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Homology
BLAST of mRNA_H-paniculata_contig224.5964.1 vs. uniprot
Match: A0A6H5K8M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M6_9PHAE) HSP 1 Score: 219 bits (558), Expect = 1.100e-65 Identity = 133/204 (65.20%), Postives = 161/204 (78.92%), Query Frame = 1
Query: 220 MGKAR--GPKRKEAPARKRLQINNPSSSGLLQKQSRRNKGSGVHCTEGLDGGAAVGKRTLGQMLLVPNKRARGGKRRRQRSNAPVPNQPKSSETATIQAEYASVDARASAKKASEESQRLQAPVKVRLVPATAMLRMPSQGNVSLQALRASSSARMVDALLQSITDDPAPDALPARPVRSAGRKRKGNPYAALQDDPSDEEYDS 825
MGKA G KRKEAPARK+LQ +SGLL K + ++ G H G DG AA+GKRTL Q LL PNKRARGGKRRR+ S P++P SSETA IQAEYA+VDAR AK+ SE+++R++APV++RL P+T LRMPS+G VS+ +LRASSSARMV+ALLQSITD+PAPDA P+RPVRSAGRKRKGNP+AAL+DD SD + DS
Sbjct: 1 MGKANRGGQKRKEAPARKQLQ-GKGGNSGLLHKNNHKH---GAHRAAGFDGAAAMGKRTLAQQLLQPNKRARGGKRRRKSSG--TPSKPGSSETAVIQAEYAAVDAREKAKEDSEKARRVRAPVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALEDDGSDSDSDS 198
BLAST of mRNA_H-paniculata_contig224.5964.1 vs. uniprot
Match: D7G3V9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3V9_ECTSI) HSP 1 Score: 146 bits (369), Expect = 2.370e-38 Identity = 82/112 (73.21%), Postives = 99/112 (88.39%), Query Frame = 1
Query: 475 QPKSSETATIQAEYASVDARASAKKASEESQRLQAPVKVRLVPATAMLRMPSQGNVSLQALRASSSARMVDALLQSITDDPAPDALPARPVRSAGRKRKGNPYAALQDDPSD 810
+P SSETA IQAEYA+VDAR AK+ SE+++RL+APV++RL P+T LRMPS+G VS+ +LRASSSARMV+ALLQSITD+PAPDA P+RPVRSAGRKRKGNP+AAL DD SD
Sbjct: 19 EPGSSETAVIQAEYAAVDAREKAKEDSEKARRLRAPVRIRLAPSTTELRMPSEGEVSMASLRASSSARMVEALLQSITDEPAPDAPPSRPVRSAGRKRKGNPFAALGDDGSD 130
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_005880.1 |
| Exons | 6 |
| Model size | 1024 |
| Cds size | 804 |
| Stop | 0 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig224.5964.1 >prot_H-paniculata_contig224.5964.1 ID=prot_H-paniculata_contig224.5964.1|Name=mRNA_H-paniculata_contig224.5964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=268bp
