mRNA_H-paniculata_contig22567.6009.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22567.6009.1
Unique NamemRNA_H-paniculata_contig22567.6009.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22567.6009.1 vs. uniprot
Match: A0A6H5LAY0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAY0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.950e-26
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:   25 SYKVLDGGRGYEAGKPPGVKIESPPFLSDVARATATLKRSGSMFRVVLRAVGKGYDKAPDVLISPP 222
            SYKV +GGRGYEAG PP VKIE+PP+L+D ARATATL+RSGS+FRV LR+ GKGY  AP V ISPP
Sbjct:  254 SYKVTNGGRGYEAGHPPAVKIEAPPYLTDTARATATLRRSGSVFRVALRSPGKGYQTAPTVTISPP 319
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BLAST of mRNA_H-paniculata_contig22567.6009.1 vs. uniprot
Match: D7G8I8_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I8_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.690e-25
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:   25 SYKVLDGGRGYEAGKPPGVKIESPPFLSDVARATATLKRSGSMFRVVLRAVGKGYDKAPDVLISPP 222
            SYKV +GGRGYEAG PP VKIE+PP+L+D ARATATL+RSGS+FRV LR+ GKGY  AP V ISPP
Sbjct:  241 SYKVTNGGRGYEAGHPPAVKIEAPPYLTDTARATATLRRSGSVFRVALRSPGKGYQTAPTVTISPP 306
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22567.6009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAY0_9PHAE4.950e-2674.24EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7G8I8_ECTSI4.690e-2574.24N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22567contigH-paniculata_contig22567:3393..3614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue8.1e-21
Seed eggNOG ortholog2880.D7G8I8
KEGG koko:K15102
KEGG TC2.A.29.4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphate ion transmembrane transport
EggNOG OGsKOG0767@1,KOG0767@2759
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-14_003170.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04147
Exons1
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.0925887-CDS-H-paniculata_contig22567:3392..36141622929627.0925887-CDS-H-paniculata_contig22567:3392..3614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22567 3393..3614 -
1691480941.5806875-CDS-H-paniculata_contig22567:3392..36141691480941.5806875-CDS-H-paniculata_contig22567:3392..3614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22567 3393..3614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22567.6009.1prot_H-paniculata_contig22567.6009.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22567 3393..3614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22567.6009.1

>prot_H-paniculata_contig22567.6009.1 ID=prot_H-paniculata_contig22567.6009.1|Name=mRNA_H-paniculata_contig22567.6009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MLVCPTRNSYKVLDGGRGYEAGKPPGVKIESPPFLSDVARATATLKRSGS
MFRVVLRAVGKGYDKAPDVLISPP
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mRNA from alignment at H-paniculata_contig22567:3393..3614-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22567.6009.1 ID=mRNA_H-paniculata_contig22567.6009.1|Name=mRNA_H-paniculata_contig22567.6009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig22567:3393..3614- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGTCTGCCCTACCCGGAACAGCTACAAGGTGTTGGATGGAGGGCG
GGGCTACGAGGCGGGAAAACCGCCCGGCGTGAAGATCGAGTCTCCACCCT
TCCTCTCGGACGTGGCTAGAGCAACCGCCACGCTCAAGCGCTCGGGGAGC
ATGTTCAGGGTGGTGCTGCGGGCGGTGGGGAAGGGGTATGATAAGGCTCC
CGATGTCTTGATATCGCCGCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig22567:3393..3614-

>mRNA_H-paniculata_contig22567.6009.1 ID=mRNA_H-paniculata_contig22567.6009.1|Name=mRNA_H-paniculata_contig22567.6009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig22567:3393..3614- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGTCTGCCCTACCCGGAACAGCTACAAGGTGTTGGATGGAGGGCG
GGGCTACGAGGCGGGAAAACCGCCCGGCGTGAAGATCGAGTCTCCACCCT
TCCTCTCGGACGTGGCTAGAGCAACCGCCACGCTCAAGCGCTCGGGGAGC
ATGTTCAGGGTGGTGCTGCGGGCGGTGGGGAAGGGGTATGATAAGGCTCC
CGATGTCTTGATATCGCCGCCAATGCTGGTCTGCCCTACCCGGAACAGCT
ACAAGGTGTTGGATGGAGGGCGGGGCTACGAGGCGGGAAAACCGCCCGGC
GTGAAGATCGAGTCTCCACCCTTCCTCTCGGACGTGGCTAGAGCAACCGC
CACGCTCAAGCGCTCGGGGAGCATGTTCAGGGTGGTGCTGCGGGCGGTGG
GGAAGGGGTATGATAAGGCTCCCGATGTCTTGATATCGCCGCCA
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