mRNA_H-paniculata_contig22538.6000.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22538.6000.1
Unique NamemRNA_H-paniculata_contig22538.6000.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22538.6000.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 6.930e-46
Identity = 124/316 (39.24%), Postives = 170/316 (53.80%), Query Frame = 3
Query:    3 VAYYGLLQLFLMRRAVYLLVWDAGKEGN-----SETAAGGTTGELEALGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSYGGRAVSVEKVASLTSWARAGWWRDVVSSLYWGLAGIVGYKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWAFALSFLSDLSGGERHTVPSTLAEDQVPSQ----QTSSAEVPVKAR---EDLLSEWRRAI---RDKGLTVPNPESALEGALTIREYEGTVLSLGSYIFLDVGWLAKVLEPVLNHKGVEQRGASRMFGD 905
            VAY GLLQ+FL  RAV +LV +AGK G      S    G    +LE L +  WLR+ S R+P+ D+ILV  KCDL      +A +  +R+E AC  WL+ +   G + V +E   SLTS    G      SS      G    K GW CDWR   AD +  PSL++R++ K  G  +R  +MVLP+SW  AL+ L  L  G R  V   L +   P +    +T+  E  +      EDL  +W+  +      G+TV N ++ALEGAL IRE++G+++    +IFLDV WLAK+L+P+LNHK  E        GD
Sbjct:  253 VAYTGLLQMFLTPRAVCVLVCNAGKFGQQTRSESNDQVGEDCRKLEELRVCDWLRSISRRVPNNDVILVATKCDLAG---GNAGKIGARMEHACRRWLSSWVRNGLQPVRLEPCVSLTSCFETGVGEHGESS-----TGSHELKGGWACDWRD-MADGNPSPSLLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHG-RDPVEVVLRKSPDPDRGDATETARGETAMYQGITVEDLSIKWQETVDGLERSGVTVTNAKNALEGALLIREFDGSLIRYEKFIFLDVVWLAKILKPLLNHKDQETFDGLVSLGD 558          
BLAST of mRNA_H-paniculata_contig22538.6000.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 7.010e-42
Identity = 115/317 (36.28%), Postives = 167/317 (52.68%), Query Frame = 3
Query:    3 VAYYGLLQLFLMRRAVYLLVWDAGK-----EGNSETAAGGTTGELEALGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSYGGRAVSVEKVASLTSWARAGWWRDVVSSLYWGLAGIVGYKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWAFALSFLSDLSGGERHTVPSTLAEDQVPSQQTSSAEVPVKAR--------EDLLSEWRRAIRD---KGLTVPNPESALEGALTIREYEGTVLSLGSYIFLDVGWLAKVLEPVLNHKGVEQRGASRMFGD 905
            VAY GLLQ+FL  R+V +LV +AG+       ++         +LE L +  WLR+ S R+P  D+ILV  KCDL + + +   Q   R+E AC  WL+ +   G  +V +E+  SLTS    G      S       G    KQGW CDWR    D   P SL+ R++ K     +R  +MVLP+SW  AL+FL  L  G RH V   + +   P   + + E              E+L + W+  + +   +G+TV N E+ALEGAL+IRE++G+++    ++FLDV WLA++L+P+LNHK  E        GD
Sbjct:  233 VAYTGLLQMFLTPRSVCVLVCNAGEFRQQLGSDNIDQVEEDCRKLEGLRVCDWLRSISCRVPGNDVILVATKCDLVNGNVEETGQ---RIEHACRTWLSSWVRNGMDSVRLERHVSLTSCFPIG-----ASEHGESRRGNHALKQGWACDWRDVEGDMSSP-SLLYRLVNKPDQGGLRGVQMVLPRSWDVALTFLDSLEYG-RHPVEMVMLKS--PDSDSGATETAGGTTTVYQGITVEELSARWQGTVDELGRRGITVTNAENALEGALSIREFDGSLVCHEKFVFLDVVWLARILKPLLNHKDQEMFDGRVNLGD 537          
BLAST of mRNA_H-paniculata_contig22538.6000.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 7.820e-42
