+                +  ++S+  P S +R          +V  +    K+     + ++VS  L  V W R+V D A+ + N R+  A A  GL  + RWC+    +   I+N+ D ++S  RFLR
Sbjct:   70 VEMETSFPSGQAKGRPAAGTLIVCPT-SVLRQWAEELHNKVSSKANLSVLVYHGSNRTKDPF---ELATYDVVLTTYSIV-SMEVPKQPPVHGEDDEKGKWESDHASSSMDCPPSRKRKCPS------SVNKKGVKHKKGVDELLLDSVSRPLAKVGWFRIVLDEAQSIKNHRTQVARACWGLRAKRRWCL----SGTPIQNAIDDLYSYFRFLR 269
[Close]
BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: A0A1V9ZDT9_9STRA (SNF2 family DNA/RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZDT9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.660e-5
Identity = 54/185 (29.19%), Postives = 83/185 (44.86%), Query Frame = 1 
Query:   46 PQGT-TLLVTPTREEAIAWSELLGASSCGLSVLSYIMPLRERRRLTARQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHGVWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLRVP 597
            P+G  TL++ P     +A  E    +   LSV  Y    R+R R       +FDV+++TYD+L+ KE    V               +AG  R        + + EKQ         +S LH + W RV+ D A ++ N  SAR +A+  L+  ARWC+        I+N  + +  L +FL +P
Sbjct:  429 PRGRPTLIIAPL--SVLAQWEFEVKAKTSLSVGVYHGTGRKRFRHQP-DFCAFDVILSTYDVLRMKETAVPVA--------------SAGRSRDTSWIAAKRQREEKQL--------LSRLHKIHWERVILDEAHLIANMASARTQASFQLLANARWCVTGTP----IQNRLEDLHPLFKFLGIP 584
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LB47_ECTSI1.200e-6056.54SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KIY1_9PHAE7.370e-5853.95SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A2N9I951_FAGSY2.170e-729.35Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A1R1YAY0_9FUNG1.150e-627.70DNA repair protein RAD5 n=1 Tax=Smittium culicis T... [more]
A0A1R1XY58_9FUNG1.160e-627.70DNA repair protein RAD5 n=1 Tax=Smittium culicis T... [more]
A0A1D6PUW7_MAIZE9.080e-632.80Putative SNF2-domain/RING finger domain/helicase d... [more]
K7TWQ7_MAIZE9.170e-632.80Putative SNF2-domain/RING finger domain/helicase d... [more]
K7UB18_MAIZE9.990e-632.80Putative SNF2-domain/RING finger domain/helicase d... [more]
A0A6A3BWL5_HIBSY1.560e-529.30Glucose-induced degradation protein 8-like protein... [more]
A0A1V9ZDT9_9STRA1.660e-529.19SNF2 family DNA/RNA helicase n=1 Tax=Achlya hypogy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2257contigH-paniculata_contig2257:4595..8529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue9.2e-09
Seed eggNOG ortholog157072.XP_008869285.1
KEGG koko:K15083,ko:K15173
KEGG Pathwayko04918,map04918
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP binding
EggNOG OGsCOG0141@1,KOG4439@2759
Ec32 ortholog descriptionSNF2-related helicase domain protein
