mRNA_H-paniculata_contig2251.5992.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2251.5992.1
Unique NamemRNA_H-paniculata_contig2251.5992.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2251.5992.1 vs. uniprot
Match: D7FWM5_ECTSI (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWM5_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 9.550e-21
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   61 SGFSKGAIMSLRMKNFLSYDEAVATFGPRLNVVVGPNGSGKSTLVCAIALVLGASPKVR 237
            SG+ KG+I+SL+MKNFL Y +A A FGPRLN+VVGPNGSGKSTLVCAIAL LG S K R
Sbjct:   30 SGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSLKAR 88          
BLAST of mRNA_H-paniculata_contig2251.5992.1 vs. uniprot
Match: A0A6H5JJB3_9PHAE (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJB3_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.510e-20
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 1
Query:   28 GSEGPTPRASASGFSKGAIMSLRMKNFLSYDEAVATFGPRLNVVVGPNGSGKSTLVCAIALVLGASPKVRKR 243
            GS    P    SG+ KG+I+SL+MKNFL Y +A A FGPRLN+VVGPNGSGKSTLVCAIAL LG SPKV  R
Sbjct:   19 GSSTCAPSREVSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGR 90          
BLAST of mRNA_H-paniculata_contig2251.5992.1 vs. uniprot
Match: D7FUV3_ECTSI (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV3_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 5.100e-20
Identity = 53/80 (66.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    4 SRAQLEGEGSEGPTPRASASGFSKGAIMSLRMKNFLSYDEAVATFGPRLNVVVGPNGSGKSTLVCAIALVLGASPKVRKR 243
            SR +L G G+ G   R   SG+ KG+I+SL+MKNFL Y +A A FGPRLN+VVGPNGSGKSTLVCAIAL LG SPKV  R
Sbjct:   13 SRERLTGSGT-GAIGRE-VSGWKKGSIVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIALGLGGSPKVLGR 90          
BLAST of mRNA_H-paniculata_contig2251.5992.1 vs. uniprot
Match: A0A2S7NSN0_9HELO (Structural maintenance of chromosomes protein 5 n=3 Tax=unclassified Rutstroemia TaxID=2684950 RepID=A0A2S7NSN0_9HELO)

HSP 1 Score: 77.0 bits (188), Expect = 1.360e-14
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   46 PRASASGFSKGAIMSLRMKNFLSYDEAVATFGPRLNVVVGPNGSGKSTLVCAIALVLGASPKVRKRETQ 252
            P   ++GF+ GAI+ +++ NF++YD+A    GP LN+V+GPNG+GKS+LVCA  L LGA PK+  R T+
Sbjct:   81 PNGGSTGFAPGAILRVKLTNFITYDDAEFFPGPNLNMVIGPNGTGKSSLVCAFCLGLGADPKLLGRATK 149          
BLAST of mRNA_H-paniculata_contig2251.5992.1 vs. uniprot
Match: R4XEP5_TAPDE (Structural maintenance of chromosomes protein 5 n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XEP5_TAPDE)

HSP 1 Score: 75.1 bits (183), Expect = 6.450e-14
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   52 ASASGFSKGAIMSLRMKNFLSYDEAVATFGPRLNVVVGPNGSGKSTLVCAIALVLGASPKVRKR 243
            A +S FS GA++S+RM+NF++YD+    FGP LN+++GPNGSGKST+V  I L LG  P++  R
Sbjct:   44 AKSSDFSPGALVSIRMQNFMTYDDISYDFGPALNMIIGPNGSGKSTVVAGICLGLGFDPRIMGR 107          
BLAST of mRNA_H-paniculata_contig2251.5992.1 vs. uniprot
Match: G0S170_CHATD (Structural maintenance of chromosomes protein 5 n=1 Tax=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) TaxID=759272 RepID=G0S170_CHATD)

