mRNA_H-paniculata_contig2219.5890.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2219.5890.1
Unique NamemRNA_H-paniculata_contig2219.5890.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2219.5890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2219contigH-paniculata_contig2219:12297..12834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size538
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2219.5890.1prot_H-paniculata_contig2219.5890.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2219 12345..12740 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.2888632-UTR-H-paniculata_contig2219:12296..123441622929613.2888632-UTR-H-paniculata_contig2219:12296..12344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2219 12297..12344 +
1691480935.6666498-UTR-H-paniculata_contig2219:12296..123441691480935.6666498-UTR-H-paniculata_contig2219:12296..12344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2219 12297..12344 +
1622929613.3172278-UTR-H-paniculata_contig2219:12740..128341622929613.3172278-UTR-H-paniculata_contig2219:12740..12834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2219 12741..12834 +
1691480935.699428-UTR-H-paniculata_contig2219:12740..128341691480935.699428-UTR-H-paniculata_contig2219:12740..12834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2219 12741..12834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.3037837-CDS-H-paniculata_contig2219:12344..127401622929613.3037837-CDS-H-paniculata_contig2219:12344..12740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2219 12345..12740 +
1691480935.680294-CDS-H-paniculata_contig2219:12344..127401691480935.680294-CDS-H-paniculata_contig2219:12344..12740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2219 12345..12740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2219.5890.1

>prot_H-paniculata_contig2219.5890.1 ID=prot_H-paniculata_contig2219.5890.1|Name=mRNA_H-paniculata_contig2219.5890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MVVAVQLLLLLLSEETGGGTGSNVAATGSRCSVSTVARTAPRIGRESETA
GSAALSAVIISPSIVTGAAGSITSKFCGRCCCCCCCCCCCWDVVRLSAPA
ALSSQPQLRLKPSPRRDASSSREVVAGETWP*
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mRNA from alignment at H-paniculata_contig2219:12297..12834+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2219.5890.1 ID=mRNA_H-paniculata_contig2219.5890.1|Name=mRNA_H-paniculata_contig2219.5890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=538bp|location=Sequence derived from alignment at H-paniculata_contig2219:12297..12834+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCACCACTACCACCACCCCCAGTCGATGAATGCGGTGCAACGGACAT
GGTTGTGGCGGTACAATTACTGCTGTTGTTGCTCTCGGAAGAGACGGGGG
GAGGAACAGGCTCGAACGTCGCTGCCACCGGTTCCCGGTGTTCCGTATCG
ACTGTTGCGAGGACCGCTCCGCGGATCGGTCGGGAGTCGGAAACAGCAGG
TTCGGCTGCACTCTCGGCAGTCATCATCTCCCCGTCCATTGTCACGGGTG
CGGCGGGATCGATAACATCCAAGTTTTGTGGTCGCTGCTGCTGTTGTTGC
TGTTGCTGTTGCTGCTGCTGGGACGTGGTTCGCTTATCCGCACCAGCTGC
GCTGTCGTCCCAACCCCAGCTCCGCCTTAAACCCTCCCCGCGCCGAGATG
CATCATCATCAAGAGAAGTCGTGGCAGGGGAGACATGGCCGTGATGATCA
GTTGCTGAAGGCAATACCATCGCAGCTCCATCTCCTTCCCCTGTCCTGAT
TGCCCTCCCCCGTGGAGAGGTCTCGCGATACGTGTAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2219:12297..12834+

>mRNA_H-paniculata_contig2219.5890.1 ID=mRNA_H-paniculata_contig2219.5890.1|Name=mRNA_H-paniculata_contig2219.5890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig2219:12297..12834+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGTGGCGGTACAATTACTGCTGTTGTTGCTCTCGGAAGAGACGGG
GGGAGGAACAGGCTCGAACGTCGCTGCCACCGGTTCCCGGTGTTCCGTAT
CGACTGTTGCGAGGACCGCTCCGCGGATCGGTCGGGAGTCGGAAACAGCA
GGTTCGGCTGCACTCTCGGCAGTCATCATCTCCCCGTCCATTGTCACGGG
TGCGGCGGGATCGATAACATCCAAGTTTTGTGGTCGCTGCTGCTGTTGTT
GCTGTTGCTGTTGCTGCTGCTGGGACGTGGTTCGCTTATCCGCACCAGCT
GCGCTGTCGTCCCAACCCCAGCTCCGCCTTAAACCCTCCCCGCGCCGAGA
TGCATCATCATCAAGAGAAGTCGTGGCAGGGGAGACATGGCCGTGAATGG
TTGTGGCGGTACAATTACTGCTGTTGTTGCTCTCGGAAGAGACGGGGGGA
GGAACAGGCTCGAACGTCGCTGCCACCGGTTCCCGGTGTTCCGTATCGAC
TGTTGCGAGGACCGCTCCGCGGATCGGTCGGGAGTCGGAAACAGCAGGTT
CGGCTGCACTCTCGGCAGTCATCATCTCCCCGTCCATTGTCACGGGTGCG
GCGGGATCGATAACATCCAAGTTTTGTGGTCGCTGCTGCTGTTGTTGCTG
TTGCTGTTGCTGCTGCTGGGACGTGGTTCGCTTATCCGCACCAGCTGCGC
TGTCGTCCCAACCCCAGCTCCGCCTTAAACCCTCCCCGCGCCGAGATGCA
TCATCATCAAGAGAAGTCGTGGCAGGGGAGACATGGCCGTGA
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