Ec32 orthologEc-27_005250.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03400
Exons4
Model size1255
Cds size1083
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2257.6010.1prot_H-paniculata_contig2257.6010.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2257 4745..8507 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.260913-UTR-H-paniculata_contig2257:4594..47441622929627.260913-UTR-H-paniculata_contig2257:4594..4744Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2257 4595..4744 +
1691480941.6549394-UTR-H-paniculata_contig2257:4594..47441691480941.6549394-UTR-H-paniculata_contig2257:4594..4744Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2257 4595..4744 +
1622929627.3332677-UTR-H-paniculata_contig2257:8507..85291622929627.3332677-UTR-H-paniculata_contig2257:8507..8529Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2257 8508..8529 +
1691480941.7058568-UTR-H-paniculata_contig2257:8507..85291691480941.7058568-UTR-H-paniculata_contig2257:8507..8529Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2257 8508..8529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.276428-CDS-H-paniculata_contig2257:4744..48191622929627.276428-CDS-H-paniculata_contig2257:4744..4819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2257 4745..4819 +
1691480941.664998-CDS-H-paniculata_contig2257:4744..48191691480941.664998-CDS-H-paniculata_contig2257:4744..4819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2257 4745..4819 +
1622929627.289397-CDS-H-paniculata_contig2257:5984..61701622929627.289397-CDS-H-paniculata_contig2257:5984..6170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2257 5985..6170 +
1691480941.6728902-CDS-H-paniculata_contig2257:5984..61701691480941.6728902-CDS-H-paniculata_contig2257:5984..6170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2257 5985..6170 +
1622929627.3051221-CDS-H-paniculata_contig2257:7085..72441622929627.3051221-CDS-H-paniculata_contig2257:7085..7244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2257 7086..7244 +
1691480941.6868465-CDS-H-paniculata_contig2257:7085..72441691480941.6868465-CDS-H-paniculata_contig2257:7085..7244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2257 7086..7244 +
1622929627.3199916-CDS-H-paniculata_contig2257:7844..85071622929627.3199916-CDS-H-paniculata_contig2257:7844..8507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2257 7845..8507 +
1691480941.6981664-CDS-H-paniculata_contig2257:7844..85071691480941.6981664-CDS-H-paniculata_contig2257:7844..8507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2257 7845..8507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2257.6010.1

