mRNA_H-paniculata_contig22200.5896.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22200.5896.1 vs. uniprot
Match: D7FHN4_ECTSI (Acyl carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHN4_ECTSI) HSP 1 Score: 123 bits (308), Expect = 1.700e-30 Identity = 74/113 (65.49%), Postives = 84/113 (74.34%), Query Frame = 2
Query: 2 AFVVPS----PRVISSLRCTNSAARSRN-VMPLSAGGSADEVFGKVKGIVASQLGVEETQVVPTASFTGDLGADSLDTVELIMALEEGFDIEIEDSVAADMATVQDAVDFIAK 325
AFV PS R I++ R +AAR R V PLS G ++ KV+GIV SQL V+ETQVVP ASFT DLGADSLDTVELIMALEEGFDIEIED VAA++ TV+DAV FIAK
Sbjct: 18 AFVAPSVSCVSRGIAAHRGFATAARQRGGVSPLSMAGDEADILNKVRGIVVSQLAVDETQVVPAASFTQDLGADSLDTVELIMALEEGFDIEIEDEVAAEIGTVEDAVKFIAK 130
BLAST of mRNA_H-paniculata_contig22200.5896.1 vs. uniprot
Match: UPI001680A5E1 (acyl carrier protein n=1 Tax=Leptolyngbya sp. FACHB-36 TaxID=2692808 RepID=UPI001680A5E1) HSP 1 Score: 101 bits (251), Expect = 6.860e-23 Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 2
Query: 98 SADEVFGKVKGIVASQLGVEETQVVPTASFTGDLGADSLDTVELIMALEEGFDIEIEDSVAADMATVQDAVDFIAKQ 328
SA E+F KV+ IVA QLGVE ++VVP+ASF DLGADSLDTVEL+MALEE FDIEI D A ++ATVQ AVD+I+ +
Sbjct: 2 SATEIFEKVQNIVAEQLGVEASEVVPSASFANDLGADSLDTVELVMALEEEFDIEIPDEAAEEIATVQAAVDYISNK 78
BLAST of mRNA_H-paniculata_contig22200.5896.1 vs. uniprot
Match: UPI0019F50762 (Acyl carrier protein n=1 Tax=Synechococcales cyanobacterium T60_A2020_003 TaxID=2774349 RepID=UPI0019F50762) HSP 1 Score: 99.0 bits (245), Expect = 4.530e-22 Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 2
Query: 101 ADEVFGKVKGIVASQLGVEETQVVPTASFTGDLGADSLDTVELIMALEEGFDIEIEDSVAADMATVQDAVDFIAKQ 328
+DE F KVK IV+ QLGV+E+QV P ASF DLGADSLDTVEL+MALEE FDIEI D A ++ATVQ AVD+I +
Sbjct: 2 SDETFQKVKKIVSEQLGVDESQVTPEASFANDLGADSLDTVELVMALEEEFDIEIPDEAAENIATVQAAVDYITSK 77
BLAST of mRNA_H-paniculata_contig22200.5896.1 vs. uniprot
Match: A0A8J7ATF9_9CYAN (Acyl carrier protein n=1 Tax=Oculatella sp. FACHB-28 TaxID=2692845 RepID=A0A8J7ATF9_9CYAN) HSP 1 Score: 99.0 bits (245), Expect = 4.660e-22 Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 2
Query: 98 SADEVFGKVKGIVASQLGVEETQVVPTASFTGDLGADSLDTVELIMALEEGFDIEIEDSVAADMATVQDAVDFI 319
S +E+F KVK IV+ QLGVEET+V P ASF DLGADSLDTVEL+MALEE FDIEI D A +ATVQ AVD+I
Sbjct: 2 SQEEIFQKVKKIVSEQLGVEETEVKPEASFANDLGADSLDTVELVMALEEEFDIEIPDEAAEGIATVQAAVDYI 75
BLAST of mRNA_H-paniculata_contig22200.5896.1 vs. uniprot
Match: A0A6M0C6D8_9CYAN (Acyl carrier protein n=1 Tax=Okeania sp. SIO2H7 TaxID=2607802 RepID=A0A6M0C6D8_9CYAN) HSP 1 Score: 97.8 bits (242), Expect = 1.180e-21 Identity = 51/76 (67.11%), Postives = 58/76 (76.32%), Query Frame = 2
Query: 101 ADEVFGKVKGIVASQLGVEETQVVPTASFTGDLGADSLDTVELIMALEEGFDIEIEDSVAADMATVQDAVDFIAKQ 328
+D VF KVKGIV QLGVEE V P +SF DLGADSLDTVEL+MALEE FDIEI D A +ATVQ AVD+I ++
Sbjct: 2 SDAVFDKVKGIVVEQLGVEEDTVKPESSFANDLGADSLDTVELVMALEEEFDIEIPDEAAEGIATVQSAVDYIVEK 77
BLAST of mRNA_H-paniculata_contig22200.5896.1 vs. uniprot
Match: ACP_SYNE7 (Acyl carrier protein n=3 Tax=Synechococcus elongatus TaxID=32046 RepID=ACP_SYNE7) HSP 1 Score: 97.4 bits (241), Expect = 1.680e-21 Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 2
Query: 98 SADEVFGKVKGIVASQLGVEETQVVPTASFTGDLGADSLDTVELIMALEEGFDIEIEDSVAADMATVQDAVDFIAKQ 328
S +++F KVK IVA QL V+ +V P +SF DLGADSLDTVEL+MALEE FDIEI D A +ATVQDAVDFIA +