MGKARGPKRKEAPARKRLQINNPSSSGLLQKQSRRNKGSGVHCTEGLDGG AAVGKRTLGQMLLVPNKRARGGKRRRQRSNAPVPNQPKSSETATIQAEYA SVDARASAKKASEESQRLQAPVKVRLVPATAMLRMPSQGNVSLQALRASS SARMVDALLQSITDDPAPDALPARPVRSAGRKRKGNPYAALQDDPSDEEY DSNKIQGEQSDDTFSSRNAALAGSGLRSVKCPPLTFAAPSGFGGANSTSS GRMSFAGGAVGGGGSGAS back to topmRNA from alignment at H-paniculata_contig224:33271..38295- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig224.5964.1 ID=mRNA_H-paniculata_contig224.5964.1|Name=mRNA_H-paniculata_contig224.5964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5025bp|location=Sequence derived from alignment at H-paniculata_contig224:33271..38295- (Halopteris paniculata Hal_grac_a_UBK monoicous) TGACAACTCCTTTCAATTCCTCTGTCCTCTTGTCTCCTCTGTCTCTCCTC
TGTGACTCCTTATTCTCACACCATCCATTGTGTACCCCAGCTATACTTCC
GTTCATCCTAGCTTGGAAATTTAGGCGCACCTACACGCAGTTTACAGCTG
TTGTAGATTTTGCACCAAGAGAGTAGTCTCGGAGTTTTCGTCTGTCTTCG
TAGATTGAGACAGACCACGATGGGCAAGGCTCGTGGACCTAAGCGTAAGG
AGGCCCCTGCCCGTAAGCGACTGCAGATCAACAACCCCAGCAGCAGTGGG
CTACTTCAGAAGCAGAGTCGAAGAAACAAGGGTTCGGGGGTGCACTGTAC
GGAAGGACTCGATGGTGAGAGAAGAAATGCGGACACCTTCTGTCATGCAA
AGCAGCTCGTACCGATGGATTATGTGATGGTGTCAGACCTTCCTGGTGCC
AGAAACAGTTATACCGTATCACAGTGCAATGTATCTGGTGCATGGCAGGA
ATCGGGGGCGACTGTCCGTATCCAGGAAGACTGTTGTGTACCGATATTCT
GATTTTCTGTTATGTTGTCTTATTATCGAACTACGATACCTGTTTTTTCC
AAGGTTTGAGGACACAGGTAAACAGTGGATATAAGTTGAGTTTACAGTAG
TTGACGGCAGGCAGTTTCGCCGCACTTCTTCTGTACTACATGCATTGTGG
TTCATATCGTGTAGCTTGCGACTGAGAAATGCGCAAGGGTTTGTGAGCTC
CACTTTGGACGTGGTGTAGGACGGGAGATCTAGGCTAGAGACTGATGAAA
ATGTTTCAAACCCTCGTACGACTCGACACGATTTCCGAACAAACATACAT
CTGACAGTTCCCCGGCACGCGGGGGGGGTGGATTCTTGCCCTCGCAATGT
TAGATCAAGACCGCGCCCCAGTTGGGTTCAGGGTGATCATCCGTGTTTTG
TATCTCGTTTATGTATCTGGCGTGTTTAGCGAAACCTAGTCCCCAACTAT
TACCCACTGGGGTCGAAAAAACGGTTGAAAGTACAAATTTCTCACGAGTC
AGTGTGATCACCGTACCTGTGTGAGGATTTGTTTGATTTCATACCCTGAG
GTGCGGCGTTGTGTAGAACACCCACTGGTGCACGGCCAGTCACTCAGCAT
GCGGTGTGAGGTTTGTGTTCCTATCCAGTGTTGCAGTCGTAGTGCACAAA
ACCAGCCAACTCTTGTCTGTGGCGTCTTGACGACAACTCCTCTGGCATGA
ACACAAACCCATCGTAGACATTGTGTTACCGAAAAATCGGATTCGTTGTT
