mRNA_H-paniculata_contig22186.5887.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22186.5887.1
Unique NamemRNA_H-paniculata_contig22186.5887.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22186.5887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22186contigH-paniculata_contig22186:1139..3851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size361
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22186.5887.1prot_H-paniculata_contig22186.5887.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22186 1164..3716 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.0026069-UTR-H-paniculata_contig22186:1138..11631622929613.0026069-UTR-H-paniculata_contig22186:1138..1163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22186 1139..1163 +
1691480935.5291147-UTR-H-paniculata_contig22186:1138..11631691480935.5291147-UTR-H-paniculata_contig22186:1138..1163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22186 1139..1163 +
1622929613.054685-UTR-H-paniculata_contig22186:3716..38511622929613.054685-UTR-H-paniculata_contig22186:3716..3851Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22186 3717..3851 +
1691480935.5580034-UTR-H-paniculata_contig22186:3716..38511691480935.5580034-UTR-H-paniculata_contig22186:3716..3851Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22186 3717..3851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.019046-CDS-H-paniculata_contig22186:1163..13631622929613.019046-CDS-H-paniculata_contig22186:1163..1363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22186 1164..1363 +
1691480935.5389223-CDS-H-paniculata_contig22186:1163..13631691480935.5389223-CDS-H-paniculata_contig22186:1163..1363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22186 1164..1363 +
1622929613.0364244-CDS-H-paniculata_contig22186:3715..37161622929613.0364244-CDS-H-paniculata_contig22186:3715..3716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22186 3716..3716 +
1691480935.5481496-CDS-H-paniculata_contig22186:3715..37161691480935.5481496-CDS-H-paniculata_contig22186:3715..3716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22186 3716..3716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22186.5887.1

>prot_H-paniculata_contig22186.5887.1 ID=prot_H-paniculata_contig22186.5887.1|Name=mRNA_H-paniculata_contig22186.5887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MAARRHTAAPSALVYVIVHFFLLVTNTRDCASAQQQQRPEQDDQRKDERI
VLQMGWRETMAELYAS*
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mRNA from alignment at H-paniculata_contig22186:1139..3851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22186.5887.1 ID=mRNA_H-paniculata_contig22186.5887.1|Name=mRNA_H-paniculata_contig22186.5887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2713bp|location=Sequence derived from alignment at H-paniculata_contig22186:1139..3851+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCCGATCCCTTCCTCCTACGGACATGGCCGCGCGTAGGCATACTGCTG
CACCCTCTGCATTAGTGTATGTGATAGTTCATTTTTTTTTGCTTGTAACA
AACACGAGGGATTGTGCTTCCGCACAACAACAGCAGCGGCCAGAACAAGA
TGATCAACGGAAAGATGAGCGGATCGTCTTGCAGATGGGCTGGAGGGAGA
CAATGGCTGAGCTATACGCGTCGTGGTGAGCTCTCCATCAAGAAGGGTAC
TCGTGCTGGCTGGGTGCACGCGAATTTAATGAAGCTGTACGTATCTTGGT
AGGTGCTTCTCTCGTGTGCTGGAAATTGTATTAAGCTGTGTTGTACCCTT