Sbjct: 2 SQEDIFSKVKDIVAEQLSVDVAEVKPESSFQNDLGADSLDTVELVMALEEAFDIEIPDEAAEGIATVQDAVDFIASK 78
BLAST of mRNA_H-paniculata_contig22200.5896.1 vs. uniprot
Match: A0A2V9TZT3_9BACT (Acyl carrier protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9TZT3_9BACT) HSP 1 Score: 97.1 bits (240), Expect = 2.400e-21 Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 2
Query: 107 EVFGKVKGIVASQLGVEETQVVPTASFTGDLGADSLDTVELIMALEEGFDIEIEDSVAADMATVQDAVDFIAK 325
E+ KVK I++ QLGVEE +V PTASF DLGADSLDTVEL+MALEE FDIEI D A + TVQDA+D+I K
Sbjct: 3 EITEKVKQIISEQLGVEEAEVTPTASFVDDLGADSLDTVELVMALEENFDIEIPDDAAEKIRTVQDAIDYIDK 75
BLAST of mRNA_H-paniculata_contig22200.5896.1 vs. uniprot
Match: A0A8J6QYH8_9CYAN (Acyl carrier protein n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6QYH8_9CYAN) HSP 1 Score: 96.7 bits (239), Expect = 3.330e-21 Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = 2
Query: 104 DEVFGKVKGIVASQLGVEETQVVPTASFTGDLGADSLDTVELIMALEEGFDIEIEDSVAADMATVQDAVDFIAKQ 328
+E+F KV+ IV+ QLGVE ++V P ASF DLGADSLDTVEL+MALEE FDIEI D A ++ATVQ+AVD+I+ +
Sbjct: 4 EEIFAKVQKIVSEQLGVEASEVKPAASFANDLGADSLDTVELVMALEEEFDIEIPDEAAEEIATVQNAVDYISNK 78
BLAST of mRNA_H-paniculata_contig22200.5896.1 vs. uniprot
Match: A0A0P4UM52_9CYAN (Acyl carrier protein n=2 Tax=Leptolyngbyaceae TaxID=1890438 RepID=A0A0P4UM52_9CYAN) HSP 1 Score: 96.7 bits (239), Expect = 3.520e-21 Identity = 50/75 (66.67%), Postives = 59/75 (78.67%), Query Frame = 2
Query: 98 SADEVFGKVKGIVASQLGVEETQVVPTASFTGDLGADSLDTVELIMALEEGFDIEIEDSVAADMATVQDAVDFIA 322
S E+F KV+ IVA QLGV+ +VVP ASF DLGADSLDTVEL+MALEE FDIEI D A ++ATVQ AVD+I+
Sbjct: 2 SETEIFDKVQKIVADQLGVDAEKVVPAASFANDLGADSLDTVELVMALEEEFDIEIPDEAAEEIATVQSAVDYIS 76
BLAST of mRNA_H-paniculata_contig22200.5896.1 vs. uniprot
Match: UPI0017479778 (acyl carrier protein n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI0017479778) HSP 1 Score: 96.3 bits (238), Expect = 4.620e-21 Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 2
Query: 98 SADEVFGKVKGIVASQLGVEETQVVPTASFTGDLGADSLDTVELIMALEEGFDIEIEDSVAADMATVQDAVDFIAKQ 328
S DE+F KVK IVA QL V+ QV P ASF DLGADSLDTVEL+MALEE FD+EI D A +ATVQ AVD+I+++
Sbjct: 2 SQDEIFQKVKKIVAEQLSVDPEQVTPEASFANDLGADSLDTVELVMALEEEFDVEIPDEAAEGIATVQAAVDYISQK 78 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22200.5896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22200.5896.1 >prot_H-paniculata_contig22200.5896.1 ID=prot_H-paniculata_contig22200.5896.1|Name=mRNA_H-paniculata_contig22200.5896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp MPLSAGGSADEVFGKVKGIVASQLGVEETQVVPTASFTGDLGADSLDTVEback to top mRNA from alignment at H-paniculata_contig22200:1037..3581- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22200.5896.1 ID=mRNA_H-paniculata_contig22200.5896.1|Name=mRNA_H-paniculata_contig22200.5896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2545bp|location=Sequence derived from alignment at H-paniculata_contig22200:1037..3581- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22200:1037..3581- >mRNA_H-paniculata_contig22200.5896.1 ID=mRNA_H-paniculata_contig22200.5896.1|Name=mRNA_H-paniculata_contig22200.5896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig22200:1037..3581- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |