mRNA_H-paniculata_contig22362.5952.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: A0A1L2F1Q1_9PHAE (Cytochrome b6-f complex subunit 4 n=58 Tax=Stramenopiles TaxID=33634 RepID=A0A1L2F1Q1_9PHAE) HSP 1 Score: 284 bits (726), Expect = 9.720e-97 Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 1
Query: 1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 414
GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSA+GEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVP GLITVPFIENVNKFQNPFRRP+ASTVFLIGTF+AIWLGIGACLPINKA+TLGLF
Sbjct: 23 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSAIGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPAGLITVPFIENVNKFQNPFRRPVASTVFLIGTFIAIWLGIGACLPINKALTLGLF 160
BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: B2XTC2_HETAK (Cytochrome b6-f complex subunit 4 n=4 Tax=Ochrophyta TaxID=2696291 RepID=B2XTC2_HETAK) HSP 1 Score: 262 bits (669), Expect = 4.770e-88 Identity = 121/138 (87.68%), Postives = 131/138 (94.93%), Query Frame = 1
Query: 1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 414
GHNYYGEPAWPND+ Y+FP+ ILGTF IV GLAV+EPSALGE ANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVL+MA+VP+GLITVPFIEN+NKFQNPFRRPIASTVFL GT VAIWLGIGACLPIN+A+TLGLF
Sbjct: 23 GHNYYGEPAWPNDLLYIFPVVILGTFSIVTGLAVLEPSALGEPANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLSMAAVPLGLITVPFIENINKFQNPFRRPIASTVFLFGTVVAIWLGIGACLPINQAVTLGLF 160
BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: A0A7U0KT28_OLILU (Cytochrome b6-f complex subunit 4 n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0KT28_OLILU) HSP 1 Score: 259 bits (661), Expect = 7.920e-87 Identity = 118/138 (85.51%), Postives = 132/138 (95.65%), Query Frame = 1
Query: 1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 414
GHNYYGEPAWPND+ Y+FP+CILGTF I+IGLA++EPSALGEKA+PFATPLEILPEWYFFPTFN+LRVLPNKLLGVLAMA+VP GLITVPFIENVNKFQNPFRRPIAS VFL+GT +AIWLGIGA +PI+KA+TLGLF
Sbjct: 23 GHNYYGEPAWPNDLLYIFPVCILGTFSILIGLAILEPSALGEKADPFATPLEILPEWYFFPTFNILRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPIASIVFLLGTVIAIWLGIGATMPIDKALTLGLF 160
BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: A0A0D3M5D2_9STRA (Cytochrome b6-f complex subunit 4 n=17 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A0D3M5D2_9STRA) HSP 1 Score: 252 bits (643), Expect = 4.390e-84 Identity = 113/138 (81.88%), Postives = 128/138 (92.75%), Query Frame = 1
Query: 1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 414
GHNYYGEPAWPND+ Y+FP+ ILGTF +VIGL+ +EPSA+GEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGV+AMA+VP GL+TVPFIEN+N FQNPFRRPIAS +FLIGT AIW GIGAC+PI+KA+TLGLF
Sbjct: 23 GHNYYGEPAWPNDLLYIFPVVILGTFALVIGLSTLEPSAIGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVIAMAAVPAGLLTVPFIENINTFQNPFRRPIASFMFLIGTVFAIWFGIGACMPISKAVTLGLF 160
BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: A0A516ZA44_9STRA (Cytochrome b6-f complex subunit 4 n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA44_9STRA) HSP 1 Score: 252 bits (643), Expect = 4.390e-84 Identity = 116/138 (84.06%), Postives = 126/138 (91.30%), Query Frame = 1
Query: 1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 414
GHNYYGEPAWPND+ Y+FP+ ILGTF I+IGLAV+EPSALGEKA+PFATPLEILPEWYFFPTFNLLRVLPNKLLGV+AMA+VP GLITVPFIENVNKFQNPFRRP+A VFL GT AIW GIGACLPI A+TLGLF
Sbjct: 23 GHNYYGEPAWPNDLLYIFPVVILGTFAILIGLAVLEPSALGEKADPFATPLEILPEWYFFPTFNLLRVLPNKLLGVIAMAAVPAGLITVPFIENVNKFQNPFRRPLAMAVFLFGTAFAIWFGIGACLPIKDAVTLGLF 160
BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: A0A1X9PVG8_9RHOD (Cytochrome b6-f complex subunit 4 n=1 Tax=Bulboplastis apyrenoidosa TaxID=1070855 RepID=A0A1X9PVG8_9RHOD) HSP 1 Score: 249 bits (637), Expect = 3.610e-83 Identity = 113/138 (81.88%), Postives = 125/138 (90.58%), Query Frame = 1
Query: 1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 414