>prot_H-paniculata_contig2257.6010.1 ID=prot_H-paniculata_contig2257.6010.1|Name=mRNA_H-paniculata_contig2257.6010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=361bp
MPLRERRRLTARQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRSCR
RAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHGVWWGRVVADGAEI
LVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLRVPA
EIALVEAAGCLFYSNRPSHVAPAPRSGSSYLSERNNNNNNDGDGSDGSHC
RHGGFSPCTPGGVRARARTLGLSRGRQEEEEIEEIEEERERQRQRDDREH
RNNSLETDKRVSVSAGCGKTSNGPKGWKSTQGREADRPRRRQGGRTGRSK
SPLGGRGGRMRGVPSRRIERGRSRGQGDGVSRGGGAGLGLRREDVTYVEK
ALCFRRVQDR*
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mRNA from alignment at H-paniculata_contig2257:4595..8529+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2257.6010.1 ID=mRNA_H-paniculata_contig2257.6010.1|Name=mRNA_H-paniculata_contig2257.6010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3935bp|location=Sequence derived from alignment at H-paniculata_contig2257:4595..8529+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTGTTCAGGGCGGGTTTTCCATACCATCCCTCGTCGGGCTTGCCACA
GGGGACGACGCTTTTGGTCACCCCCACGAGAGAGGAAGCAATCGCTTGGT
CGGAGCTTCTGGGAGCGTCCAGCTGCGGACTGTCGGTTTTGAGCTATATC
ATGCCCCTGAGAGAGAGGAGGCGGCTTACGGCGCGGCAGGTGGCATCTTT
CGACGTGGTGGTGACTACGTACGATGTGAGAGAGATGGAGAGAGAGAGAG
AGAGAGAGCAAGAAGAAAGAGGATTGGGGTTTGGGTCTGGATTCTATTGC
TTCGTCTTGTGTTGTGTGCTATTGTTGGTTGCCATTTTCTGTCTTTTGTT
GTGTTACGATTTATTTTTTCTTGTGAGGGCGGGGGGGATGCGGGTTCGGT
GTTTATCCTTTTATCCTTTTATCCTTTTATCCTTTTATCCTTTTATCCTT
TTATCCTTTTATCCTTTTATCCTGTTGTTTGTTTCTGCCTTCTTCCTTTT
TCTGTTGTTGTTCTGATCTTTATGGCTTTCACCGCATTTTGCTCGTTGAT
GTACTTAAAACACCTTCCTTCTCCACGATAATCATGGTCTGGGCGAACAC
TACTTCTGTTAAACCTATGGAGACAGCACCTGTTGAGACAGCCCCAGGAC
CACTTGTCCATGTTGCGCTTACCCGACTCAGCTAAACAATTTCGAATAGT
CTACCGGTTCTGCGGGACCGACCGATGCGTCGGTGCACTGATCTTGAAGC
ACCTGCACGACATCATGCTCATGGGTAGACAGAATCCTGTTCGCTCTTAT
GGAGCGCTGCTGTTTCTCTTCTTATTACTCAGCTTTTCCAAATCCACACC
CTGCCCACACCCCCATCTTGGGATGCTCTTGAAATCATGTTTATTGTCTG
ACCATGGTACTGTTGCAGCTTTCCTTGAGAAACACCGAACCGAGCCTCTT
TTTCTCTGCGTTCCCAAGAGCGTTCCACCTTTTGAAAATTGCTGGTGCTC
TGTTTACAAGGAATAATCATGACTTCCATGTCCCACGATTATGAGCTAAA
CTCAGCATAACTCCCCCAGTTTGTTGCAGGTCGTGCAGGGTAACTAATCC
AGCATCTTGGACATCCTCCATTTTGTTTTACTCGTCATTTGTCATGTTCT
TTTCTTTACTACACAGCTTTATCTTTTGCTACGATTGGCTCATTTTTTTG
CTCCATAACTATCACAATTTCTACTAACATTTTTGCCAAACCATGTTCTC
ATAGAGGTATAGTGTAGACGCTAGTATTGTACTGCTGCTGAACCTGAACC
TGAAGCTGGCCTCAGCAATTGGCGCATGCATATCTCCCTCCCCCATCCGC
GGGCCCACGTACCCCGATTCATCCGGACGGAATCAAACAGATACTGAAAG
CGAAAGAGGTGCCTCGGGTGGTGGAGCCGGAGGCCACTTCGCTCAAATCA