TCGTGTTTGTCCAGATAGGCATTAGATTATCAGATAGTGATTAGTTGGGA
TCCGGTGGTATAGGGACTGCCCAAAAACTGCTATATTCTGCATGCTTCAC
AGTGCGCCAACAAATGAACAGCAGCATGTACCTCGTACCAGCAACAGGTG
TTTATGAACTCAAGAGCACAGGCACAGTATGACAAACGCTCGGAAGACGA
CTACCCCGTAGGTCAGCTCTACGTCTTAACGCTAGAGATTCGAGATCGTT
GTGGCACAAGTTGGCTGTAGCGGCGGGTTCTAGTAGGTAGGCAGATTAGA
ACATTGTTGTCGCGTAAAGATATGAACCACTTTTTCAAGTTCTGGAAACA
CCGTAGATAACCATAATGTACAGGATGAGGAAGTAGATGCAGAGTAAGCG
ATGCAATATGCTGTTAAATCTGAACCCCCTTGCGCCACGTTTATGCCGCA
CCTTGTCCACATTCCTCTCCTTACGACACAAAAATGCCGATTGGTCTACT
GGGACTACCAGGTGGTGCGGCAGTGGGCAAGTGAGTGCATAGCTCGTGGG
GTGCACTACCATCCCTCTATTACGTGGAACGCAATTTTGAGGGCATGTAT
AGTTTTGTTGCTGCACTCGAATTGATCTTGTCGTGAAACTGTCGAAGTGA
AGGCTACTAGAATGATACCAGGATGTTGGCCCACACACTACGGCCGTAGC
GATACTGCGACAAGCTAAGTGGATGCGTCAAACATGCAGCACAGGCAGGC
AGGCGATGACGCTAGCAAGCTTTTAAGCACAATTGTTAGTCAGAAGAAGA
AAAGTGAAGTATGCAAAAAAAAAGTTAATTATTCCCTCAGTTTCGCGACG
AAAAAACGTTTTATGAAGGTGTGTGCCCGACTGACATGCGTCCCAAAGTA
GGATATCAACGTACTAGTATCAAGTGATGGACTCATAACCCTTGAACATA
TATCTTCAGATTGCAGGTTGTTGTCTGCAAGTGGAAGGATATCGAAGTAG
AAACGTCGTTCCATACAAAATAGGCGCGTGTATGTATACCAATCTACCCC
TGACACGTGTGTAGTTGACCTTCTTCAACCTACGTGACGATACACATAAG
CTATGCGTCACTGTAATACTGTCATGTGTCTCAATCATATATGAGGTTGT
CCAACATTCGTATCCACTGCAAGATAACCTTGGTACGAAGTACAGTGCAC
GACAGCGGGAACCTGTTGTATGTTAGTATAGTGTCCACTCAAGTAGCTTT
TGCTAATTTTTATATGGTCGTGTATGGGTATCAGTGAGCTGCTCGTCGCA
GACCCCCTCCGCACCCGAGCGCACCGACACCAACGTCTCGATACGAAAGA
AGAGATTGGTCGAAGTTTGTATATTCCACAAGAAATACCAATGGTCACTA
GTTGTGACAAGAAACTCATTTTGAAATGAGACGTTGGTGTGGGTAGACTC
GAGGCTGGTACAAGGAGCTCACAGCTGCACCTTCGCTATACATGGCCAAA
TCAAAATTTGCAACAGGAGTTCGTTTTGGGCAAATACTCTAACCACAACG
TTCAATACCCTTTATTACCCTCTTCGGCTACAGCATTATATATTGAGAAG
CCGGGAATCTTGGTTCATCGAGGTCCTCAGGCGCGATGTCACAGAGGTAG
TTCGTGTGCTCTTCCTACACCACGTTCAGGGACGCTGATGCAATAACGAT
CACGTGCCTCTGCTCGCTATGAGGATCAGGCTCGCCTAGGCGTGTATCCT
GTACACTCGCCTTGATAGCTTTCTCATGGTAGGGAAATGGCACTGTGTTT
ACGCGTTTTGTGTTTGCGACGTGTATTGAGCATCTCTACGTCGCGGAACG
TTTTTGAGAAAGGATCCGCCCGAGCTCTTCGAATAAAATGGTGTTTCTCC