HSP 1 Score: 74.7 bits (182), Expect = 8.800e-14
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   49 RASASGFSKGAIMSLRMKNFLSYDEAVATFGPRLNVVVGPNGSGKSTLVCAIALVLGASPKVRKRET 249
            R++ S F  GAI+ ++MKNF++Y+EA    GP LN+++GPNG+GKS+LVCAI L LG  P V  R T
Sbjct:   62 RSTNSEFQPGAIVRVKMKNFVTYEEAEFYLGPNLNMIIGPNGTGKSSLVCAICLGLGFPPSVLGRAT 128          
BLAST of mRNA_H-paniculata_contig2251.5992.1 vs. uniprot
Match: Q7SCT0_NEUCR (Structural maintenance of chromosomes protein 5 n=4 Tax=Neurospora TaxID=5140 RepID=Q7SCT0_NEUCR)

HSP 1 Score: 74.7 bits (182), Expect = 8.810e-14
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 KSRAQLEGEGSEGPTPRA-SASGFSKGAIMSLRMKNFLSYDEAVATFGPRLNVVVGPNGSGKSTLVCAIALVLGASPKVRKRET 249
            +SR + +   S  P P A S+SGF  GAI+ +++K+F++Y+EA    GP LN+V+GPNG+GKS+LVCAI L LG    V  R T
Sbjct:   44 RSRRRRDPTASASPQPNAQSSSGFQPGAIVRVKLKDFVTYNEAEFFLGPSLNMVIGPNGTGKSSLVCAICLGLGFPSSVLGRAT 127          
BLAST of mRNA_H-paniculata_contig2251.5992.1 vs. uniprot
Match: A0A8J9SLP1_9CHLO (Structural maintenance of chromosomes protein 5 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SLP1_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 1.200e-13
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   13 QLEGEGSE---GPTP----RASASGFSKGAIMSLRMKNFLSYDEAVATFGPRLNVVVGPNGSGKSTLVCAIALVLGASPKVRKR 243
            ++EGE  +   GP+P    R S   F +G+I+ +R+KNF++YDEAV   GPRLN+++ PNG+GKS+L CA+ L L   P +  R
Sbjct:   10 EIEGEEDQHDAGPSPQSAPRLSLENFERGSIIKIRVKNFMTYDEAVFKPGPRLNLILAPNGTGKSSLTCALCLGLAGHPSILGR 93          
BLAST of mRNA_H-paniculata_contig2251.5992.1 vs. uniprot
Match: A0A6A4VPT2_AMPAM (Structural maintenance of chromosomes protein 5 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VPT2_AMPAM)

HSP 1 Score: 73.9 bits (180), Expect = 1.640e-13
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   67 FSKGAIMSLRMKNFLSYDEAVATFGPRLNVVVGPNGSGKSTLVCAIALVLGASPKVRKRETQ 252
            FS+GA++ ++++NFL+YDE     GPRLN+++GPNGSGKST+V A+ L L  SP++  R  Q
Sbjct:   12 FSRGAVVRIKLRNFLTYDEVTVNPGPRLNLLIGPNGSGKSTVVAALVLGLAGSPQILGRAPQ 73          
BLAST of mRNA_H-paniculata_contig2251.5992.1 vs. uniprot
Match: B2AUJ5_PODAN (Structural maintenance of chromosomes protein 5 n=2 Tax=Podospora TaxID=5144 RepID=B2AUJ5_PODAN)

HSP 1 Score: 73.9 bits (180), Expect = 1.640e-13
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   43 TPRASASGFSKGAIMSLRMKNFLSYDEAVATFGPRLNVVVGPNGSGKSTLVCAIALVLGASPKVRKR 243
            T   SAS F  GAI+ ++++NF++Y EA  + GP LN+V+GPNG+GKS+LVCAI L LG  P V  R
Sbjct:   38 TANESASTFQPGAIVRVKLRNFVTYSEAQFSLGPNLNMVIGPNGTGKSSLVCAICLGLGYPPNVLGR 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2251.5992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWM5_ECTSI9.550e-2174.58Structural maintenance of chromosomes protein 5 n=... [more]
A0A6H5JJB3_9PHAE1.510e-2068.06Structural maintenance of chromosomes protein 5 n=... [more]
D7FUV3_ECTSI5.100e-2066.25Structural maintenance of chromosomes protein 5 n=... [more]
A0A2S7NSN0_9HELO1.360e-1450.72Structural maintenance of chromosomes protein 5 n=... [more]
R4XEP5_TAPDE6.450e-1453.13Structural maintenance of chromosomes protein 5 n=... [more]
G0S170_CHATD8.800e-1453.73Structural maintenance of chromosomes protein 5 n=... [more]
Q7SCT0_NEUCR8.810e-1448.81Structural maintenance of chromosomes protein 5 n=... [more]
A0A8J9SLP1_9CHLO1.200e-1345.24Structural maintenance of chromosomes protein 5 n=... [more]
A0A6A4VPT2_AMPAM1.640e-1351.61Structural maintenance of chromosomes protein 5 n=... [more]
B2AUJ5_PODAN1.640e-1353.73Structural maintenance of chromosomes protein 5 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2251contigH-paniculata_contig2251:20869..21120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue4.7e-17
Seed eggNOG ortholog2880.D7FUV3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsCOG1196@1,KOG0979@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.304419-CDS-H-paniculata_contig2251:20868..211201622929625.304419-CDS-H-paniculata_contig2251:20868..21120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2251 20869..21120 +
1691480940.84177-CDS-H-paniculata_contig2251:20868..211201691480940.84177-CDS-H-paniculata_contig2251:20868..21120Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2251 20869..21120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2251.5992.1prot_H-paniculata_contig2251.5992.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2251 20869..21120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2251.5992.1

>prot_H-paniculata_contig2251.5992.1 ID=prot_H-paniculata_contig2251.5992.1|Name=mRNA_H-paniculata_contig2251.5992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
KSRAQLEGEGSEGPTPRASASGFSKGAIMSLRMKNFLSYDEAVATFGPRL
NVVVGPNGSGKSTLVCAIALVLGASPKVRKRETQ
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mRNA from alignment at H-paniculata_contig2251:20869..21120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2251.5992.1 ID=mRNA_H-paniculata_contig2251.5992.1|Name=mRNA_H-paniculata_contig2251.5992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig2251:20869..21120+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGCAGGGCACAACTCGAGGGGGAAGGTTCAGAGGGACCCACGCCGAG AGCCTCCGCGTCGGGTTTCTCCAAAGGTGCTATTATGAGCCTTCGCATGA AGAACTTCCTGTCCTACGACGAAGCCGTTGCGACTTTCGGACCGCGGTTG AATGTGGTGGTCGGGCCTAATGGGTCGGGAAAGTCCACCTTGGTGTGTGC TATAGCATTGGTACTTGGCGCCTCTCCAAAGGTGAGGAAGCGTGAGACGC AG
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Coding sequence (CDS) from alignment at H-paniculata_contig2251:20869..21120+

>mRNA_H-paniculata_contig2251.5992.1 ID=mRNA_H-paniculata_contig2251.5992.1|Name=mRNA_H-paniculata_contig2251.5992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig2251:20869..21120+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGCAGGGCACAACTCGAGGGGGAAGGTTCAGAGGGACCCACGCCGAG
AGCCTCCGCGTCGGGTTTCTCCAAAGGTGCTATTATGAGCCTTCGCATGA
AGAACTTCCTGTCCTACGACGAAGCCGTTGCGACTTTCGGACCGCGGTTG
AATGTGGTGGTCGGGCCTAATGGGTCGGGAAAGTCCACCTTGGTGTGTGC
TATAGCATTGGTACTTGGCGCCTCTCCAAAGGTGAGGAAGCGTGAGACGC
AGAAGAGCAGGGCACAACTCGAGGGGGAAGGTTCAGAGGGACCCACGCCG
AGAGCCTCCGCGTCGGGTTTCTCCAAAGGTGCTATTATGAGCCTTCGCAT
GAAGAACTTCCTGTCCTACGACGAAGCCGTTGCGACTTTCGGACCGCGGT
TGAATGTGGTGGTCGGGCCTAATGGGTCGGGAAAGTCCACCTTGGTGTGT
GCTATAGCATTGGTACTTGGCGCCTCTCCAAAGGTGAGGAAGCGTGAGAC
GCAG
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