mRNA_H-paniculata_contig22470.5980.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22470.5980.1
Unique NamemRNA_H-paniculata_contig22470.5980.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22470.5980.1 vs. uniprot
Match: A0A6H5KTP6_9PHAE (Ig-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP6_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.030e-32
Identity = 105/290 (36.21%), Postives = 140/290 (48.28%), Query Frame = 2 
Query:  479 ASRR--VHFADELGGSLVSDVRITISWWDHMVFGPRVALGDEGKEFTCMACGHSHSPRKWGGEGAELEKQKHSCRCDNCGSAVVISFAEPAVAVASSRAGSSELLQFIVELNRGVEAVLLFPGVVG--KKRRPVVLYTEDHGESLCWIETGTSAGASNQKPYKLPCSCLLEVVDKSGVSMAAAASHRNGSRQSVVDTYSNCNRWSAELDGPFMTD-GDSGGAASSFASSRWVEGAWEKDGVGRVCVKLKWRPKPTFPVRKATLVEVKTRCSPSVFTRGMLQLRLHNLELD 1333
            +SRR  V ++DE GG LV+ VR T  +W+ MV      LGD G    C  C              E         CD CG         P      S +   EL +FI EL+RGVEA L+FPG+ G  KKRRPV+LYTED+GES+CWI+TG +      +PY++    LLEV DKSG           GSR    ++ + C   +  ++G F ++ G+    A                    V + LKW P+PT+  R   LV+V+T C P +FTRGM QL   N +L 
Sbjct:   93 SSRRGTVRWSDECGGELVTQVRTTTDFWEMMV------LGDGG----CCTCXXXXXXXXXXXXXTETV-------CDGCGELR----RRPGGDACCSSSPPGELFRFIAELSRGVEATLVFPGLGGISKKRRPVILYTEDNGESICWIKTGANGSG---EPYRIRSKTLLEVKDKSGA----------GSR---AESVARCGGGAHGVEGAFRSECGEQEEDARGXXXXXXXXXXXXXXXATGVRINLKWLPQPTWSKRTVKLVDVQTAC-PGIFTRGMQQLLSFNSDLQ 344
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BLAST of mRNA_H-paniculata_contig22470.5980.1 vs. uniprot
Match: D8LE00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE00_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 2.210e-26
Identity = 73/184 (39.67%), Postives = 102/184 (55.43%), Query Frame = 2 
Query:  800 ELNRGVEAVLLFPGVVG--KKRRPVVLYTEDHGESLCWIETGTSAGASNQKPYKLPCSCLLEVVDKSGVSMAAAA----SHRNGSRQSVVDTYSNCNRWSAELDGPFMTDGDSGGAASSFASSRWVEGAWEKDGVGRVCVKLKWRPKPTFPVRKATLVEVKTRCSPSVFTRGMLQLRLHNLELD 1333
            +L+RGVEA L+FPG  G  KKRRPV+LYTED+GES+CWI+TG +      +PY++ C  LLEV DKSG   +A +    +   G    V   + +   W  + +      G  GG +S + ++    G         V + LKW P+PT+  R   LV+V+T C P +FTRGM QL   N +L 
Sbjct:   14 QLSRGVEATLVFPGFGGISKKRRPVILYTEDNGESICWIKTGANGSG---EPYRIRCKTLLEVRDKSGAGSSAESPATVAGSGGELHEVEGAFGS--EWGEQKEDA----GGVGGTSSGYGTAAAAAG---------VRINLKWLPQPTWSRRTVKLVDVQTAC-PGMFTRGMQQLLSFNTDLQ 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22470.5980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTP6_9PHAE1.030e-3236.21Ig-like domain-containing protein n=1 Tax=Ectocarp... [more]
D8LE00_ECTSI2.210e-2639.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22470contigH-paniculata_contig22470:842..3534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2693