CCCCGGAGCTGCAGGCGAGCTGCCGGGGAGTGGCGGAGTAGAATCGTTGC
GGTCGAGGGACAGACTAAGACCGAGAAGCAGGCCGCAACGACGAAGATGA
GCAACGCTGTATCCTTGCTGCATGGGGTGAGTATTGAAGAAAGAGAGAGA
CGGATTTGCGAAGCATGAGTGGTGGAGCTGCTCTGATCGACACTAAAATA
TGCTGTAGTACATTTTGTACTTTTTGGCGGTGTGTTTCGTGCCCGTTGTA
TGTTAAGTTTTTTTTGCGATGGGGGGGTGGGAGTAAGTAGTGTAGGGTTG
ACTATCGATTGGGTCTCGGGGTAATTAATCCCAATACTGTTCATTTTGGT
CCTGTGCTGACGTTGTCGTGGCTCTTTCTCGCTATGAAACGCAAGCTAAC
TAACTGCGCACTGTTATTTTCAGCCTTAGGGTAATTCAAATATTCGACAT
TTGGAGCGCGTTTCATCCGTTCTGGCTTGTATTGCGAATCACAATTGGTC
ATGGGTTAAGAAGTGAAAGTATTATAGTAGTCGGATGTACGTAGCAGAAG
ATGAGAGAAAGAGGAGTATGTTTTTTTTTGTTTTTTTTTTCTTTCTCGAT
AAACAACACTTGGGGACAAAAAGAACGAAAGATTGTTGCGATACAACCAT
TTAGGGGTAGTAAGGGAGGATGAGGCGAGCATTATACGATTTTTTTATTT
TTTTTATTCCAATCTTGTGATGCACAGATTTTGACCTATGTGATCAAGAA
CAGCTCGATCTGCTACACGAAGTGCAGGGTACAAGAGTTCATGTGTTGAG
GAATAGACGTCTATTTTGATGATGAAAATCGTCAGAACACCACCGCCCCT
ATCCATGCGTAAACTTCGATAACGACCGCTCCAAAGTTACAGCGACCAGG
TGGAGCCCGTCCATGCCTCGATCGCCTCTCAATATTTGCCTGTGCGCTGC
TGAAAAATACAGGTACATTTCAGTCCCACATGTATTTACTATACTCGACT
CCCCTCCTTCATTAGACCCGTTTCGATTTCCGATTCCTCAGGTGTGGTGG
GGCCGTGTTGTAGCCGACGGAGCAGAAATCCTGGTCAATCCGCGGAGCGC
GCGAGCAGAAGCGGCATCAGGATTGGTAGGGAGAGCGCGTTGGTGTATGG
TTGATCGGGAGAACGTGGATGCCATAGAGAACTCCAGCGACCGCATGTGG
GTAAGTTGAAGGGCGGTCCGCGGGCTCGCGTGCTAGCTTGTTGTCCGTCA
GAATCGTGCCTCGGAGATGTTTTTGCTTGCTTGTTGTCTGTGGGAATTGT
GCCTCGGAGAAACTCGTCTTTGGTCCCTGTCCACTGTTTTTCAAACCAAC
CTCCGTTTTCCTCGTGCCCGTGCCCGTGCCCCCCGCCCCTCCCATCCCCG
GAGCTGTCCCAACAACAACAAAACGTTTCAACACCAATAACTGACCTTCT
CAACCCTAAACCTAAGAAACAAGCAACAAGCGACAAGTAAGGAAAAAACT
TTGCGTCAGTTCATTGTAATTCATAATTAATGCACGTCTGACTGCCATAC
TGTATATATATATATATATATATATATATATATAGGTTGATCTGGAGCCG
GGGCTCTTCCTATACTGTAGAGTAACTCATCTTCTTATTTTGGCGCGCTT
TTTACTCTTCGGCACTCTTTCCAACCCCCCTCCCCTCCTCTGAAGCTCCG
TCCTCTCCAGGATGCCTGGTCGATGGTACGACAACTATAGCATTCAAAAT
ATGACTACTCCCTCCTCCCTTGCCCTGTCGTGGCCTCGTCCCCAAAACAG
AGCCTTGTTCGATTCCTTCGCGTTCCCGCGGAGATAGCACTCGTTGAGGC
TGCGGGGTGCTTGTTCTACTCCAACAGACCCAGCCACGTGGCCCCCGCGC
CCCGCTCAGGCTCGAGTTATTTATCGGAGAGAAACAACAACAACAACAAC
GACGGCGACGGCAGCGACGGCAGCCACTGTAGGCATGGAGGATTCAGCCC
TTGTACCCCGGGAGGTGTGCGGGCGCGCGCTAGAACCCTGGGACTTTCGA
GAGGAAGGCAAGAAGAAGAAGAAATAGAAGAAATAGAAGAAGAGCGAGAA
CGACAACGACAACGAGATGACCGGGAACACCGGAATAATAGCCTGGAAAC
AGACAAGAGAGTGTCTGTGTCAGCGGGCTGCGGTAAGACTAGTAACGGAC
CCAAAGGGTGGAAATCTACGCAGGGTAGGGAAGCAGACCGCCCCCGGAGA
AGGCAAGGTGGGAGGACTGGAAGGTCGAAGTCTCCGCTTGGTGGCCGTGG
CGGACGTATGCGGGGGGTCCCCAGCAGGAGAATCGAGCGTGGTCGTAGTA
GGGGGCAGGGTGATGGGGTTAGCAGAGGAGGCGGCGCTGGGCTAGGGTTG
CGGAGAGAGGACGTAACTTATGTTGAGAAGGCGTTGTGCTTTCGGAGAGT
GCAGGATCGGTAAGGGTTGCAGCAGGTGGTGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2257:4595..8529+