Identity = 126/331 (38.07%), Postives = 173/331 (52.27%), Query Frame = 3
Query:    3 VAYYGLLQLFLMRRAVYLLVWDAGKEGNSETAAGGTT----------GELEALGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSYGGRAVSVEKVASLTSWARAGWWRDVVSSLYWGLAGIVGYKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWAFALSFLSDLSGGERHTVPSTL-----------AEDQVPSQQTSSAEVPVKAREDLLSEWRR---AIRDKGLTVPNPESALEGALTIREYEGTVLSLGSYIFLDVGWLAKVLEPVLNHKGVEQ--RGASRMFGDAELT 917
            VAY GLLQ+FL  RAV LLV D G  G  +    GT            +L+ L +  WLR+ SFR+PD D+++V  KCDL +        AA R+E A  EWL  +S  G  AV VE   SLTS        D  ++L  G          W CDWR G + E +P SL++R++    G+ VR   +VLP+SW  AL  L  L  G R+ V S             A + VP+    +  V    R DL ++W     A+   G++V  P+ ALEGAL IRE+EG+++   +Y+FLDV WLA++L+P+LNH+  E   RG   + GD  +T
Sbjct:  343 VAYTGLLQMFLSPRAVSLLVCDLGAFGQRD----GTLIHSDQLKKDLSKLQELRVCDWLRSLSFRIPDSDVVVVATKCDLAA---GMGTDAAGRIEGAIGEWLESWSGAGMNAVHVEDGVSLTSCFPPTPNEDGGAAL--GKRKSPDEDSTWACDWREGVSVESQP-SLLHRVMYNSKGN-VRGASLVLPRSWNIALEVLDALGSG-RNPVESAQQNVLASGGPKGATEVVPAVYQRNQGVGGLTRADLSTKWNEVVAALEGDGVSVVKPDHALEGALLIREHEGSLVRHETYVFLDVTWLAQILKPLLNHRDDEDPLRGDVSL-GDTGIT 660          
BLAST of mRNA_H-paniculata_contig22538.6000.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 4.240e-41
Identity = 117/335 (34.93%), Postives = 173/335 (51.64%), Query Frame = 3
Query:    3 VAYYGLLQLFLMRRAVYLLVWDAGKEGNSETA--AGGTTGE---LEALGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARF-------------------SSYGGRAVSVEKVASLTSWARAGWWRDVVSSLYWGLAGIVGYKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWAFALSFLSDLSGGERHTVPSTLAEDQVPSQQTSSAEVPVKAR-------EDLLSEWRRAIRD---KGLTVPNPESALEGALTIREYEGTVLSLGSYIFLDVGWLAKVLEPVLNHKGVEQRGASRMFGD 905
            VAY GLLQ+FL  R+V +LV +AG+ G    +   GG  G+   LE L +  WLR+ S R+PD D+ILV  KCDL      +A +  SR+E AC  WL+ +                      G + V +E    LTS          V       AG  G K GW CDWR    D+  PPS ++R++ K  G  +R  + VLP+SW  AL+ L  L  G R  V + L +   P  + ++     K         E+L ++W+  + +   +G+TV N ++ALEGAL++RE++G+++   +++FLDV WLA++L+P+LNHK  E        GD
Sbjct:   69 VAYTGLLQMFLTPRSVCVLVCNAGEFGQRRDSEHCGGVEGDCRKLEELRVCDWLRSISRRIPDNDVILVATKCDLAG---GNAREIGSRMEKACRTWLSGWVRNAXXXXXXXXXXXXXXXXXXGMQPVRLEPHVCLTSSLPVR-----VDEHGDRSAGNHGSKGGWACDWRD-EEDDQPPPSFLHRLVNKPDGRGLRGTQTVLPRSWDIALTVLEALEHG-RDPVEAVLGKSPDPDGEDAAETAGGKTDVYQGITVEELGTKWQETVDELERRGITVTNAKNALEGALSVREFDGSLVRRENFVFLDVVWLARILKPLLNHKDQETFDGRVNLGD 393          
BLAST of mRNA_H-paniculata_contig22538.6000.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.560e-40
Identity = 114/317 (35.96%), Postives = 169/317 (53.31%), Query Frame = 3
Query:    3 VAYYGLLQLFLMRRAVYLLVWDAGKEGNS-ETAAGGTTGE----LEALGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSYGGRAVSVEKVASLTSW--ARAGWWRDVVSSLYWGLAGIVGYKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWAFALSFLSDLSGGE---RHTVPSTLAEDQVPSQQTSSAEVPVKAR---EDLLSEWRRAIRD---KGLTVPNPESALEGALTIREYEGTVLSLGSYIFLDVGWLAKVLEPVLNHKGVEQRGASRMFGD 905
            VAY GLLQ+FL  R+V +LV +A   G   E    G   E    LE L +  WLR+ S R+P  D+ILV  KCDL      +A +   RVE AC  WL+ +  +G + V +E   S TS   A  G   +V +  +       G K  W CDW   + D+  PPSL++R++ K  G  +R  +MVLP+SW   L  L  L  G       +  +L  D+  + +T+     V      EDL  +W++ + +   +G+ V N ++ALEGAL+IRE++G+++   +++FLDV WLA++L+P+LNHK  E        GD
Sbjct:  203 VAYTGLLQMFLTPRSVCVLVCNAAAFGQQLERKNSGEVEEDCRKLEELRVCDWLRSISRRVPHNDVILVVTKCDLAG---GNAAEIGERVEHACRTWLSSWVRHGMQPVQLEPGVSFTSCFPAEGGQHGEVGTENH-------GSKGDWACDWHDMK-DDHPPPSLLHRLVNKPDGGGLRGAQMVLPRSWDTVLIVLDSLEQGRDPVEVVLRKSLHPDRGDATETAGGNTVVYQGITVEDLSKKWQKIVDELERRGIIVTNAKNALEGALSIREFDGSLVRHETFVFLDVLWLARILKPLLNHKDQETFDGRVNLGD 508          
BLAST of mRNA_H-paniculata_contig22538.6000.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 5.340e-40
Identity = 120/331 (36.25%), Postives = 176/331 (53.17%), Query Frame = 3
Query:    3 VAYYGLLQLFLMRRAVYLLVWDA---GKEGNSETAAGGTTGE----LEALGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSYGGRAVSVEKVASLTSWARAGWWRDVVSSLYWGLAGIVGYKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWAFALSFLSDLSGGER--HTVPSTLAE-DQVPSQQTSSAEVPVKAR---EDLLSEWRRAI---RDKGLTVPNPESALEGALTIREYEGTVLSLGSYIFLDVGWLAKVLEPVLNHKGVEQRGASRMFGDAELTEPWHSHSLQI 947
            VAY GLLQ+FL  R+V +LV +A   G++   +T  GG   E    LE L +  WLR+ S R+P+ D+ILV  KCDL      +A +   R+E A   WLA +   G + V +E    LTS   +    +   S      G    ++GW CDWR  R D+  PP L++R++ K  G  +R  +MVLP+SW  AL+ L  L  G      V   LAE D+  + +T++ +  V      E L  +W+ A+     +G+ V N ++ALEGAL+IRE++G+++    ++FLDV WLA++L+P+LNHK  E        GD   T       L I
Sbjct:  297 VAYTGLLQMFLTPRSVCVLVCNAEAFGQQRGDDT--GGQVKEDCRKLEELRVCDWLRSVSRRVPNNDVILVATKCDLVG---GNAEEFGRRIEQATRTWLASWVHDGMQPVRLEPGVCLTSCCASAVGENGEKS-----TGHNASERGWACDWRDDR-DDMPPPGLVHRLVNKPDGSGLRGTQMVLPRSWDIALTVLEALERGRDPVEVVVEHLAEPDREDATRTAARQTGVYQGITVEALRVKWQEAVVGLARRGVNVTNAKNALEGALSIREFDGSLVRHEMFVFLDVVWLARILKPLLNHKDEETFDGLVNLGDTGDTRVTLEDPLDI 616          
BLAST of mRNA_H-paniculata_contig22538.6000.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 6.950e-40
Identity = 115/304 (37.83%), Postives = 162/304 (53.29%), Query Frame = 3
Query:    3 VAYYGLLQLFLMRRAVYLLVWDAGKEGNSETAAGGTTGE-----LEALGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSYGGRAVSVEKVASLTSWARAGWWRDVVSSLYWGLAGIVGYKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWAFALSFLSDLSGGERHTVPSTLAEDQVPSQQTSSAEVPVKAR--------EDLLSEWRRAIRD---KGLTVPNPESALEGALTIREYEGTVLSLGSYIFLDVGWLAKVLEPVLNHK 866