AGCTACATGACGGTGGTACTGCTTGCTGGAGCAAGATAATATGCCGTAGA
TCCATATTTTCCCTGGCCACATTTTTGCGATAGGCGGACACTAGGCCAGA
TGCTACTGGTCCCAAATAAAAGAGCTCGCGGCGGCAAGAGACGAAGGCAG
AGGAGCAATGCACCGGTTCCTAATCAGGTTCGAGCATCGTGTAGTGTAGC
ATGAATCCCGCTGTGGTCAATGCCGGGCCGTTACTTTTGCCCAAAGCATT
TGCTTTGTTGGGCAGCTTCCGAATAGCATTGGAATGGCTCCTCCGTCGCC
TTTGTAGCGAACTTCTTCCGTGTAGCACTGTCAAGCACGATACAGCTGCA
TGCACACAATATTAACAAGGCGCAGCTACAGCAATTCGAGGTAAGTCGCA
TACCGTGTCATGTGCGATGCTGCGCTTAACCCTGCGCCGCTTGTCCTTAT
CCGTGGTTCGAACCCTTTAACACTTGATCGGTATATACTAGAGTTCCTGA
TGTACAAAGATCCTGATTTTGTATGGATGGGTTGCTAGGGGCTAACTAAC
ACTCAGCCGCCGGCTGTTCTGTGTTTTTCACCTAGCAGCCCAAATCGTCG
GAGACTGCCACGATCCAAGCGGAGTATGCCTCCGTGGACGCTCGTGCGAG
CGCTAAGAAGGCTTCCGAGGAATCGCAACGGTTGCAGGCGCCTGTCAAGG
TTCGGTTAGTGCCGGCCACGGCGATGTTGCGCATGCCGAGCCAAGGGTGA
GCAATGTTGCGCTGGCGCTTTTAAAGTTCAGTTCGATTGTCGAAATATAC
AGGGCGGTGGGCACCCGGGTGTGCCAGGACCATCGTTTGCTTCGCGTAAG
GTATCAATCATGGCGTTCGAATGCCACATTTTTTGTATCTTCCGCTGAGT
ATCGTCGAGCCATACCGTGTCTGGTCCCATGTGAGCGCATAAAATACAAG
CCCAATATTTTCCGAGAGACAGGTGCTTCAGCTGCCGGCGCAGCTGTTCC
CAGTATGTTTAATCCATTTCCTTGACAGCGTCTTTTATTTCCCAAACTGT
TGACTTTCACGTGCTGACTCCACTGCCACCAGCAATGTCTCTTTGCAGGC
TCTCCGAGCGTCTAGTTCCGCTCGTATGGTGGACGCTTTGCTTCAAAGCA
TCACCGACGATCCGGTAAGGAAGGCTTATCGTGTCCTCGCATCGGTACTC
CAATATCGGTCGATGCATTTTGTGCGGCACGAGAGATTAGGATGAAGAAC
CTGAAGAATCGTTTTTGATCTGCCTCTCGCGATATATACCGCTACAATCG
AACGTCAGTATCACGCACAATACGATTCGAGTCAAGGCCTTTTGCATAGT
GCCCCACAATTGTTCCAGGCGATCTGAGGCTACTATTCGTGCTGGTGGGT
TGTGCTCGATATCCAGGTGCGTTGCTATCCGTCGTATCTATTCGATTCCA
GGCGCTTTACTTCAGTTCACAATGTAATGTTTGTCGCCCATTTTGCTATT
GTTCTCGCTCCTGACTCAGGCGCCGGACGCGCTGCCGGCGCGCCCTGTGC
GTTCGGCTGGGCGTAAACGCAAAGGTAACCCCTACGCTGCGTTGCAAGAC
GACCCTTCAGATGAAGAATATGATTCCAACAAAATCCAAGGCGAACAAAG
TGACGATACTTTTTCTAGCAGAAACGCGGCGCTGGCAGGCAGTGGTCTAA
GGAGTGTGAAATGCCCGCCTTTAACGTTTGCAGCGCCTTCTGGGTTTGGC
GGAGCAAATTCAACGAGTAGTGGCCGCATGAGTTTTGCTGGTGGGGCTGT
