mRNA_H-paniculata_contig22476.5983.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22476.5983.1
Unique NamemRNA_H-paniculata_contig22476.5983.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22476.5983.1 vs. uniprot
Match: A0A1Q3BQ79_CEPFO (Uncharacterized protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BQ79_CEPFO)

HSP 1 Score: 97.4 bits (241), Expect = 5.980e-22
Identity = 57/169 (33.73%), Postives = 90/169 (53.25%), Query Frame = 1
Query:    1 KDGTRRILNMNETYEGHGARTAIMIYNATGSLIKLRFNHDIHGFV-KGSFPDTIENGKWGLVLHVKTPYALY-GSEGFVVYTAENRAGEKCNVNMCFKTPDWGEMSVYVETREYGHWDNNRYDGYMGKLLNENGPTSQDLTQRGVAVVGLISDGSQPLCQFFVGLQNAI 501
            K+  R + ++ E Y G+G  T  M+YNATG  I    +HD  G + K  +P  IENG+WG+ LHVK   A++ GS   VVY  +N++G+ C+    +  P  G   V+   RE  H+ NN+Y   + K +   GPT +D   +G + +  I   + PL +  +  + A+
Sbjct:   46 KEAERYVESLKEEY-GYGVSTLCMVYNATGDAIHYIDDHDYVGNIGKSPYPQIIENGQWGVFLHVKPTAAVFLGSSASVVYRGKNQSGKDCDWMFAWYNPLIGSNHVFTRIREANHFANNKYWDDISKWVAWAGPTDKD-NWKGCSSMVSIGGSASPLFEAILTQETAV 212          
BLAST of mRNA_H-paniculata_contig22476.5983.1 vs. uniprot
Match: A0A1Q3BQ97_CEPFO (Uncharacterized protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BQ97_CEPFO)

HSP 1 Score: 93.2 bits (230), Expect = 3.260e-20
Identity = 57/169 (33.73%), Postives = 85/169 (50.30%), Query Frame = 1
Query:    1 KDGTRRILNMNETYEGHGARTAIMIYNATGSLIKLRFNHDIHGFV-KGSFPDTIENGKWGLVLHVKTPYALY-GSEGFVVYTAENRAGEKCNVNMCFKTPDWGEMSVYVETREYGHWDNNRYDGYMGKLLNENGPTSQDLTQRGVAVVGLISDGSQPLCQFFVGLQNAI 501
            K+  R + ++ E Y G G  T  M+YNATG  I    +HD  G   K S+P  IENG+WG+ LHV+   A + GS   VVY  +N AG  C+    + TP  G    +   RE  H+ +N+Y   + K +   GPT +D    G + +  I   + PL +  +  + A+
Sbjct:   58 KEAERYVESLKEQY-GFGVSTLCMVYNATGDAIHHIDDHDYVGHTWKSSYPPIIENGQWGVFLHVRPAAAFFSGSYAAVVYRGKNEAGNDCDWMFAWGTPFIGSNHAFTRIREANHFASNKYWDDISKWVAWAGPTDKD-NWNGCSSMVSIGGAASPLLEAILTQETAV 224          
BLAST of mRNA_H-paniculata_contig22476.5983.1 vs. uniprot
Match: A0A067LWQ3_9AGAM (Uncharacterized protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067LWQ3_9AGAM)

HSP 1 Score: 67.8 bits (164), Expect = 8.910e-11
Identity = 46/156 (29.49%), Postives = 75/156 (48.08%), Query Frame = 1
Query:    4 DGTRRILNMNETYEGHGARTAIMIYNATGSLIKLRFNHDIHGFVKGSFPDT-IENGKWGLVLHVKTPYALYGSEGFVVYTAENRAGEKCNVNMCFKTPDWGEM---SVYVETREYGHWDNNRYDGYMGKLLNENGPTSQDLTQRGVAVVGLISDGS 459
            +   R+  + E Y G+G  T + +YNA+G  I L+  H   G   G  P++ IENG+WG+ LHVK   A  GS G V+Y    R     ++ + ++ P W  M   + + E    G W +     +M  +L++   ++   +  G  V G I D +
Sbjct:   45 EAIERLKKLKENY-GNGVSTLVHVYNASGDRITLQGEHSWRGSFYGGPPESFIENGQWGVFLHVKPTGAAVGSAGAVIY----RTAGSADIFVGWQNP-WNTMYQPTCHGEASSRGWWWDKTTKDHMLSVLDDEATSTFLRSGSGYTVSGKIGDST 194          
BLAST of mRNA_H-paniculata_contig22476.5983.1 vs. uniprot
Match: UPI0020243298 (23 kDa jasmonate-induced protein-like n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI0020243298)