            VAY GLLQ+FL  R+V +LV +AG+ G    +      E     L+AL +  WLR+ S R+P  D+ILV  KCDL S    +A +   R+E AC  WL+ +   G   V +E   SLTS    G      S+      G    KQGW CDWR    D+  P SL+ R++ K     +R  +MVLP+SW  AL+ L  L  G R  V   L +   P  +    E  V           E+L + WR  + +   +G+ V N E+ALEGAL+IRE++G+++    ++FLDV WLA++L+P+LNHK
Sbjct:  184 VAYTGLLQMFLTPRSVCVLVCNAGEFGQQLGSDNVDQVEEDCRKLQALRVCDWLRSISRRVPGNDVILVATKCDLVS---GNAEETGRRLEHACRMWLSTWVRNGMDPVRLEPHVSLTSCFPIGDGEHGESN-----TGSDASKQGWACDWRHVEGDKSSP-SLLYRLVNKPDEGGLRGVQMVLPRSWDIALTVLEALEHG-RDPVEMVLLKS--PDSERRPTETGVGKTNVYQAIKVEELGTNWRETVDELGKRGIVVTNAENALEGALSIREFDGSLVRHEKFVFLDVVWLARILKPLLNHK 475          
BLAST of mRNA_H-paniculata_contig22538.6000.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.890e-39
Identity = 115/312 (36.86%), Postives = 163/312 (52.24%), Query Frame = 3
Query:    3 VAYYGLLQLFLMRRAVYLLVWDAGKEGNSETAAGGTTGE-----LEALGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSYGGRAVSVEKVASLTSWARAGWWRDVVSSLYWGLAGIVGYKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWAFALSFLSDLSGGERHTVPSTLAEDQVPSQQTSSAEVPVKAR---EDLLSEWRRAIRD---KGLTVPNPESALEGALTIREYEGTVLSLGSYIFLDVGWLAKVLEPVLNHKGVEQRGASRMFGD 905
            VAY GLLQ+FL  R+V +LV +AG+ G    +      E     LEAL +  WLR+ S R+PD ++ILV  KCDL      +A +   R+E AC  WL+ ++     +V +E    LTS    G      SS    L+     K  W CDWR     E  P SLI R++ K     +R  +MVLP+SW  AL+FL  L  G        L         T +A+  V      E+L ++W+  +     +G+TV N E+ALEGAL+IRE++G+++    ++FLDV WLA++L+P+LNHK  E        GD
Sbjct:  404 VAYTGLLQMFLTPRSVCVLVCNAGEFGEQLGSDNIDQVEEDCRKLEALRVCNWLRSISRRVPDTEVILVATKCDLAG---GNAWEIGRRMEKACRRWLSSWACRNMLSVRLEPGVCLTSCFPVGAGEHGESSSENFLS-----KSCWACDWRDVGGGEPSP-SLIYRLVNKPDKGGLRGVQMVLPRSWDIALTFLDSLEHGRDPVEMVILKSPDSDRGATETAKTTVYQGITVEELSAKWQETVDGLGRRGITVTNAENALEGALSIREFDGSLVPHEKFVFLDVVWLARILKPLLNHKDQEMFDGRVNLGD 706          
BLAST of mRNA_H-paniculata_contig22538.6000.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 2.550e-39
Identity = 115/307 (37.46%), Postives = 171/307 (55.70%), Query Frame = 3
Query:    3 VAYYGLLQLFLMRRAVYLLVWDAGKEGNSETA--AGGTTGE----LEALGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSYGGRAVSVEKVASLTSW--ARAGWWRDVVSSLYWGLAGIVGYKQGWPCDWRTGRADEDRP-PSLINRIIRKGPGDSVRAEKMVLPQSWAFALSFLSDLSGGERHTVPSTLAEDQVPSQQTSSAEVPVKAR-------EDLLSEWRRAIRD---KGLTVPNPESALEGALTIREYEGTVLSLGSYIFLDVGWLAKVLEPVLNHK 866
            VAY GLLQ+FL  R+V +LV +AG+ G    +   G    E    LE L +  WLR+ S R+PD D+ILV  KCDL      +A +  SR+E++C  WL+ +   G + V +E    LTS    R G   +         AG   +K GW CDWR    ++D+P PS ++R++ K  G  +R  +MVLP+SW  AL+ L  L  G R  V   L +   P +     E   KA        E+L ++W+  + +   +G+TV N  +ALEGAL+IRE++G+++    ++FLDV WL+++L+P+LNHK
Sbjct:  467 VAYTGLLQMFLTPRSVCVLVCNAGEFGQRRGSEDCGEVEQEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLVG---GNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFPIRVGEHGER-------SAGNHVWKGGWACDWRN--VEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDVALAVLEALEHG-RDPVEVVLRKSPEPDR-GDETETGGKADVYQGITVEELGTKWQETVDELERRGITVTNMMNALEGALSIREFDGSLVRHEKFVFLDVVWLSRILKPLLNHK 759          