Cds size1086
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22470.5980.1prot_H-paniculata_contig22470.5980.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22470 1098..2183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.1323767-UTR-H-paniculata_contig22470:841..10971622929624.1323767-UTR-H-paniculata_contig22470:841..1097Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22470 842..1097 +
1691480940.3156068-UTR-H-paniculata_contig22470:841..10971691480940.3156068-UTR-H-paniculata_contig22470:841..1097Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22470 842..1097 +
1622929624.170843-UTR-H-paniculata_contig22470:2183..35341622929624.170843-UTR-H-paniculata_contig22470:2183..3534Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22470 2184..3534 +
1691480940.3442092-UTR-H-paniculata_contig22470:2183..35341691480940.3442092-UTR-H-paniculata_contig22470:2183..3534Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22470 2184..3534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.1515439-CDS-H-paniculata_contig22470:1097..21831622929624.1515439-CDS-H-paniculata_contig22470:1097..2183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22470 1098..2183 +
1691480940.3258522-CDS-H-paniculata_contig22470:1097..21831691480940.3258522-CDS-H-paniculata_contig22470:1097..2183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22470 1098..2183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22470.5980.1

>prot_H-paniculata_contig22470.5980.1 ID=prot_H-paniculata_contig22470.5980.1|Name=mRNA_H-paniculata_contig22470.5980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=362bp
MFPTMKPSMASIQMGEGLSILEVVQRGFTNKGDSMISAGSYSSWGDADLS
EGTSSCTSAEEDSTRVGQDSTDDMASRRVHFADELGGSLVSDVRITISWW
DHMVFGPRVALGDEGKEFTCMACGHSHSPRKWGGEGAELEKQKHSCRCDN
CGSAVVISFAEPAVAVASSRAGSSELLQFIVELNRGVEAVLLFPGVVGKK
RRPVVLYTEDHGESLCWIETGTSAGASNQKPYKLPCSCLLEVVDKSGVSM
AAAASHRNGSRQSVVDTYSNCNRWSAELDGPFMTDGDSGGAASSFASSRW
VEGAWEKDGVGRVCVKLKWRPKPTFPVRKATLVEVKTRCSPSVFTRGMLQ
LRLHNLELDRA*
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mRNA from alignment at H-paniculata_contig22470:842..3534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22470.5980.1 ID=mRNA_H-paniculata_contig22470.5980.1|Name=mRNA_H-paniculata_contig22470.5980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2693bp|location=Sequence derived from alignment at H-paniculata_contig22470:842..3534+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACACAGCAAGTTGTATCAACTTCAATTACAGACAAAATGCATGCATGAC
CAATGGGTACACAAATCGAAAAATACCCTAGTATTGTAACTAAAATGACC
AAGGACAACGTCAACAGATTCATTTCGGGGGGTTTTGAATCTTTCACCGT