HSP 1 Score: 67.4 bits (163), Expect = 1.380e-10
Identity = 45/153 (29.41%), Postives = 69/153 (45.10%), Query Frame = 1
Query:   46 GHGARTAIMIYNATGSLIKLRFNHDIHGFVKGS-FPDTIENGKWGLVLHVKTPYALYGSEGFVVYTAENRAGEKCNVNMCFKT-PDWGEMSVYVETREYGHWDNNRYDGYMGKLLNENGPTSQDLTQRGVAVVGLISDGSQPLCQFFVGLQNA 498
            G    T  +IYNATG  ++   + D  G +  + +P  IENG+WG+ LH++ P +  G  G VVY   N   E C+  + ++   D  +   Y E RE  H+ N  +D     LL  +     D    G      I +    +C+  + L NA
Sbjct:   58 GVDVATLCLIYNATGGTVEYSGHKDWEGHLGAAPYPIMIENGQWGVFLHLQNPGSDAGCVGAVVYRGTNAENEDCDWMLAWRLRKDTNDNRAYTEVREIDHF-NGMWDEIHNSLLKSDSLDKSD--SHGCLSFVTIGNHKYSICRAILTLGNA 207          
BLAST of mRNA_H-paniculata_contig22476.5983.1 vs. uniprot
Match: A0A8K0H7I8_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0H7I8_9ROSA)

HSP 1 Score: 65.5 bits (158), Expect = 6.970e-10
Identity = 47/151 (31.13%), Postives = 77/151 (50.99%), Query Frame = 1
Query:   46 GHGARTAIMIYNATGSLIKLRFNHDIHG--FVKGSFPDTIENGKWGLVLHVKTPYALYGSEGFVVYTAENRAGEKCNVNMCFKTP-DWGEMSVYVETREYGHWDNNRYDGYMGKLLNENGPTSQDLTQRGVAVVGLISDGSQPLCQFFVGL 489
            G G+ T  +IYNATG+ I     H+  G  + + S+P  +ENG+WG+ LHV++  +  GS G VVY  +++ G   +  + +  P      +VY E RE  H++ N Y  Y+G  L ++   + +       +V +  DG      FF G+
Sbjct:   58 GDGSCTLGLIYNATGNTITHVGGHNWEGNIYEQTSYPAQLENGQWGVFLHVRSS-SRSGSVGAVVYRGKDKTGTDYDRMLAWYNPLSQTPNAVYTEIREPRHYERN-YWSYIGGELKDSAWNNSETGNGCHTIVKIDRDGE---AAFFEGI 203          
BLAST of mRNA_H-paniculata_contig22476.5983.1 vs. uniprot
Match: A0A067M7H3_9AGAM (Uncharacterized protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067M7H3_9AGAM)

HSP 1 Score: 65.1 bits (157), Expect = 1.190e-9
Identity = 47/149 (31.54%), Postives = 65/149 (43.62%), Query Frame = 1
Query:    4 DGTRRILNMNETYEGHGARTAIMIYNATGSLIKLRFNHDIHGFVKGSFPDT-IENGKWGLVLHVKTPYALYGSEGFVVYTAENRAGEKCNVNMCFKTPDWGEMSVYVETREYGHWDNNRYDGYMGKLLNENGPTSQDLTQRGVAVVGLI 447
            D   R+  + E Y G+G  T + +YNA+G  I L+  H   G   G  P++ IENG+WG+ LHVK   A  GS G VVY                     G   ++        WD    D  +  L ++ GPT +D +  G  V G I
Sbjct:   90 DAIERLKKLKEDY-GNGVSTLVRVYNASGDRITLQDEHSWRGSFYGGPPESFIENGQWGVFLHVKPTGAAVGSAGAVVYRTA------------------GSADIF--------WDTGSKDAMLALLDDKAGPTFRD-SNAGYKVYGNI 210          
BLAST of mRNA_H-paniculata_contig22476.5983.1 vs. uniprot
Match: A0A6J1HUH1_CUCMA (23 kDa jasmonate-induced protein-like n=2 Tax=Cucurbita TaxID=3660 RepID=A0A6J1HUH1_CUCMA)