BLAST of mRNA_H-paniculata_contig22538.6000.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 4.620e-39
Identity = 116/327 (35.47%), Postives = 171/327 (52.29%), Query Frame = 3
Query:    3 VAYYGLLQLFLMRRAVYLLVWDAGKEGNSETAAGGTT------GELEALGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSYGGRAVSVEKVASLTSWARAGWWRDVVSSLYWGLAGIVGYKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWAFALSFLSDLSGGERHTVPSTL-----------AEDQVPSQQTSSAEVPVKAREDLLSEWR---RAIRDKGLTVPNPESALEGALTIREYEGTVLSLGSYIFLDVGWLAKVLEPVLNHKGVEQ--RGASRMFGDAELT 917
            VAY GLLQ+FL  RAV LLV D G  G  + +   +        +L+ L +  WLR+ SFR+PD D+++V  KCDL +     A  AA+R+      W+  +S     AV VE   +LTS   +    D  ++L  G       +  W CDW  G   E +P SL++R++    G+ +R   +VLP+SW   L  L  L  G R  V S             A + VP+    +  V    R DL ++W     A+ + G+++ NP+ ALEGAL IRE+EG+++   +Y+FLDV WLA++L+P+LNH+  E   RG   + GD  +T
Sbjct:  307 VAYTGLLQMFLSPRAVSLLVCDTGAFGQRDGSLTDSDQLKKDLNKLQELRVCDWLRSLSFRIPDSDVVMVATKCDLAA---GMAADAAARMAGGAGNWIESWSDAQMTAVRVEDGVNLTSCFASTPNEDGGAAL--GTRESPEEQSTWACDWSDGMCVESQP-SLLHRVMYNNKGE-LRGASLVLPRSWNIGLGVLDALGSG-RDPVESAQQMVLASGGPKGAAEVVPAVYQRNQGVGGLTRADLSTKWNDVVAALEEDGVSIVNPDHALEGALLIREHEGSLVRHETYVFLDVTWLAQILKPLLNHRDDEDPLRGDVSL-GDTGIT 624          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22538.6000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSZ8_9PHAE6.930e-4639.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L650_9PHAE7.010e-4236.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL98_ECTSI7.820e-4238.07LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K1K4_9PHAE4.240e-4134.93Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G431_ECTSI1.560e-4035.96LRR-GTPase of the ROCO family, incomplete sequence... [more]
D7FUC9_ECTSI5.340e-4036.25LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FZA1_ECTSI6.950e-4037.83LRR-GTPase of the ROCO family, incomplete sequence... [more]
D8LJS7_ECTSI1.890e-3936.86LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LF46_ECTSI2.550e-3937.46LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FL89_ECTSI4.620e-3935.47LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22538contigH-paniculata_contig22538:296..3269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue3.4e-36
Seed eggNOG ortholog2880.D7FL98
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size1098
Cds size930
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22538.6000.1prot_H-paniculata_contig22538.6000.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22538 331..3136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.1512597-UTR-H-paniculata_contig22538:295..3301622929626.1512597-UTR-H-paniculata_contig22538:295..330Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22538 296..330 +