AAGCGAATCCGCAGTCTGAAGGTGGCTGTCAGAGGTTAGATGCTGACGCT
GGCTCTACAGACGATAAACTAGATCTGAGGGAAGCGAGCTTCAGGGGTAA
TCGGGAATGTTCCCCACGATGAAACCATCCATGGCCAGCATTCAAATGGG
AGAGGGGTTGTCAATACTAGAGGTGGTGCAGAGAGGGTTCACGAACAAGG
GAGACAGCATGATCTCAGCTGGCTCTTATTCCTCCTGGGGAGACGCGGAC
CTGAGTGAAGGCACTTCTTCCTGTACGAGTGCGGAGGAGGACTCAACGCG
GGTAGGTCAGGACAGCACCGATGACATGGCCTCACGCAGGGTGCACTTTG
CGGACGAGTTGGGCGGGAGTCTGGTGAGTGATGTGAGAATAACGATCAGC
TGGTGGGATCATATGGTATTCGGTCCTAGAGTCGCCTTGGGCGACGAAGG
CAAGGAGTTTACGTGTATGGCTTGTGGCCACTCCCACTCCCCGCGCAAGT
GGGGGGGGGAGGGAGCGGAGCTAGAGAAGCAGAAGCATAGTTGTAGATGC
GACAACTGTGGGTCTGCCGTGGTCATCAGCTTTGCTGAGCCCGCCGTCGC
GGTGGCCTCCTCCAGGGCGGGCTCCAGCGAATTGCTTCAGTTTATTGTGG
AGCTCAACCGTGGGGTGGAGGCGGTGCTTCTATTTCCTGGGGTCGTCGGC
AAGAAGAGAAGACCGGTGGTGCTCTATACAGAGGACCACGGGGAGTCTCT
GTGTTGGATAGAAACAGGGACTTCTGCCGGTGCTTCGAACCAAAAGCCGT
ACAAGCTGCCGTGCAGCTGCTTGCTGGAGGTTGTGGACAAGAGCGGCGTG
TCTATGGCTGCTGCGGCGTCGCATCGAAATGGGAGCAGGCAGAGCGTAGT
GGACACGTACTCGAATTGCAACAGATGGTCCGCTGAACTGGACGGACCAT
TTATGACAGATGGCGATTCTGGTGGGGCTGCGTCGTCTTTCGCTTCGTCC
CGTTGGGTGGAGGGGGCTTGGGAGAAGGATGGGGTGGGAAGAGTATGCGT
GAAGCTAAAGTGGCGGCCAAAGCCAACGTTTCCTGTAAGGAAAGCGACAC
TAGTAGAGGTGAAGACTCGCTGTAGCCCGTCTGTGTTCACGAGAGGTATG
TTGCAGCTACGATTGCACAACTTAGAGCTCGACCGCGCGTGACGTCATGT
TGGATGTATTATTTTTCATACTCGGTTGCTGGCTCTATTGCCTGTCTTAT
TTTCACACAGCAATATTATAGCCGTACATACGGGTATTTTTTTTCGTCGT
GCACAGGATGTATGTGTGTCTATGTCTGTGTCTGTCTGTGTTTGTGTTGT
GTTTGTGTTTGTGTCTGTGTCTGCTGTGTCTGTGTGTGTTGCCGTCTTGA
AAGAACTGAATCTTGGACTCACAACAGGTCGCTCAAGTATGGTACGATAG
CCGTCTGTGCAACTGTTACTCATCGTCTTGCCAGTAGAGATTCACTAAAT
ACTGTTCTACTGTTGTAGCAACTTGGTCGTCGATTGGTCGTGTAAGCTGC
CGTTACGTATCACTCTGCCCTTCAGTTGGTGTTCGGATTTGTTTGCCGGG
ACGGGGGGCACTAGTCGTAATGATTCTAAATAGGGAGAATGCATATTTTT
AAGCCTATTGTGCCCCTTGTCATCGCTGTCGTCAACCGTCAACCTGAAGA
CGAAGAAAACTTATTTCCGTCGTTGTAGTAACACTTTTTGTCCTTCATCG
CGAGACGGTAGCAAGAAATGTCACGATGGGCGTCGAGACACCCTACTCTC
TGTCCTGTCTGTTTTACGTCTGTAGATGTTCTCTTTATTTAGAAGCAGTT
TAGTTACACCCTCTCGGGAAGGAGAGACGGTGGCGGAGGATTAAGGTCAA
TTGAGATTATGATATGCGTTTGTTGCGTTTTCGCCTCGGGAGTCAGCCAT
CCTCCGAGTATTGTACTTACGTCAACTTCCTGTCGCCCCCCAAAAAAAAA
AAAGAGAGGAAGAATGTATGTAAATGTTGTGCGTACATTCCTTGTGTATA
CATTTATCCCCCTGTTCCGTCTGTATCTTCGCCTTGTTCAAGTCAACGTA
CGACATGTTTTTTGGGGGAGGGGGGTGTCTAAGTGGGGAACGGGAAGGCA
TTGAGCTTCTACGTTTGTGGCATTTTTGGAAAGTTTTTGTGCATGTGGTT
GTGGGTGCTTACATTGTGTTGTTGAGGCTTTGGTTTTTGCCTTGTACGAC
GAAAGCACCTATCAGGTCAGAAAAGGTGATACCGTACCGTTTGTTTGTAT
CCACGCGGTTGTCACGCTGATTCTCACTTCTCACGCGATGCATTACACGT
CGCGATCTCTTGCTGGTTGATCCAACGCATGCCCATTCTCTCTTCGAGTT
GCTCACTCTTGTGACGATTGATGGGTTGGATCCAGTTTTTATGTCGCCTT
GGTTTTGTTGGCACAAAAGATGGAAAACAAAATAATGGAAGCCTACAATG
TTTTGCTCGGCATCCGGCATCTGGGCGAATTCAAACGTTCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig22470:842..3534+