GTGGGTGCAGGTATTCGCTTGATGAAGTTCTTAATACGTAAGATATGCGA
CGGTACCGTACGTGTTGGGCGGGTCGTTGTCGTAATACAGCTTACTTTCA
CCATAGGATGCTTAGTGCTTACTGGTGTGCAACCTTCAACCTTTTACAGA
GATGGATGTGTACATATCTGATACCAGGTTCGCTATATATAACTCAGTCG
ATTCCGCATGTGCCTTCCAGCAGTAGCAGGAGCAGGAAAGGCAGTGGTTC
TGGATCCGTAACATCTGTCTTGTTGACGAATAGGCCAAAGTACCCTATTA
ATAGTGCATATGGTAGTTTTGTGTCATTCTATCCATCTTCCATGGTCTCA
CGTTCTCGTACATGATTGGAGCTAAGGAACACTGTTAGATAGCGCTGAAA
CTCCATGTGTCAACATGGATTGCATATTAATAATGGACGAAGTTGAAATT
GTTCCGAAAAATATTTCTTCAATATCATCCCCACCACAGCTGAAGCCCAA
TATCTTCATCGGACGTTTACTGAATGACGGTACTATTGTATGTCAAACAT
TATACAATAACGCCTCTAATATTACACAATATATATGCTTTAACCGTCAG
AGGCAAAACGGCCCTCTTCAATTGTTTGCAGGGTCTTTTTGTACAACTAA
TGGCAGAACGCTTCCTACGCGTATAGTACGCGTCGGCGAGTTTTCAATTC
TACCTATTAAAACGTGTATGGCATCGCTGACTCTCTTGATGGTCTACATT
TTCAAAGCATCATATATTGGTGTAATGTATTATATCGTGCGTACCAATCA
GCGTATCTCATTTCTAACTCGTCTATCAGTGACACCTTGTGTCCATGATA
AGATCTGTCAGCATTGGCCATACATGTATATCAGTACTCGTAACTCTAAC
GTGGTGCAGCGCGACTTCGTCGGCCATGTAGGAATGTTTCTCTCCTCGTT
GTTGCTGGGTGTAGGGTGACGTATGAGAGCGAACCAAACAACTTTGATAC
AGACATCATATCCGTGCCTTGAGCAAGAAACCACCCAGCCGTCCACCTGC
CAACTTCTCAAACACTTGAAAGCTGCCCAGCTACTGCGTAGCCCGGGGTG
CTTCTGTAAATCCTAACAAAGATTGTATATTCGAATATTTGGCATCATAC
TCTAAGCATTCCCTCCTCCTTCGGCAATGTCAATTCCCAATGATGCATAA
CCGAGATTCTGTTGACGTCATGCCCGAGACCCCCGACGATCTTCGCCGCA
CCCTTAAGGTGGTAAATCTTCGACAGTGGTTGCCAAAATTGCTCTGCGGT
TCGGACCAAGTAGTTACAGGCGGCTGCAGTGGACTCATTCATAAGGCTCT
TTCTGCTTCGACGCCGTTAGCTCAAGTTCACATTGATGCAGGTCATTCGC
ATGTGGAGATGACGTGAGTGACTATCACTGGATCGACCTTGGCTATTGTT
TAAGCACAAAAAATGGCGAGCACGCCTGAAGTGTGAGCTTTTCAACAATG
GCGAAGGCTCGGTATAGGGTGGGGAGCACAAAGAGGCATTATGGATACAA
TATGAGTAAAATAGTTCACCATGCGGGAGTCGAAGAGCGCCGAGATGGTG
CTAAACCCACTAGCGTTTTGCTGTTTCCATTCTACCACCTGGGTGTGACG
CTGTCATCGGCGGAGACATGATAACCTCGTCCGTTGTGTGTCAGCAACTA
TAAGGGAACGGAGAGGAATGTTAAACTGTTGGAAACCGGACACTATCATG
ACCACAACAACATAGTTCATAGCAACAGCTGTAAAACACGATCGTTCGTT
AATAGGCTACGCAGCATAGACGGTGCCAGGTACACCCGGTTCCTAAGGAG
TTAAGCACATAAACTAACCACGGAATTAAGCAGGGAATACTTCAGCTATC
CTCGGAGTTGAAGTGTGGTGCTTGTCTCCCTTCCAGGATAACTACTCTAG
CCTATATCCCAACCCCCACCTTTCAAGTCTTGTTGCGGTGGTGGTACCCT
GCAAACTTGAACTGAGGTGGGTGGGTGGGTAAGGAAATCGGGTGTTCTTA
GCTTTTTCAGACGCCTGAACAGCGCTGTAGTTCACCGAGAAATATTTACT
ATCTGAGATACTTGTGTTAAAGGTTCATGTTTCCGTTGAGGTATGCGCTC
CCTGCGGCTACCGAGCAGTCATAATTCGAGAACCCCCTCTCGCAAATTCT
GGGCGATGGCATCCGAACATCCCACAGAGTCACGATGGATGACGTGCCGT
GGGTGAAGCTGTTGGAAGGATGCACAAGCGATGAATACCGGCAGAACTTC
CTGGCGTTCGAATGCACAGTCATGGGCACGGTGATCGCGATCGAGCTCGC
TACAAATCAGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig22186:1139..3851+

>mRNA_H-paniculata_contig22186.5887.1 ID=mRNA_H-paniculata_contig22186.5887.1|Name=mRNA_H-paniculata_contig22186.5887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig22186:1139..3851+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGCGCGTAGGCATACTGCTGCACCCTCTGCATTAGTGTATGTGAT
AGTTCATTTTTTTTTGCTTGTAACAAACACGAGGGATTGTGCTTCCGCAC
AACAACAGCAGCGGCCAGAACAAGATGATCAACGGAAAGATGAGCGGATC
GTCTTGCAGATGGGCTGGAGGGAGACAATGGCTGAGCTATACGCGTCGTG
ATGGCCGCGCGTAGGCATACTGCTGCACCCTCTGCATTAGTGTATGTGAT
AGTTCATTTTTTTTTGCTTGTAACAAACACGAGGGATTGTGCTTCCGCAC
AACAACAGCAGCGGCCAGAACAAGATGATCAACGGAAAGATGAGCGGATC
GTCTTGCAGATGGGCTGGAGGGAGACAATGGCTGAGCTATACGCGTCGTG
AA
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