1691480941.2050462-UTR-H-paniculata_contig22538:295..3301691480941.2050462-UTR-H-paniculata_contig22538:295..330Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22538 296..330 +
1622929626.23118-UTR-H-paniculata_contig22538:3136..32691622929626.23118-UTR-H-paniculata_contig22538:3136..3269Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22538 3137..3269 +
1691480941.24243-UTR-H-paniculata_contig22538:3136..32691691480941.24243-UTR-H-paniculata_contig22538:3136..3269Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22538 3137..3269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.1738758-CDS-H-paniculata_contig22538:330..8901622929626.1738758-CDS-H-paniculata_contig22538:330..890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22538 331..890 +
1691480941.2190673-CDS-H-paniculata_contig22538:330..8901691480941.2190673-CDS-H-paniculata_contig22538:330..890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22538 331..890 +
1622929626.1968484-CDS-H-paniculata_contig22538:1027..12041622929626.1968484-CDS-H-paniculata_contig22538:1027..1204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22538 1028..1204 +
1691480941.2268803-CDS-H-paniculata_contig22538:1027..12041691480941.2268803-CDS-H-paniculata_contig22538:1027..1204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22538 1028..1204 +
1622929626.2161393-CDS-H-paniculata_contig22538:2943..31361622929626.2161393-CDS-H-paniculata_contig22538:2943..3136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22538 2944..3136 +
1691480941.2344356-CDS-H-paniculata_contig22538:2943..31361691480941.2344356-CDS-H-paniculata_contig22538:2943..3136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22538 2944..3136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22538.6000.1

>prot_H-paniculata_contig22538.6000.1 ID=prot_H-paniculata_contig22538.6000.1|Name=mRNA_H-paniculata_contig22538.6000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=310bp
MRRAVYLLVWDAGKEGNSETAAGGTTGELEALGILPWLRAFSFRLPDGDI
ILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSYGGRAVSVEKVAS
LTSWARAGWWRDVVSSLYWGLAGIVGYKQGWPCDWRTGRADEDRPPSLIN
RIIRKGPGDSVRAEKMVLPQSWAFALSFLSDLSGGERHTVPSTLAEDQVP
SQQTSSAEVPVKAREDLLSEWRRAIRDKGLTVPNPESALEGALTIREYEG
TVLSLGSYIFLDVGWLAKVLEPVLNHKGVEQRGASRMFGDAELTEPWHSH
SLQIQTTRA*
back to top