HSP 1 Score: 63.5 bits (153), Expect = 3.850e-9
Identity = 51/159 (32.08%), Postives = 71/159 (44.65%), Query Frame = 1
Query:   46 GHGARTAIMIYNATGSLIKLRFNHDIHGFVKGS-FPDTIENGKWGLVLHVKTPYALYGSEGFVVYTAENRAGEKCNVNMCFKTPDWGEMSV-----YVETRE---YGHWDNNRYDGYMGKLLNENGPTSQDLTQRGVAVVGLISDGSQPLCQFFVGLQN 495
            G    T  +IYNATG+ IKL   HD HG +  S FP  IENG+WG+ LHV T     GSE  VVY  EN  G   +  + +  P   +++       ++ R      H   N     + KLL E+      +        G I +GS  +C+    + N
Sbjct:   60 GTEVSTMGLIYNATGNAIKLVKTHDWHGCIGASPFPIRIENGQWGVFLHVDTDST--GSEAAVVYRGENLRGVPTDWLLSWSNPPSYQLTTNKVFTMLDVRNPFCANHSSGNDLWKSLSKLLLESS-LCHSVNHAESQSAGSIGNGSTVICEAIFTIIN 215          
BLAST of mRNA_H-paniculata_contig22476.5983.1 vs. uniprot
Match: UPI000C9D8DA7 (23 kDa jasmonate-induced protein-like n=1 Tax=Cucurbita pepo subsp. pepo TaxID=3664 RepID=UPI000C9D8DA7)

HSP 1 Score: 58.2 bits (139), Expect = 1.440e-7
Identity = 35/72 (48.61%), Postives = 41/72 (56.94%), Query Frame = 1
Query:   46 GHGARTAIMIYNATGSLIKLRFNHDIHGFVKGS-FPDTIENGKWGLVLHVKTPYALYGSEGFVVYTAENRAG 258
            G    T  +IYNATG+ IKL   HD HG +  S F   IENG+WG+ LHV T     GSE  VVY  +N  G
Sbjct:   50 GTEVSTMGLIYNATGNAIKLLKTHDWHGCIGASPFLIRIENGQWGVFLHVDTDST--GSEAAVVYRGQNLRG 119          
BLAST of mRNA_H-paniculata_contig22476.5983.1 vs. uniprot
Match: UPI001E88E9EB (Uncharacterized protein n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI001E88E9EB)

HSP 1 Score: 54.3 bits (129), Expect = 1.130e-5
Identity = 28/76 (36.84%), Postives = 41/76 (53.95%), Query Frame = 1
Query:   46 GHGARTAIMIYNATGSLIKLRFNHDIHGFVKGS-FPDTIENGKWGLVLHVKTPYALYGSEGFVVYTAENRAGEKCN 270
            G    T  +IYNATG  ++   + D  G +  + +P  IENG+WG+ LH++ P +  G  G VVY   N   E C+
Sbjct:   58 GVDVATLCLIYNATGGTVEYSGHKDWEGHLGAAPYPIMIENGQWGVFLHLQNPGSDAGCVGAVVYRGTNAENEDCD 133          
BLAST of mRNA_H-paniculata_contig22476.5983.1 vs. uniprot
Match: A0A6P5Z9A0_DURZI (23 kDa jasmonate-induced protein-like isoform X1 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5Z9A0_DURZI)