>mRNA_H-paniculata_contig22470.5980.1 ID=mRNA_H-paniculata_contig22470.5980.1|Name=mRNA_H-paniculata_contig22470.5980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2172bp|location=Sequence derived from alignment at H-paniculata_contig22470:842..3534+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCCCACGATGAAACCATCCATGGCCAGCATTCAAATGGGAGAGGG
GTTGTCAATACTAGAGGTGGTGCAGAGAGGGTTCACGAACAAGGGAGACA
GCATGATCTCAGCTGGCTCTTATTCCTCCTGGGGAGACGCGGACCTGAGT
GAAGGCACTTCTTCCTGTACGAGTGCGGAGGAGGACTCAACGCGGGTAGG
TCAGGACAGCACCGATGACATGGCCTCACGCAGGGTGCACTTTGCGGACG
AGTTGGGCGGGAGTCTGGTGAGTGATGTGAGAATAACGATCAGCTGGTGG
GATCATATGGTATTCGGTCCTAGAGTCGCCTTGGGCGACGAAGGCAAGGA
GTTTACGTGTATGGCTTGTGGCCACTCCCACTCCCCGCGCAAGTGGGGGG
GGGAGGGAGCGGAGCTAGAGAAGCAGAAGCATAGTTGTAGATGCGACAAC
TGTGGGTCTGCCGTGGTCATCAGCTTTGCTGAGCCCGCCGTCGCGGTGGC
CTCCTCCAGGGCGGGCTCCAGCGAATTGCTTCAGTTTATTGTGGAGCTCA
ACCGTGGGGTGGAGGCGGTGCTTCTATTTCCTGGGGTCGTCGGCAAGAAG
AGAAGACCGGTGGTGCTCTATACAGAGGACCACGGGGAGTCTCTGTGTTG
GATAGAAACAGGGACTTCTGCCGGTGCTTCGAACCAAAAGCCGTACAAGC
TGCCGTGCAGCTGCTTGCTGGAGGTTGTGGACAAGAGCGGCGTGTCTATG
GCTGCTGCGGCGTCGCATCGAAATGGGAGCAGGCAGAGCGTAGTGGACAC
GTACTCGAATTGCAACAGATGGTCCGCTGAACTGGACGGACCATTTATGA
CAGATGGCGATTCTGGTGGGGCTGCGTCGTCTTTCGCTTCGTCCCGTTGG
GTGGAGGGGGCTTGGGAGAAGGATGGGGTGGGAAGAGTATGCGTGAAGCT
AAAGTGGCGGCCAAAGCCAACGTTTCCTGTAAGGAAAGCGACACTAGTAG
AGGTGAAGACTCGCTGTAGCCCGTCTGTGTTCACGAGAGGTATGTTGCAG
CTACGATTGCACAACTTAGAGCTCGACCGCGCGTGAATGTTCCCCACGAT
GAAACCATCCATGGCCAGCATTCAAATGGGAGAGGGGTTGTCAATACTAG
AGGTGGTGCAGAGAGGGTTCACGAACAAGGGAGACAGCATGATCTCAGCT
GGCTCTTATTCCTCCTGGGGAGACGCGGACCTGAGTGAAGGCACTTCTTC
CTGTACGAGTGCGGAGGAGGACTCAACGCGGGTAGGTCAGGACAGCACCG
ATGACATGGCCTCACGCAGGGTGCACTTTGCGGACGAGTTGGGCGGGAGT
CTGGTGAGTGATGTGAGAATAACGATCAGCTGGTGGGATCATATGGTATT
CGGTCCTAGAGTCGCCTTGGGCGACGAAGGCAAGGAGTTTACGTGTATGG
CTTGTGGCCACTCCCACTCCCCGCGCAAGTGGGGGGGGGAGGGAGCGGAG
CTAGAGAAGCAGAAGCATAGTTGTAGATGCGACAACTGTGGGTCTGCCGT
GGTCATCAGCTTTGCTGAGCCCGCCGTCGCGGTGGCCTCCTCCAGGGCGG
GCTCCAGCGAATTGCTTCAGTTTATTGTGGAGCTCAACCGTGGGGTGGAG
GCGGTGCTTCTATTTCCTGGGGTCGTCGGCAAGAAGAGAAGACCGGTGGT
GCTCTATACAGAGGACCACGGGGAGTCTCTGTGTTGGATAGAAACAGGGA
CTTCTGCCGGTGCTTCGAACCAAAAGCCGTACAAGCTGCCGTGCAGCTGC
TTGCTGGAGGTTGTGGACAAGAGCGGCGTGTCTATGGCTGCTGCGGCGTC
GCATCGAAATGGGAGCAGGCAGAGCGTAGTGGACACGTACTCGAATTGCA
ACAGATGGTCCGCTGAACTGGACGGACCATTTATGACAGATGGCGATTCT
GGTGGGGCTGCGTCGTCTTTCGCTTCGTCCCGTTGGGTGGAGGGGGCTTG
GGAGAAGGATGGGGTGGGAAGAGTATGCGTGAAGCTAAAGTGGCGGCCAA
AGCCAACGTTTCCTGTAAGGAAAGCGACACTAGTAGAGGTGAAGACTCGC
TGTAGCCCGTCTGTGTTCACGAGAGGTATGTTGCAGCTACGATTGCACAA
CTTAGAGCTCGACCGCGCGTGA
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