mRNA from alignment at H-paniculata_contig22538:296..3269+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22538.6000.1 ID=mRNA_H-paniculata_contig22538.6000.1|Name=mRNA_H-paniculata_contig22538.6000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2974bp|location=Sequence derived from alignment at H-paniculata_contig22538:296..3269+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGCCTACTATGGCCTCCTTCAGCTGTTCTTGATGCGCCGAGCGGTG TATCTCCTGGTGTGGGATGCAGGTAAGGAAGGGAACAGTGAAACAGCCGC GGGTGGGACCACGGGTGAGCTTGAGGCACTGGGTATCCTCCCGTGGCTGC GAGCGTTTTCTTTCCGCCTTCCGGATGGTGACATCATCCTCGTCGGTAAC AAGTGCGATTTACGCTCCCGTTCACAGGACTCGGCAGTCCAAGCGGCCTC GAGGGTAGAGTCTGCTTGCTGCGAGTGGCTGGCTCGGTTTTCTTCGTACG GTGGCCGCGCAGTCAGTGTTGAGAAGGTCGCAAGCCTCACCAGTTGGGCT CGTGCTGGTTGGTGGCGAGACGTCGTGTCCAGCTTGTATTGGGGTCTAGC GGGGATAGTGGGGTACAAACAAGGGTGGCCTTGTGATTGGCGCACGGGGA GGGCGGATGAGGATAGGCCCCCGAGCCTTATCAACCGCATCATCCGCAAG GGTCCGGGTGACTCCGTTCGGGCAGAGAAAATGGTGTTGCCACAAAGTTG GGCCTTTGCCCTGTCTTTTCTCAGCGACCTGAGCGGGGGCGAAAGGTGCG TGCGCGTTTGTTGATGGTGAGGTGATATCTTTGAATGGGGCTCCCAGCTG TGGCTTTGATGATAGTTTCACGTGTTCGTGTTGTAACCTCGCCTACTCAT GGGTAGTCATCACTTTCCACCACCATTTGCAGGCACACTGTCCCTTCAAC GTTGGCGGAAGATCAAGTGCCATCACAGCAGACGTCGAGCGCCGAAGTCC CCGTCAAGGCGCGCGAGGACCTGCTAAGTGAGTGGAGGCGTGCGATTAGA GACAAAGGGCTGACTGTCCCGAACCCCGAGAGCGCGTTGGAAGGGGCGCT TACCATCAGGTCTGATTTAAATTCATATCGTGGGTACCGTATCCACGTAA GGTATCAATCTATGAAGGATATAGGCACAATTCATTTTCTATTCAGTTGA GCATGACGCTGCGCAATGGTTCAATGGCGCTGTACCGGGTGATGCGGGAA TTGCGCCGCACTGTAGGAACAAGCTCGGGTGATGGTCAAAATACACCACG GAGCAGGCTAAATCCAAATATGTGCAATTTCGAGCTTTTACCTAGGCAAG GGGCATATGATATACACGGAACAGGTAGAAGCGGAGGTGTTGCAGTGCCG TTTTTGTGGCAAAGTCGTGGATAATTTTTTGGTTTTAACAGCGAAACCTC TCTCAATTTTCCGCGACTTCGTCTGAATTCAGAGCACTCACCTATGATAC GACGTTCGACGGACAATTGCCCAAATGTATCACATAGTTTTTCCAGCGGC GACCGAGAAAATGGCAAAAAAATGGTTGCTTGGTCGTTTTCTGTGTGATG GCTTTTACTCGACAACCCCCGATGAATACATTGAAACGTGCGACAAATGG TTACTCTTCTTCGCCACTAGAAGCGTGCGTTTTTCTTATTTTCGAGAAAC CCTCGTTGCCGAGACAACGCCGTATTTTTGTTGTCATATTTTGGAACCAA ACGCAGGGTATGCCCTAGAACTTGTCTCCGGAGTAACATGTCAAAACGGT AAGCCAGGAAATCCACTCAAACGTTTTGAAGCGTTCCAAGTCGTGCGTCC GTTTGCTGCGCATTATTAATATGAGTTCGGCTTGCTCGAAGTGATTTCAA TGCTTCGACGAGTGAACCTCACCTTTGTGGGATGCTTTACCGGCAGAACG ACAAGGGGGAAACTGTAACTTCTGCACACGACGTGTCCAGACACGATTAC CTCTGCTCTGTGTCGTCCAAATCTGACCAGAGTGGTCAGCCACTGTCGTA AGCTAATTGTCTCATATTCTGTCAGTACCGTAGCGAACAAGCAAAGTGAT CAGCTGCTGCGCGAACGATACTATATATCAAGCATGTACTGTGCACATTT TACTTTTGATCATGCGTTGCGATGGGATGGCGTAACGGGTCTGATACTGG GTCGTAGTTACGCAAGTCCTTGTGGCAAATTGCCGTATTAAACAGCTTCG ATTCACGTGATGAAGGTTTCTGTGACCCCCATGGAGACCAATCTTGAGCG GAACTAGTACGTCACTAAAGAGCTGAGATTTCTTGGAGCTGAACAAGCCC AGCTACGGTGATCCAGTTTCCCTGTACATGCCTCCATTCCGGCTACTAGC ATCGCGCGACGTTTGCTCAGGATGGATGCTCCGATTTGTACCTGCTCGTT CCGTTGCCAAGAGTGATCAGTTATTTTGGAACAGGTGTCGTTTAGAACGG TATTGCACAATCCCTTTGGTGCCAAATATGTGGACCTTGAAGGGCTGCAG TATGGACACATGATGCGAATGTCCGTTGAAGTTTGAGAATGAATTGACGC TGTGACCGATTTCCTTCATGTACCCCCACTGTGTACATGTGGTTCCATAT GTGTGCACAGTATCGTCAACAGACAAATGGCTCGATCGAGGTGGAATCTG CGCTGGCACTCTGTCGCGGACACTGTTGCATGTCCATTTTTGACTGCATA