HSP 1 Score: 52.0 bits (123), Expect = 5.780e-5
Identity = 34/97 (35.05%), Postives = 47/97 (48.45%), Query Frame = 1
Query:   61 TAIMIYNATGSLIKLRFNHDIHGFVKGS-FPDTIENGKWGLVLHV-KTPYALYGSEGFVVYTAENRAGEKCNVNMCFKTPDWGEMSVYVETREYGHW 345
            T  +IYNATG  + L    D  G +  + +P  IENG++G+ LHV     +   S G VVY  +  AGE C+    +      +   Y E RE  HW
Sbjct:   64 TVCLIYNATGDTLTLVTYRDWSGHIGFTPYPPKIENGQFGVFLHVGDVDTSDASSVGAVVYRGKKMAGEDCDWMQAWTNKKSNQ--AYSEIREVDHW 158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22476.5983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1Q3BQ79_CEPFO5.980e-2233.73Uncharacterized protein n=1 Tax=Cephalotus follicu... [more]
A0A1Q3BQ97_CEPFO3.260e-2033.73Uncharacterized protein n=1 Tax=Cephalotus follicu... [more]
A0A067LWQ3_9AGAM8.910e-1129.49Uncharacterized protein n=1 Tax=Botryobasidium bot... [more]
UPI00202432981.380e-1029.4123 kDa jasmonate-induced protein-like n=1 Tax=Zizi... [more]
A0A8K0H7I8_9ROSA6.970e-1031.13Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A067M7H3_9AGAM1.190e-931.54Uncharacterized protein n=1 Tax=Botryobasidium bot... [more]
A0A6J1HUH1_CUCMA3.850e-932.0823 kDa jasmonate-induced protein-like n=2 Tax=Cucu... [more]
UPI000C9D8DA71.440e-748.6123 kDa jasmonate-induced protein-like n=1 Tax=Cucu... [more]
UPI001E88E9EB1.130e-536.84Uncharacterized protein n=1 Tax=Ziziphus jujuba va... [more]
A0A6P5Z9A0_DURZI5.780e-535.0523 kDa jasmonate-induced protein-like isoform X1 n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22476contigH-paniculata_contig22476:2798..3761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.4
Seed ortholog evalue1.8e-15
Seed eggNOG ortholog3656.XP_008443732.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.23 kDa jasmonate-induced protein-like
EggNOG OGs2CCKJ@1,2S22X@2759,37VSV@33090,3GJKR@35493,4JRNZ@91835
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons2
Model size522
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22476.5983.1prot_H-paniculata_contig22476.5983.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22476 2825..3761 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.3930988-UTR-H-paniculata_contig22476:2797..28241622929624.3930988-UTR-H-paniculata_contig22476:2797..2824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22476 2798..2824 +
1691480940.4241753-UTR-H-paniculata_contig22476:2797..28241691480940.4241753-UTR-H-paniculata_contig22476:2797..2824Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22476 2798..2824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.4084556-CDS-H-paniculata_contig22476:2824..31051622929624.4084556-CDS-H-paniculata_contig22476:2824..3105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22476 2825..3105 +
1691480940.433764-CDS-H-paniculata_contig22476:2824..31051691480940.433764-CDS-H-paniculata_contig22476:2824..3105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22476 2825..3105 +
1622929624.4253054-CDS-H-paniculata_contig22476:3547..37611622929624.4253054-CDS-H-paniculata_contig22476:3547..3761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22476 3548..3761 +
1691480940.4417157-CDS-H-paniculata_contig22476:3547..37611691480940.4417157-CDS-H-paniculata_contig22476:3547..3761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22476 3548..3761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22476.5983.1

>prot_H-paniculata_contig22476.5983.1 ID=prot_H-paniculata_contig22476.5983.1|Name=mRNA_H-paniculata_contig22476.5983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
MNETYEGHGARTAIMIYNATGSLIKLRFNHDIHGFVKGSFPDTIENGKWG
LVLHVKTPYALYGSEGFVVYTAENRAGEKCNVNMCFKTPDWGEMSVYVET
REYGHWDNNRYDGYMGKLLNENGPTSQDLTQRGVAVVGLISDGSQPLCQF
FVGLQNAIIPAPWA*
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mRNA from alignment at H-paniculata_contig22476:2798..3761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22476.5983.1 ID=mRNA_H-paniculata_contig22476.5983.1|Name=mRNA_H-paniculata_contig22476.5983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=964bp|location=Sequence derived from alignment at H-paniculata_contig22476:2798..3761+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGATGGAACTCGACGAATCCTAAATATGAACGAGACATACGAAGGCCA CGGCGCTCGCACGGCCATCATGATCTACAACGCCACTGGCTCACTCATAA AACTCCGATTCAACCACGACATCCACGGGTTCGTCAAAGGTTCGTTCCCT GATACTATCGAAAATGGGAAATGGGGATTGGTGCTGCACGTAAAGACGCC GTATGCACTGTACGGATCCGAAGGCTTCGTGGTTTACACAGCAGAAAACA GAGCCGGGGAGAAGTGCAATGTGAACATGTGCTTCAAGACGCCAGATTGG GGAGAAATGTGAGCAATTGTGTGCGTATTACTCCGTAGGGGGGTGGGGCG CTGGTAGGCTTTTTGATAAAGTATGCGTGCCGCAAGTTCGTCGGCACCAC GCCAGAATTTTCGAGCTCGAAGGGGCACGCGTGCGTGCCGTAGTAGAGAC ACACTCTCGTGTCGCGCGCGCACGCCCCTAAATCGTTCCGAAGCGAAAGA ACGATAGACATGAATAGGTACACTTGACGAGTTCCAACTAATCAAGGACA TTGTCGTGGAATCACGCCAACGTTGGTTCCAAGCGACAAGAATTTCCCTA CATCAGAGTATTTTTTACTGAGCAGATGCAAACGGCCTCTTTCAGTAATC TGAAGTATTCGTGGCCTACAGACTTTTTATGTCTTTGACTCCCGCCTAGA TCCAAGCGCCAAAATCAACCCTAACTATCACTGCATCTTTGTTAATCCAG GTCTGTTTACGTCGAGACAAGGGAATACGGTCACTGGGACAACAACCGAT ACGATGGCTATATGGGTAAACTCCTCAATGAGAATGGACCGACAAGTCAA GACCTAACTCAACGGGGGGTTGCCGTCGTAGGACTCATCTCGGACGGTTC ACAACCACTGTGTCAGTTTTTCGTAGGGCTTCAGAATGCGATCATCCCTG CTCCTTGGGCGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig22476:2798..3761+

>mRNA_H-paniculata_contig22476.5983.1 ID=mRNA_H-paniculata_contig22476.5983.1|Name=mRNA_H-paniculata_contig22476.5983.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig22476:2798..3761+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGAGACATACGAAGGCCACGGCGCTCGCACGGCCATCATGATCTA
CAACGCCACTGGCTCACTCATAAAACTCCGATTCAACCACGACATCCACG
GGTTCGTCAAAGGTTCGTTCCCTGATACTATCGAAAATGGGAAATGGGGA
TTGGTGCTGCACGTAAAGACGCCGTATGCACTGTACGGATCCGAAGGCTT
CGTGGTTTACACAGCAGAAAACAGAGCCGGGGAGAAGTGCAATGTGAACA
TGTGCTTCAAGACGCCAGATTGGGGAGAAATATGAACGAGACATACGAAG
GCCACGGCGCTCGCACGGCCATCATGATCTACAACGCCACTGGCTCACTC
ATAAAACTCCGATTCAACCACGACATCCACGGGTTCGTCAAAGGTTCGTT
CCCTGATACTATCGAAAATGGGAAATGGGGATTGGTGCTGCACGTAAAGA
CGCCGTATGCACTGTACGGATCCGAAGGCTTCGTGGTTTACACAGCAGAA
AACAGAGCCGGGGAGAAGTGCAATGTGAACATGTGCTTCAAGACGCCAGA
TTGGGGAGAAATGTCTGTTTACGTCGAGACAAGGGAATACGGTCACTGGG
ACAACAACCGATACGATGGCTATATGGGTAAACTCCTCAATGAGAATGGA
CCGACAAGTCAAGACCTAACTCAACGGGGGGTTGCCGTCGTAGGACTCAT
CTCGGACGGTTCACAACCACTGTGTCAGTTTTTCGTAGGGCTTCAGAATG
CGATCATCCCTGCTCCTTGGGCGTAAGTCTGTTTACGTCGAGACAAGGGA
ATACGGTCACTGGGACAACAACCGATACGATGGCTATATGGGTAAACTCC
TCAATGAGAATGGACCGACAAGTCAAGACCTAACTCAACGGGGGGTTGCC
GTCGTAGGACTCATCTCGGACGGTTCACAACCACTGTGTCAGTTTTTCGT
AGGGCTTCAGAATGCGATCATCCCTGCTCCTTGGGCGTAA
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