>mRNA_H-paniculata_contig2257.6010.1 ID=mRNA_H-paniculata_contig2257.6010.1|Name=mRNA_H-paniculata_contig2257.6010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2166bp|location=Sequence derived from alignment at H-paniculata_contig2257:4595..8529+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCTGAGAGAGAGGAGGCGGCTTACGGCGCGGCAGGTGGCATCTTT
CGACGTGGTGGTGACTACGTACGATATGCCCCTGAGAGAGAGGAGGCGGC
TTACGGCGCGGCAGGTGGCATCTTTCGACGTGGTGGTGACTACGTACGAT
ATACTGAAAGCGAAAGAGGTGCCTCGGGTGGTGGAGCCGGAGGCCACTTC
GCTCAAATCACCCCGGAGCTGCAGGCGAGCTGCCGGGGAGTGGCGGAGTA
GAATCGTTGCGGTCGAGGGACAGACTAAGACCGAGAAGCAGGCCGCAACG
ACGAAGATGAGCAACGCTGTATCCTTGCTGCATGGGATACTGAAAGCGAA
AGAGGTGCCTCGGGTGGTGGAGCCGGAGGCCACTTCGCTCAAATCACCCC
GGAGCTGCAGGCGAGCTGCCGGGGAGTGGCGGAGTAGAATCGTTGCGGTC
GAGGGACAGACTAAGACCGAGAAGCAGGCCGCAACGACGAAGATGAGCAA
CGCTGTATCCTTGCTGCATGGGGTGTGGTGGGGCCGTGTTGTAGCCGACG
GAGCAGAAATCCTGGTCAATCCGCGGAGCGCGCGAGCAGAAGCGGCATCA
GGATTGGTAGGGAGAGCGCGTTGGTGTATGGTTGATCGGGAGAACGTGGA
TGCCATAGAGAACTCCAGCGACCGCATGTGGGTGTGGTGGGGCCGTGTTG
TAGCCGACGGAGCAGAAATCCTGGTCAATCCGCGGAGCGCGCGAGCAGAA
GCGGCATCAGGATTGGTAGGGAGAGCGCGTTGGTGTATGGTTGATCGGGA
GAACGTGGATGCCATAGAGAACTCCAGCGACCGCATGTGGAGCCTTGTTC
GATTCCTTCGCGTTCCCGCGGAGATAGCACTCGTTGAGGCTGCGGGGTGC
TTGTTCTACTCCAACAGACCCAGCCACGTGGCCCCCGCGCCCCGCTCAGG
CTCGAGTTATTTATCGGAGAGAAACAACAACAACAACAACGACGGCGACG
GCAGCGACGGCAGCCACTGTAGGCATGGAGGATTCAGCCCTTGTACCCCG
GGAGGTGTGCGGGCGCGCGCTAGAACCCTGGGACTTTCGAGAGGAAGGCA
AGAAGAAGAAGAAATAGAAGAAATAGAAGAAGAGCGAGAACGACAACGAC
AACGAGATGACCGGGAACACCGGAATAATAGCCTGGAAACAGACAAGAGA
GTGTCTGTGTCAGCGGGCTGCGGTAAGACTAGTAACGGACCCAAAGGGTG
GAAATCTACGCAGGGTAGGGAAGCAGACCGCCCCCGGAGAAGGCAAGGTG
GGAGGACTGGAAGGTCGAAGTCTCCGCTTGGTGGCCGTGGCGGACGTATG
CGGGGGGTCCCCAGCAGGAGAATCGAGCGTGGTCGTAGTAGGGGGCAGGG
TGATGGGGTTAGCAGAGGAGGCGGCGCTGGGCTAGGGTTGCGGAGAGAGG
ACGTAACTTATGTTGAGAAGGCGTTGTGCTTTCGGAGAGTGCAGGATCGG
TAAAGCCTTGTTCGATTCCTTCGCGTTCCCGCGGAGATAGCACTCGTTGA
GGCTGCGGGGTGCTTGTTCTACTCCAACAGACCCAGCCACGTGGCCCCCG
CGCCCCGCTCAGGCTCGAGTTATTTATCGGAGAGAAACAACAACAACAAC
AACGACGGCGACGGCAGCGACGGCAGCCACTGTAGGCATGGAGGATTCAG
CCCTTGTACCCCGGGAGGTGTGCGGGCGCGCGCTAGAACCCTGGGACTTT
CGAGAGGAAGGCAAGAAGAAGAAGAAATAGAAGAAATAGAAGAAGAGCGA
GAACGACAACGACAACGAGATGACCGGGAACACCGGAATAATAGCCTGGA
AACAGACAAGAGAGTGTCTGTGTCAGCGGGCTGCGGTAAGACTAGTAACG
GACCCAAAGGGTGGAAATCTACGCAGGGTAGGGAAGCAGACCGCCCCCGG
AGAAGGCAAGGTGGGAGGACTGGAAGGTCGAAGTCTCCGCTTGGTGGCCG
TGGCGGACGTATGCGGGGGGTCCCCAGCAGGAGAATCGAGCGTGGTCGTA
GTAGGGGGCAGGGTGATGGGGTTAGCAGAGGAGGCGGCGCTGGGCTAGGG
TTGCGGAGAGAGGACGTAACTTATGTTGAGAAGGCGTTGTGCTTTCGGAG
AGTGCAGGATCGGTAA
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