TATGCGAGTCGGGGTTGATGGCATCGGATATTATTAATTAGATGTTCCTC TGGATTTGTGTGGAATATCTAATTTTGGAAACTTCTTTGCTACCGCAGGG AATACGAGGGGACAGTGCTGTCGCTCGGAAGTTACATTTTCCTCGATGTG GGCTGGTTGGCGAAGGTGCTCGAGCCAGTGCTGAATCACAAGGGTGTTGA GCAGAGGGGTGCGTCGCGTATGTTCGGAGATGCGGAGCTGACGGAGCCGT GGCATAGTCACTCCCTACAGATTCAAACGACCCGCGCTTGAGCGGTTTAG TCAGAGTGTCAGCCGGTTGGTCCTCACCCTTCATGTATTCTACCCTTGAA ACTTTCCTCGCAATCAACTCGCGAATGAAGTGATAGCTTACGTCTATGTG CTTGCTCCTACCAGCAATAGTTGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22538:296..3269+

>mRNA_H-paniculata_contig22538.6000.1 ID=mRNA_H-paniculata_contig22538.6000.1|Name=mRNA_H-paniculata_contig22538.6000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1860bp|location=Sequence derived from alignment at H-paniculata_contig22538:296..3269+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCGAGCGGTGTATCTCCTGGTGTGGGATGCAGGTAAGGAAGGGAA
CAGTGAAACAGCCGCGGGTGGGACCACGGGTGAGCTTGAGGCACTGGGTA
TCCTCCCGTGGCTGCGAGCGTTTTCTTTCCGCCTTCCGGATGGTGACATC
ATCCTCGTCGGTAACAAGTGCGATTTACGCTCCCGTTCACAGGACTCGGC
AGTCCAAGCGGCCTCGAGGGTAGAGTCTGCTTGCTGCGAGTGGCTGGCTC
GGTTTTCTTCGTACGGTGGCCGCGCAGTCAGTGTTGAGAAGGTCGCAAGC
CTCACCAGTTGGGCTCGTGCTGGTTGGTGGCGAGACGTCGTGTCCAGCTT
GTATTGGGGTCTAGCGGGGATAGTGGGGTACAAACAAGGGTGGCCTTGTG
ATTGGCGCACGGGGAGGGCGGATGAGGATAGGCCCCCGAGCCTTATCAAC
CGCATCATCCGCAAGGGTCCGGGTGACTCCGTTCGGGCAGAGAAAATGGT
GTTGCCACAAAGTTGGGCCTTTGCCCTGTCTTTTCTCAGCGACCTGAGCG
GGGGCGAAAGATGCGCCGAGCGGTGTATCTCCTGGTGTGGGATGCAGGTA
AGGAAGGGAACAGTGAAACAGCCGCGGGTGGGACCACGGGTGAGCTTGAG
GCACTGGGTATCCTCCCGTGGCTGCGAGCGTTTTCTTTCCGCCTTCCGGA
TGGTGACATCATCCTCGTCGGTAACAAGTGCGATTTACGCTCCCGTTCAC
AGGACTCGGCAGTCCAAGCGGCCTCGAGGGTAGAGTCTGCTTGCTGCGAG
TGGCTGGCTCGGTTTTCTTCGTACGGTGGCCGCGCAGTCAGTGTTGAGAA
GGTCGCAAGCCTCACCAGTTGGGCTCGTGCTGGTTGGTGGCGAGACGTCG
TGTCCAGCTTGTATTGGGGTCTAGCGGGGATAGTGGGGTACAAACAAGGG
TGGCCTTGTGATTGGCGCACGGGGAGGGCGGATGAGGATAGGCCCCCGAG
CCTTATCAACCGCATCATCCGCAAGGGTCCGGGTGACTCCGTTCGGGCAG
AGAAAATGGTGTTGCCACAAAGTTGGGCCTTTGCCCTGTCTTTTCTCAGC
GACCTGAGCGGGGGCGAAAGGCACACTGTCCCTTCAACGTTGGCGGAAGA
TCAAGTGCCATCACAGCAGACGTCGAGCGCCGAAGTCCCCGTCAAGGCGC
GCGAGGACCTGCTAAGTGAGTGGAGGCGTGCGATTAGAGACAAAGGGCTG
ACTGTCCCGAACCCCGAGAGCGCGTTGGAAGGGGCGCTTACCATCAGGCA
CACTGTCCCTTCAACGTTGGCGGAAGATCAAGTGCCATCACAGCAGACGT
CGAGCGCCGAAGTCCCCGTCAAGGCGCGCGAGGACCTGCTAAGTGAGTGG
AGGCGTGCGATTAGAGACAAAGGGCTGACTGTCCCGAACCCCGAGAGCGC
GTTGGAAGGGGCGCTTACCATCAGGGAATACGAGGGGACAGTGCTGTCGC
TCGGAAGTTACATTTTCCTCGATGTGGGCTGGTTGGCGAAGGTGCTCGAG
CCAGTGCTGAATCACAAGGGTGTTGAGCAGAGGGGTGCGTCGCGTATGTT
CGGAGATGCGGAGCTGACGGAGCCGTGGCATAGTCACTCCCTACAGATTC
AAACGACCCGCGCTTGAGGAATACGAGGGGACAGTGCTGTCGCTCGGAAG
TTACATTTTCCTCGATGTGGGCTGGTTGGCGAAGGTGCTCGAGCCAGTGC
TGAATCACAAGGGTGTTGAGCAGAGGGGTGCGTCGCGTATGTTCGGAGAT
GCGGAGCTGACGGAGCCGTGGCATAGTCACTCCCTACAGATTCAAACGAC
CCGCGCTTGA
back to top