AGGGGGTGGTGGGTCGGGTGCGAGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig224:33271..38295- >mRNA_H-paniculata_contig224.5964.1 ID=mRNA_H-paniculata_contig224.5964.1|Name=mRNA_H-paniculata_contig224.5964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at H-paniculata_contig224:33271..38295- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGCAAGGCTCGTGGACCTAAGCGTAAGGAGGCCCCTGCCCGTAAGCG ACTGCAGATCAACAACCCCAGCAGCAGTGGGCTACTTCAGAAGCAGAGTC GAAGAAACAAGGGTTCGGGGGTGCACTGTACGGAAGGACTCGATGATGGG CAAGGCTCGTGGACCTAAGCGTAAGGAGGCCCCTGCCCGTAAGCGACTGC AGATCAACAACCCCAGCAGCAGTGGGCTACTTCAGAAGCAGAGTCGAAGA AACAAGGGTTCGGGGGTGCACTGTACGGAAGGACTCGATGGTGGTGCGGC AGTGGGCAAGTGGTGCGGCAGTGGGCAAGCGGACACTAGGCCAGATGCTA CTGGTCCCAAATAAAAGAGCTCGCGGCGGCAAGAGACGAAGGCAGAGGAG CAATGCACCGGTTCCTAATCAGGCGGACACTAGGCCAGATGCTACTGGTC CCAAATAAAAGAGCTCGCGGCGGCAAGAGACGAAGGCAGAGGAGCAATGC ACCGGTTCCTAATCAGCCCAAATCGTCGGAGACTGCCACGATCCAAGCGG AGTATGCCTCCGTGGACGCTCGTGCGAGCGCTAAGAAGGCTTCCGAGGAA TCGCAACGGTTGCAGGCGCCTGTCAAGGTTCGGTTAGTGCCGGCCACGGC GATGTTGCGCATGCCGAGCCAAGGCCCAAATCGTCGGAGACTGCCACGAT CCAAGCGGAGTATGCCTCCGTGGACGCTCGTGCGAGCGCTAAGAAGGCTT CCGAGGAATCGCAACGGTTGCAGGCGCCTGTCAAGGTTCGGTTAGTGCCG GCCACGGCGATGTTGCGCATGCCGAGCCAAGGCAATGTCTCTTTGCAGGC TCTCCGAGCGTCTAGTTCCGCTCGTATGGTGGACGCTTTGCTTCAAAGCA TCACCGACGATCCGCAATGTCTCTTTGCAGGCTCTCCGAGCGTCTAGTTC CGCTCGTATGGTGGACGCTTTGCTTCAAAGCATCACCGACGATCCGGCGC CGGACGCGCTGCCGGCGCGCCCTGTGCGTTCGGCTGGGCGTAAACGCAAA GGTAACCCCTACGCTGCGTTGCAAGACGACCCTTCAGATGAAGAATATGA TTCCAACAAAATCCAAGGCGAACAAAGTGACGATACTTTTTCTAGCAGAA ACGCGGCGCTGGCAGGCAGTGGTCTAAGGAGTGTGAAATGCCCGCCTTTA ACGTTTGCAGCGCCTTCTGGGTTTGGCGGAGCAAATTCAACGAGTAGTGG CCGCATGAGTTTTGCTGGTGGGGCTGTAGGGGGTGGTGGGTCGGGTGCGA GCGCGCCGGACGCGCTGCCGGCGCGCCCTGTGCGTTCGGCTGGGCGTAAA CGCAAAGGTAACCCCTACGCTGCGTTGCAAGACGACCCTTCAGATGAAGA ATATGATTCCAACAAAATCCAAGGCGAACAAAGTGACGATACTTTTTCTA GCAGAAACGCGGCGCTGGCAGGCAGTGGTCTAAGGAGTGTGAAATGCCCG CCTTTAACGTTTGCAGCGCCTTCTGGGTTTGGCGGAGCAAATTCAACGAG TAGTGGCCGCATGAGTTTTGCTGGTGGGGCTGTAGGGGGTGGTGGGTCGG GTGCGAGC back to top
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