prot_H-paniculata_contig22410.5967.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig22410.5967.1
Unique Name	prot_H-paniculata_contig22410.5967.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	160

Homology

[Close]

BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: D8LD63_ECTSI (Rhomboid-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD63_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 6.320e-72
Identity = 110/166 (66.27%), Postives = 132/166 (79.52%), Query Frame = 0

Query:    3 DAEEGGGGE--------GYADD-DGRDRAGDEYGFDMFDPVWGKPDYPPSHQPTARQLCGVMCCPCLMGRDGWRTARNLNVWKRIRRRASVITCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLHGGVLHMIMN 159
            DAEEG GG+        GY DD + ++  G EYGF MFDPVWGKPDYPP H  T  Q CGV+CCPCLMGRDGWR +RN NVW+RIR+RA++IT  VDI  F++S+++NGGFQ MWG+ D+NPLLGPS  TL++LGAKH+ LIQEGQVWRL+TPILLHGGVLH+ MN
Sbjct:   84 DAEEGRGGDRDADNSGGGYDDDWEDQNMDGQEYGFVMFDPVWGKPDYPPGHHTTKCQFCGVLCCPCLMGRDGWRGSRNRNVWRRIRKRAAIITSGVDIVAFVLSIIINGGFQSMWGKVDSNPLLGPSIETLMALGAKHLTLIQEGQVWRLLTPILLHGGVLHIFMN 249

[Close]

BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: C7G025_DICDI (Rhomboid-like protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=C7G025_DICDI)

HSP 1 Score: 69.7 bits (169), Expect = 6.250e-11
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 0

Query:   89 VDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLHGGVLHMIMN 159
            +D+ +F+  ++ NGGF+P W     NP  GP++ TLL +GAK+  LI  G+ WR  TPI LH G+ H +MN
Sbjct:  246 IDLVMFIWEIIYNGGFEP-W---KTNPWFGPNSYTLLDVGAKYSPLILNGEWWRFFTPIFLHVGIFHYLMN 312

[Close]

BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: F4QD49_CAVFA (Rhomboid-like protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QD49_CAVFA)

HSP 1 Score: 69.7 bits (169), Expect = 6.260e-11
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 0

Query:   84 VITCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLHGGVLHMIMN 159
            ++   +D  + +  +++NGGF+P W     NP  GPSA TLL++GAK+  LI  G+ WR  +PI LH G+ H++MN
Sbjct:  239 ILVSIIDTCLLIWEIVLNGGFEP-W---KTNPWFGPSASTLLNVGAKYAPLILYGEWWRFFSPIFLHVGIFHLLMN 310

[Close]

BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: A0A835Z0C4_9STRA (Rhomboid-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0C4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.260e-11
Identity = 52/155 (33.55%), Postives = 72/155 (46.45%), Query Frame = 0

Query:   22 AGDEYGFDMFDPVWGKPDYPPSHQPTARQLCGVMCCPCLMGRD-GWRTARNLN---------------VWKRIRRRASVITCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLI-QEGQVWRLITPILLHGGVLHMIMN 159
            A DE   +M DPVWGK        P   Q+     CPCL+G    W     L                V +R+ +  +V   AV +A+ L ++ V GG          NP+LGP    L+  GAK   LI    Q WRL+TP+LLH G++H+++N
Sbjct:   87 ADDERDPEMEDPVWGKLVVEQVGGPRPHQVLCFAFCPCLVGPTLRWERRTMLGGLSVPVLLCDSGKSAVIRRLMKTWAVGFGAVQVAMLLQALTVGGGGL---APTSVNPMLGPWPSVLVIQGAKVASLIVYRHQYWRLMTPLLLHAGLIHLVVN 238

[Close]

BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: A0A7S3GEP9_9EUKA (Rhomboid-like protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GEP9_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 2.170e-10
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 0

Query:   89 VDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLHGGVLHMIMN 159
            VD  +  IS+++  GF P+      NP+ GPSA  L  +GAK+  LI+EG++WR++TP+ LH GV H  MN
Sbjct:  215 VDTVLLGISLIIQPGFVPL----SENPMAGPSARVLSEMGAKNDSLIEEGELWRIVTPMFLHAGVFHWAMN 281

[Close]

BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: A0A8J4Q3D2_9MYCE (Rhomboid-like protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q3D2_9MYCE)

HSP 1 Score: 66.2 bits (160), Expect = 1.010e-9
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 0

Query:   84 VITCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLHGGVLHMIMN 159
            ++   +++A+ +  ++ N G +P W     NP  GPSA TLL +GAK   LI+EG+ WR  +PI LH G+ H++MN
Sbjct:  247 ILISLINVALLIWEIIYNKGIEP-W---KVNPWFGPSAQTLLDVGAKSSPLIKEGEWWRFFSPIFLHVGIFHLLMN 318

[Close]

BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: A0A7S0ES09_9CRYP (Rhomboid-like protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0ES09_9CRYP)

HSP 1 Score: 65.5 bits (158), Expect = 1.600e-9
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 0