GHNYYGEPAWPND+ YMFP+CILGT +GLAVMEPSALGE +NPFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MA+VP GLITVPF+ENVNKFQNPFRRP+A V+L GT +IWLGIGA LPINKA+TLGLF
Sbjct: 23 GHNYYGEPAWPNDLLYMFPVCILGTIACCVGLAVMEPSALGEPSNPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPAGLITVPFLENVNKFQNPFRRPLAMAVYLTGTVTSIWLGIGATLPINKALTLGLF 160
BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: M1K3S0_DIALT (Cytochrome b6-f complex subunit 4 n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1K3S0_DIALT) HSP 1 Score: 248 bits (634), Expect = 1.030e-82 Identity = 110/138 (79.71%), Postives = 129/138 (93.48%), Query Frame = 1
Query: 1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 414
GHNYYGEPAWPND+ Y+FP+ ILGT ++GL+V+EPS+LGEKA+PFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MA+VP GLITVPF+ENVNKFQNPFRRPIAS F++GTF+AIWLGIGA +PIN+A+TLGLF
Sbjct: 23 GHNYYGEPAWPNDLLYIFPVVILGTIACIVGLSVLEPSSLGEKADPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPAGLITVPFLENVNKFQNPFRRPIASLTFVLGTFIAIWLGIGATMPINQALTLGLF 160
BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: A0A3G2QYE4_9STRA (Cytochrome b6-f complex subunit 4 n=6 Tax=Ochrophyta TaxID=2696291 RepID=A0A3G2QYE4_9STRA) HSP 1 Score: 247 bits (630), Expect = 4.210e-82 Identity = 111/138 (80.43%), Postives = 125/138 (90.58%), Query Frame = 1
Query: 1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 414
GHNYYGEPAWPND+ Y+FP+ I GTF VIGL+V+EPS LGEKANPFATPLEILPEWY FPTFNLLRV+PNKLLG+ +MA+VP+GL+TVPF ENVNKFQNPFRRPIAS VFL+GTFVAIWLG GA +PI+KAITLG F
Sbjct: 23 GHNYYGEPAWPNDLLYIFPVVIFGTFACVIGLSVLEPSGLGEKANPFATPLEILPEWYLFPTFNLLRVIPNKLLGLASMAAVPLGLLTVPFFENVNKFQNPFRRPIASVVFLVGTFVAIWLGFGATMPIDKAITLGFF 160
BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: PETD_EMIHU (Cytochrome b6-f complex subunit 4 n=13 Tax=cellular organisms TaxID=131567 RepID=PETD_EMIHU) HSP 1 Score: 246 bits (629), Expect = 5.970e-82 Identity = 111/138 (80.43%), Postives = 124/138 (89.86%), Query Frame = 1
Query: 1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 414
GHNYYGEPAWPND+ Y+FP+CILGT IGL V+EP+ LGEKA+PFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MA+VPIGLITVPFIENVNKFQNPFRRP+AS VFL GTF A WLGIGA +PI +A+TLG F
Sbjct: 23 GHNYYGEPAWPNDLLYIFPVCILGTIACCIGLGVLEPTPLGEKADPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPIGLITVPFIENVNKFQNPFRRPVASLVFLFGTFTAFWLGIGATMPITQALTLGFF 160
BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: PETD_PORPU (Cytochrome b6-f complex subunit 4 n=14 Tax=Bangiaceae TaxID=31345 RepID=PETD_PORPU) HSP 1 Score: 246 bits (629), Expect = 5.970e-82 Identity = 111/138 (80.43%), Postives = 126/138 (91.30%), Query Frame = 1
Query: 1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 414
GHNYYGEPAWPND+ Y+FP+ ILGT IGLA++EPS+LGEK+NPFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MA+VP GL+TVPFIENVNKFQNPFRRPIA+T+FLI T + IWLGIGA +PIN AITLGLF
Sbjct: 23 GHNYYGEPAWPNDLLYVFPVVILGTIACSIGLAILEPSSLGEKSNPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPAGLLTVPFIENVNKFQNPFRRPIATTIFLISTVITIWLGIGATMPINNAITLGLF 160 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22362.5952.1 >prot_H-paniculata_contig22362.5952.1 ID=prot_H-paniculata_contig22362.5952.1|Name=mRNA_H-paniculata_contig22362.5952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPback to top mRNA from alignment at H-paniculata_contig22362:1737..2153- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22362.5952.1 ID=mRNA_H-paniculata_contig22362.5952.1|Name=mRNA_H-paniculata_contig22362.5952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=417bp|location=Sequence derived from alignment at H-paniculata_contig22362:1737..2153- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22362:1737..2153- >mRNA_H-paniculata_contig22362.5952.1 ID=mRNA_H-paniculata_contig22362.5952.1|Name=mRNA_H-paniculata_contig22362.5952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig22362:1737..2153- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |