mRNA_H-paniculata_contig2217.5877.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2217.5877.1
Unique NamemRNA_H-paniculata_contig2217.5877.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2217.5877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2217contigH-paniculata_contig2217:13588..14277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size690
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.122566-CDS-H-paniculata_contig2217:13587..139861622929611.122566-CDS-H-paniculata_contig2217:13587..13986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2217 13588..13986 -
1691480935.1694107-CDS-H-paniculata_contig2217:13587..139861691480935.1694107-CDS-H-paniculata_contig2217:13587..13986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2217 13588..13986 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929611.140828-UTR-H-paniculata_contig2217:13986..142771622929611.140828-UTR-H-paniculata_contig2217:13986..14277Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2217 13987..14277 -
1691480935.1792545-UTR-H-paniculata_contig2217:13986..142771691480935.1792545-UTR-H-paniculata_contig2217:13986..14277Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2217 13987..14277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2217.5877.1prot_H-paniculata_contig2217.5877.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2217 13588..13986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2217.5877.1

>prot_H-paniculata_contig2217.5877.1 ID=prot_H-paniculata_contig2217.5877.1|Name=mRNA_H-paniculata_contig2217.5877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MTFSVTPLSPVLVVIDPCSHSHERALSSCHFSVSFWRCYMWPSLLPRQSC
GHATECRLHSFIAVVWYILNISCPLTADLDRGTVLWGGKQTEQTQATVDM
SKPPDTDKWTETAPPFSDVFSGHFRIHYPLVRH
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mRNA from alignment at H-paniculata_contig2217:13588..14277-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2217.5877.1 ID=mRNA_H-paniculata_contig2217.5877.1|Name=mRNA_H-paniculata_contig2217.5877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=690bp|location=Sequence derived from alignment at H-paniculata_contig2217:13588..14277- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGATATTCGGGCGTGACATCAAGCAGTATCCAAGAAGCGCCAACTCG
ATTATCTGTTGTATTATTCTATCGCTCTGGGGTTTGTTCGGTAGTGAACG
CACGCGCAAGTCACCTCCTTACGGGTGCGATAACGAGACCACACCGTCTT
TTTTTCCCAGTTTCACTTTGTTGGTGCCATTTTGTTTCGTCTTGAGTTAG
CTGTCCCCCGGAACAGAATGGTCAAGATACGGAGCTAAGGGGACATTGCA
TACGACATCAGCAATAAACCCCTGAATTATGCCCTAATCGAATGACTTTC
AGTGTTACTCCTCTCTCGCCCGTTTTGGTGGTGATTGATCCATGTTCGCA
CTCGCACGAAAGAGCACTGTCATCGTGTCATTTTAGCGTGTCTTTCTGGC
GCTGTTATATGTGGCCCTCCTTGCTTCCTCGACAGAGTTGTGGACATGCC
ACAGAGTGCCGCCTACATTCTTTTATCGCTGTTGTGTGGTACATACTAAA
CATTTCCTGTCCTCTAACTGCGGATCTGGATCGAGGAACTGTTTTGTGGG
GGGGGAAGCAGACAGAGCAGACGCAGGCAACTGTAGACATGAGCAAACCA
CCAGACACGGACAAATGGACGGAAACCGCACCACCCTTTTCTGATGTTTT
CTCTGGGCATTTTCGGATTCACTACCCCCTCGTAAGACAT
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Coding sequence (CDS) from alignment at H-paniculata_contig2217:13588..14277-

>mRNA_H-paniculata_contig2217.5877.1 ID=mRNA_H-paniculata_contig2217.5877.1|Name=mRNA_H-paniculata_contig2217.5877.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig2217:13588..14277- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTTCAGTGTTACTCCTCTCTCGCCCGTTTTGGTGGTGATTGATCC
ATGTTCGCACTCGCACGAAAGAGCACTGTCATCGTGTCATTTTAGCGTGT
CTTTCTGGCGCTGTTATATGTGGCCCTCCTTGCTTCCTCGACAGAGTTGT
GGACATGCCACAGAGTGCCGCCTACATTCTTTTATCGCTGTTGTGTGGTA
CATACTAAACATTTCCTGTCCTCTAACTGCGGATCTGGATCGAGGAACTG
TTTTGTGGGGGGGGAAGCAGACAGAGCAGACGCAGGCAACTGTAGACATG
AGCAAACCACCAGACACGGACAAATGGACGGAAACCGCACCACCCTTTTC
TGATGTTTTCTCTGGGCATTTTCGGATTCACTACCCCCTCGTAAGACATA
TGACTTTCAGTGTTACTCCTCTCTCGCCCGTTTTGGTGGTGATTGATCCA
TGTTCGCACTCGCACGAAAGAGCACTGTCATCGTGTCATTTTAGCGTGTC
TTTCTGGCGCTGTTATATGTGGCCCTCCTTGCTTCCTCGACAGAGTTGTG
GACATGCCACAGAGTGCCGCCTACATTCTTTTATCGCTGTTGTGTGGTAC
ATACTAAACATTTCCTGTCCTCTAACTGCGGATCTGGATCGAGGAACTGT
TTTGTGGGGGGGGAAGCAGACAGAGCAGACGCAGGCAACTGTAGACATGA
GCAAACCACCAGACACGGACAAATGGACGGAAACCGCACCACCCTTTTCT
GATGTTTTCTCTGGGCATTTTCGGATTCACTACCCCCTCGTAAGACAT
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