Query:   57 CPCLMGRDGWRTARNLNVWKRIRRRASVITCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLHGGVLHMIMN 159
            CPC +   G+          R +   SVIT A +I VF++++ + G   P       N ++GPS+   L LGAK+   I  GQ WRL+ PI LH GV+H++ N
Sbjct:  109 CPCCINGVGYAVKTFYETALRCKF-TSVITLA-EIVVFVVTISIYGFTSP-----SNNNMIGPSSEAFLELGAKYTPYILNGQAWRLVVPIFLHAGVVHILAN 204

[Close]

BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: A0A7S2KJA0_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJA0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.880e-9
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 0

Query:   86 TCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLI-QEGQVWRLITPILLHGGVLHMIMN 159
            T A    + ++S+L NGG +        NP++GPSA TL+ LGAK   LI  EG+++RL +P++LH GV+H I+N
Sbjct:  203 TLAFCTIMLVVSILENGGIESA----SVNPMIGPSAETLIDLGAKQTALIVDEGEIYRLFSPMVLHAGVIHYIVN 273

[Close]

BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: A0A7S0A294_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A294_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.060e-9
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 0

Query:   96 ISVLVNG-GFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLI-QEGQVWRLITPILLHGGVLHMIMN 159
            +S+  NG   +P+      NP++GPSA TL+ LGAK+  LI  E QVWRL+TP+ LH G++H I N
Sbjct:    1 VSIAFNGWSVEPI----STNPMIGPSAETLIQLGAKYTDLIVNENQVWRLVTPMFLHAGLIHYIFN 62

[Close]

BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: UPI000644C655 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C655)

HSP 1 Score: 64.7 bits (156), Expect = 3.390e-9
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0

Query:   83 SVITCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLHGGVLHMIMN 159
            +++   VD+AV +  +++N GF+P W     NP  GPSA  LL  GAK+   +  G+ WR  +P+ LH GV H++MN
Sbjct:  215 AILISLVDVAVLVWEIILNKGFEP-W---KVNPWFGPSASVLLQAGAKYTPYMLAGEWWRFFSPMFLHVGVFHLLMN 287

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LD63_ECTSI	6.320e-72	66.27	Rhomboid-like protein n=1 Tax=Ectocarpus siliculos...	[more]
C7G025_DICDI	6.250e-11	45.07	Rhomboid-like protein n=1 Tax=Dictyostelium discoi...	[more]
F4QD49_CAVFA	6.260e-11	42.11	Rhomboid-like protein n=1 Tax=Cavenderia fascicula...	[more]
A0A835Z0C4_9STRA	7.260e-11	33.55	Rhomboid-like protein n=1 Tax=Tribonema minus TaxI...	[more]
A0A7S3GEP9_9EUKA	2.170e-10	45.07	Rhomboid-like protein n=1 Tax=Palpitomonas bilix T...	[more]
A0A8J4Q3D2_9MYCE	1.010e-9	40.79	Rhomboid-like protein n=1 Tax=Polysphondylium viol...	[more]
A0A7S0ES09_9CRYP	1.600e-9	36.89	Rhomboid-like protein n=1 Tax=Hanusia phi TaxID=30...	[more]
A0A7S2KJA0_9STRA	1.880e-9	44.00	Rhomboid-like protein (Fragment) n=1 Tax=Leptocyli...	[more]
A0A7S0A294_9STRA	3.060e-9	48.48	Rhomboid-like protein (Fragment) n=1 Tax=Rhizosole...	[more]
UPI000644C655	3.390e-9	40.26	hypothetical protein n=1 Tax=Acytostelium subglobo...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035952	Rhomboid-like superfamily	GENE3D	1.20.1540.10		coord: 75..160 e-value: 1.4E-8 score: 36.4
IPR022764	Peptidase S54, rhomboid domain	PFAM	PF01694	Rhomboid	coord: 135..160 e-value: 6.1E-6 score: 26.3
IPR002610	Peptidase S54, rhomboid	PANTHER	PTHR22936	RHOMBOID-RELATED	coord: 70..160
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 105..115
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 82..104
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 159..160
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 116..133
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 140..158
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 134..139
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..81
None	No IPR available	SUPERFAMILY	144091	Rhomboid-like	coord: 85..160
None	No IPR available	TMHMM	TMhelix		coord: 82..104

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig22410	contig	H-paniculata_contig22410:352..3906 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig22410.5967.1	mRNA_H-paniculata_contig22410.5967.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig22410 352..3906 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig22410.5967.1 ID=prot_H-paniculata_contig22410.5967.1|Name=mRNA_H-paniculata_contig22410.5967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
DADAEEGGGGEGYADDDGRDRAGDEYGFDMFDPVWGKPDYPPSHQPTARQ
LCGVMCCPCLMGRDGWRTARNLNVWKRIRRRASVITCAVDIAVFLISVLV
NGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLH
GGVLHMIMNV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035952	Rhomboid-like_sf
IPR022764	Peptidase_S54_rhomboid_dom
IPR002610	Peptidase_S54_rhomboid